DK960383
Clone id TST39A01NGRL0007_E08
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_E08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
ATGGGCGGACCTCTGCAGGATGTGGTGGTGGCGGTTCTAGCGAGGTGGGCGAGCTGCTGG
CTGCAGACCATGGGGTACTTCAAAGTTTGCCGTCGCTCCACACCTGTTGGCGCTGACCTC
CACACACTTCGACGCGCCTGCTTCCATGTGTCCCGCCGTACCCTGTCTTCCTCTCAACAC
ATCTGACTGCTCGGACTTGAATGTATATCTTGCCCCTGTTTCGCAACATGGATAATGTGT
GTTGTGTTGGCCTTGTGGATTGCCCGCAAATCAGAATCTCTTGTACCTACCTTAAATTTT
CAAACTTGCTGTGGTCTTGTACATAGCTGAGAATATGTGACACTCTCATTGCCCTGTACT
CCAAGCCTTCGTATGTATTTGCTAGATTATGCGTGTGATTAACTTACATGTTAAACTTAT
GGTCATGTTACATTA
■■Homology search results ■■ -
sp_hit_id O13837
Definition sp|O13837|GATA_SCHPO 4-aminobutyrate aminotransferase OS=Schizosaccharomyces pombe
Align length 65
Score (bit) 33.9
E-value 0.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960383|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E08, 5'
(435 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O13837|GATA_SCHPO 4-aminobutyrate aminotransferase OS=Schizos... 34 0.30
sp|P33183|NIGB_SAMNI Nigrin b OS=Sambucus nigra PE=1 SV=2 31 1.9
sp|O10353|Y114_NPVOP Uncharacterized 48.2 kDa protein OS=Orgyia ... 31 2.5
sp|Q09499|IRE1_CAEEL Serine/threonine-protein kinase/endoribonuc... 30 3.3
sp|Q64632|ITB4_RAT Integrin beta-4 OS=Rattus norvegicus GN=Itgb4... 30 5.6
sp|P38704|STP2_YEAST Zinc finger protein STP2 OS=Saccharomyces c... 29 7.3
sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A OS=Xe... 29 7.3
sp|Q32KT5|CF136_BOVIN Uncharacterized protein C6orf136 homolog O... 29 7.3
sp|Q15QR7|PYRG_PSEA6 CTP synthase OS=Pseudoalteromonas atlantica... 29 9.6
sp|Q9VCA5|SYFB_DROME Probable phenylalanyl-tRNA synthetase beta ... 29 9.8
sp|Q9SGE9|SYFB_ARATH Probable phenylalanyl-tRNA synthetase beta ... 29 9.8
sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidi... 29 9.8
sp|A1JP09|MTNA_YERE8 Methylthioribose-1-phosphate isomerase OS=Y... 29 9.8

>sp|O13837|GATA_SCHPO 4-aminobutyrate aminotransferase
OS=Schizosaccharomyces pombe GN=SPAC19D5.07 PE=2 SV=1
Length = 474

Score = 33.9 bits (76), Expect = 0.30
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -3

Query: 397 HTHNLANTYEGLEYRAMRVSHILSYVQDHSKFENLR*VQEILICGQSTRPTQH--TLSML 224
H + NT+ G +RA++ +IL +QD N++ V + L G +H ++ L
Sbjct: 350 HAYQHFNTWMGDPFRAVQSRYILQEIQDKDLLNNVKSVGDFLYAGLEELARKHPGKINNL 409

Query: 223 RNRGK 209
R +GK
Sbjct: 410 RGKGK 414


>sp|P33183|NIGB_SAMNI Nigrin b OS=Sambucus nigra PE=1 SV=2
Length = 563

Score = 31.2 bits (69), Expect = 1.9
Identities = 25/102 (24%), Positives = 42/102 (41%)
Frame = -3

Query: 400 NHTHNLANTYEGLEYRAMRVSHILSYVQDHSKFENLR*VQEILICGQSTRPTQHTLSMLR 221
+HTH L + +E L Y+ ++ +L S +R + + G+ + LR
Sbjct: 249 DHTHRLVDNFEEL-YKITGIAILLFRCSSPSNDNAIR--MPLDLAGEDNKYNDGETCTLR 305

Query: 220 NRGKIYIQVRAVRCVERKTGYGGTHGSRRVEVCGGQRQQVWS 95
I R CV+ + GY ++ CG QR Q W+
Sbjct: 306 TSFTRNIVGRDGLCVDVRNGYDTDGTPLQLWPCGTQRNQRWT 347


>sp|O10353|Y114_NPVOP Uncharacterized 48.2 kDa protein OS=Orgyia
pseudotsugata multicapsid polyhedrosis virus GN=ORF114
PE=4 SV=1
Length = 424

Score = 30.8 bits (68), Expect = 2.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2

Query: 236 CVLCWPCGLPANQNLLYLP 292
CVLC+ GLP NL YLP
Sbjct: 139 CVLCYTAGLPFRDNLWYLP 157


>sp|Q09499|IRE1_CAEEL Serine/threonine-protein kinase/endoribonuclease
ire-1 OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2
Length = 967

Score = 30.4 bits (67), Expect = 3.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2

