DK960387
Clone id TST39A01NGRL0007_E13
Library
Length 612
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_E13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTTTCTGGCCGTCTCATCTCCGCTCAACCAATGCAGAAACCCTAGCGAGGAGCTCCATGG
CCGCTGCAGGCAAGAGTTTTTAAGTAAACCCTTTTTGCAGGGAAGCTTAGTAAAGAAGAC
AGGTCGTCAGTCTCATCTTCAGCAGCATCAAGATGTGGCGATCGTCGCGTCCTCTTCTTT
TCCTAGTTTTCGAAGAGGGCAATCTTCTTCTGCTTCATCACTGTCCGCATCTATACTAAC
GCCATCTTCGTCGACCAAGACATCTACTGGGGGCCGCGAAGTCTACCAGCCCTTTAGGCC
TCCTCCCCCTGTCATGCCCGCCTTAGAGAACATTTCCATTGATGAGCAGCTTCAAATACT
GAGGGAAAGACGCGGTCTATGGTTTGATTATGCAATTCATGTTCCCTCACTTATTCGGGC
AGGCTTTGCACCCTCCATGATTGACGAAGCTACTGGGGTCACCGGTGTCGAACAGAACAA
GATTGTTGTTGCATCACAGGTGCGTTCCTCTCTCCAGGCTTCAGGTATGGGACAAGAAGA
TCTGTCTTTCTACGACATTGGTGGTGCCGATCTGCTTTATGAGCTTAGAATCCTGTCTGC
TGAGCAAAGAAA
■■Homology search results ■■ -
sp_hit_id A1WZB3
Definition sp|A1WZB3|HLDE_HALHL Bifunctional protein hldE OS=Halorhodospira halophila (strain DSM 244 / SL1)
Align length 102
Score (bit) 32.3
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960387|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E13, 5'
(612 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A1WZB3|HLDE_HALHL Bifunctional protein hldE OS=Halorhodospira... 32 2.0
sp|Q59969|CARB_SULSO Carbamoyl-phosphate synthase large chain OS... 32 2.6
sp|P43666|YHJW_SALTY UPF0141 inner membrane protein yhjW OS=Salm... 30 9.8

>sp|A1WZB3|HLDE_HALHL Bifunctional protein hldE OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=hldE PE=3 SV=1
Length = 477

Score = 32.3 bits (72), Expect = 2.0
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Frame = +2

Query: 320 ALENISIDEQLQILR-----ERRGLWFDYAIHVPSLIRAGFAPSMIDEATGVTGVEQNKI 484
A + IS + + ++R ER G + A++V +L G A + G TG ++
Sbjct: 28 ATQRISPEAPVPVVRVDGAEERPGGAANVALNVAAL--GGEA-----QVVGPTGSDE--- 77

Query: 485 VVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
A ++ L+A+G+GQ F+ I GAD + +LR++S Q+
Sbjct: 78 -AADRLAELLEAAGVGQR---FHRIAGADTITKLRVISRHQQ 115


>sp|Q59969|CARB_SULSO Carbamoyl-phosphate synthase large chain
OS=Sulfolobus solfataricus GN=carB PE=3 SV=1
Length = 1051

Score = 32.0 bits (71), Expect = 2.6
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2

Query: 329 NISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEATGVTGVEQNKI 484
N+S +E L+ L+ERR WF YA + G + + E TG+ NKI
Sbjct: 414 NMSKEEALKYLKERRPYWFLYA---AKAFKEGATINEVYEVTGINEFFLNKI 462


>sp|P43666|YHJW_SALTY UPF0141 inner membrane protein yhjW
OS=Salmonella typhimurium GN=yhjW PE=3 SV=2
Length = 563

Score = 30.0 bits (66), Expect = 9.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1

Query: 105 LPCKKGLLKNSCLQRPWSSSLGFLHWLSGDETARN 1
LP G++ NS L W S+LG W DE++ N
Sbjct: 193 LPSYGGVVANSYLPSNWLSALGLYAWAQVDESSDN 227