Query: 173 EEDRVRRDTWKQARRSVWRSAPTGVERRQTLK 78
EE+RVR+ ++ VW AP VE+R LK
Sbjct: 921 EEERVRKKIKEEMANEVWARAPKPVEQRTPLK 952


>sp|Q64632|ITB4_RAT Integrin beta-4 OS=Rattus norvegicus GN=Itgb4
PE=2 SV=1
Length = 1807

Score = 29.6 bits (65), Expect = 5.6
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2

Query: 293 KVGTRDSDLRAIHKANTTHIIHVAKQGQ--DIHSSPS 189
+VGT + LRA+ + TH+ +AK+ Q +IH PS
Sbjct: 404 EVGTYNVHLRAVEDIDGTHVCQLAKEDQRGNIHLKPS 440


>sp|P38704|STP2_YEAST Zinc finger protein STP2 OS=Saccharomyces
cerevisiae GN=STP2 PE=1 SV=1
Length = 541

Score = 29.3 bits (64), Expect = 7.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -2

Query: 158 RRDTWKQARRSVWRSAPTGVERRQTLKYPMVCSQQLAHLARTAT-------TTSCRGPP 3
RRDT+K +S + P GV+ + K P VC+Q H + + + SC+G P
Sbjct: 255 RRDTYKTHLKSRHFTYPEGVKPQDRNKSPGVCTQCGEHFSTSESWVENHIEAGSCKGLP 313


>sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A
OS=Xenopus laevis GN=rest-A PE=2 SV=1
Length = 1501

Score = 29.3 bits (64), Expect = 7.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3

Query: 370 EGLEYRAMRVSHILSYVQDHSKFENLR*VQEILICGQSTRPTQHTLSMLRN 218
+G Y R H L++++ H+K V + IC ST H LRN
Sbjct: 217 DGCGYNTNRFDHYLAHLKHHNKAGENERVYKCTICTYSTVSEYHWKKHLRN 267


>sp|Q32KT5|CF136_BOVIN Uncharacterized protein C6orf136 homolog
OS=Bos taurus PE=2 SV=1
Length = 315

Score = 29.3 bits (64), Expect = 7.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3

Query: 69 HGVLQSLPSLHTCWR*PPHTS-TRLLPCVPPYPV 167
H + PSL W PP + TRLLP PP P+
Sbjct: 40 HSTTTTSPSLPLFWSPPPPSPPTRLLPPAPPLPL 73


>sp|Q15QR7|PYRG_PSEA6 CTP synthase OS=Pseudoalteromonas atlantica
(strain T6c / BAA-1087) GN=pyrG PE=3 SV=1
Length = 543

Score = 28.9 bits (63), Expect = 9.6
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -3

Query: 319 QDHSKFENLR*VQEILICGQ-STRPTQHTLSMLRNRG 212
+DH+ + +L V I + G+ T+PTQH++ LR+ G
Sbjct: 165 RDHAMYMHLTLVPYIAVSGEVKTKPTQHSVKELRSIG 201


>sp|Q9VCA5|SYFB_DROME Probable phenylalanyl-tRNA synthetase beta
chain OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1
Length = 589

Score = 28.9 bits (63), Expect = 9.8
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = -1

Query: 192 EQSDVLRGRQGTAGHMEAGASKCVEVSANRCGATANFEVPHGL 64
E SDV+ + T E GA V A C TA FEV HGL
Sbjct: 474 EISDVVVADEST----EVGARNERRVCAVNCNKTAGFEVVHGL 512


tr_hit_id B8J0Z4
Definition tr|B8J0Z4|B8J0Z4_DESDE Glycerol-3-phosphate dehydrogenase, anaerobic, C subunit OS=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Align length 61
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960383|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E08, 5'
(435 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8J0Z4|B8J0Z4_DESDE Glycerol-3-phosphate dehydrogenase, anaer... 34 4.1
tr|B0P034|B0P034_9CLOT Putative uncharacterized protein OS=Clost... 33 5.4

>tr|B8J0Z4|B8J0Z4_DESDE Glycerol-3-phosphate dehydrogenase,
anaerobic, C subunit OS=Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774 GN=Ddes_1519 PE=4
SV=1
Length = 409

Score = 33.9 bits (76), Expect = 4.1
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1

Query: 243 NTHYPCCETGARYTFKSEQSDVLR--GRQGTAGHMEAGASKCVEVSANRCGATANFEVPH 70
+ H CC Y FK+E+ D+ + G + A E+GA ++SA+ CG T ++ H
Sbjct: 329 DAHAGCCGISGSYGFKTEKYDIAQEVGAELFAAVRESGA----DISASECG-TCRVQIRH 383

Query: 69 G 67
G
Sbjct: 384 G 384


>tr|B0P034|B0P034_9CLOT Putative uncharacterized protein
OS=Clostridium sp. SS2/1 GN=CLOSS21_01343 PE=4 SV=1
Length = 741

Score = 33.5 bits (75), Expect = 5.4
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = -3

Query: 262 QSTRPTQHTLSMLRNRGKIYIQVRAVRCVERKTGYG 155
++TR T +T+ LR++ K Y++VRA + V+ K YG
Sbjct: 695 RNTRKTIYTIKSLRSKKKCYVKVRAYKVVKGKKIYG 730