tr_hit_id A9RMF6
Definition tr|A9RMF6|A9RMF6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 112
Score (bit) 139.0
E-value 1.0e-31
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960387|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E13, 5'
(612 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RMF6|A9RMF6_PHYPA Predicted protein (Fragment) OS=Physcomit... 139 1e-31
tr|A7QMS5|A7QMS5_VITVI Chromosome undetermined scaffold_127, who... 120 5e-26
tr|B4FR29|B4FR29_MAIZE Putative uncharacterized protein OS=Zea m... 119 1e-25
tr|A5B707|A5B707_VITVI Putative uncharacterized protein OS=Vitis... 118 2e-25
tr|Q9LKR8|Q9LKR8_ARATH T26D3.4 protein (At5g28500) (Putative unc... 112 2e-23
tr|Q7XDY9|Q7XDY9_ORYSJ Os10g0445600 protein OS=Oryza sativa subs... 111 4e-23
tr|Q9SR19|Q9SR19_ARATH F7O18.2 protein (Putative uncharacterized... 100 9e-20
tr|B2IUN0|B2IUN0_NOSP7 Putative uncharacterized protein OS=Nosto... 83 1e-14
tr|A2Z7X6|A2Z7X6_ORYSI Putative uncharacterized protein OS=Oryza... 82 3e-14
tr|Q8YLP6|Q8YLP6_ANASP All5250 protein OS=Anabaena sp. (strain P... 79 2e-13
tr|Q3MD89|Q3MD89_ANAVT Putative uncharacterized protein OS=Anaba... 79 2e-13
tr|A0ZI62|A0ZI62_NODSP Putative uncharacterized protein OS=Nodul... 75 4e-12
tr|B4WLN0|B4WLN0_9SYNE Putative uncharacterized protein OS=Synec... 74 7e-12
tr|A0YWA4|A0YWA4_9CYAN Putative uncharacterized protein OS=Lyngb... 74 9e-12
tr|B7JYJ8|B7JYJ8_SYNP8 Putative uncharacterized protein OS=Synec... 69 2e-10
tr|B4BV62|B4BV62_9CHRO Putative uncharacterized protein OS=Cyano... 69 2e-10
tr|B4VSU9|B4VSU9_9CYAN Putative uncharacterized protein OS=Micro... 67 8e-10
tr|Q55875|Q55875_SYNY3 Sll0102 protein OS=Synechocystis sp. (str... 66 2e-09
tr|B4AZT7|B4AZT7_9CHRO Putative uncharacterized protein OS=Cyano... 65 2e-09
tr|Q8DI26|Q8DI26_THEEB Tlr1766 protein OS=Thermosynechococcus el... 65 4e-09
tr|Q4C5M7|Q4C5M7_CROWT Putative uncharacterized protein OS=Croco... 64 5e-09
tr|Q2JNY9|Q2JNY9_SYNJB Putative uncharacterized protein OS=Synec... 64 7e-09
tr|B0JQM2|B0JQM2_MICAN Putative uncharacterized protein OS=Micro... 64 9e-09
tr|B0CCB6|B0CCB6_ACAM1 Putative uncharacterized protein OS=Acary... 64 9e-09
tr|A3IPQ2|A3IPQ2_9CHRO Putative uncharacterized protein OS=Cyano... 64 9e-09
tr|B1X0I3|B1X0I3_CYAA5 Putative uncharacterized protein OS=Cyano... 63 1e-08
tr|A8YDJ8|A8YDJ8_MICAE Similar to tr|Q4C5M7|Q4C5M7_CROWT Hypothe... 63 1e-08
tr|Q2JVV9|Q2JVV9_SYNJA Putative uncharacterized protein OS=Synec... 62 2e-08
tr|B7K7W5|B7K7W5_9CHRO Putative uncharacterized protein OS=Cyano... 62 2e-08
tr|A9TW19|A9TW19_PHYPA Predicted protein OS=Physcomitrella paten... 61 6e-08

>tr|A9RMF6|A9RMF6_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_23507 PE=4 SV=1
Length = 368

Score = 139 bits (351), Expect = 1e-31
Identities = 67/112 (59%), Positives = 89/112 (79%)
Frame = +2

Query: 275 REVYQPFRPPPPVMPALENISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEAT 454
R++YQPFRPP + ++ EQL+ILRERRGLW++YA +P L+R+G+ PSMI+E T
Sbjct: 1 RDLYQPFRPPINIETPSGATTVTEQLEILRERRGLWYEYASLIPILVRSGYTPSMIEEET 60

Query: 455 GVTGVEQNKIVVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
G+TGVEQN IVV SQVR+SL+A+G +E L +D+GG +LLYELRILSA+QR
Sbjct: 61 GMTGVEQNIIVVGSQVRNSLKANGFDEEMLRTFDLGGGELLYELRILSAQQR 112


>tr|A7QMS5|A7QMS5_VITVI Chromosome undetermined scaffold_127, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00002190001 PE=4 SV=1
Length = 437

Score = 120 bits (302), Expect = 5e-26
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 3/114 (2%)
Frame = +2

Query: 278 EVYQPFRPPPPVMPA---LENISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDE 448
E+YQPFRPP P P ++ +L++L R GLWF+YA V +L++ GF PS ++E
Sbjct: 52 ELYQPFRPPSPNAPIPSHFRSLDTGSRLEVLSNRLGLWFEYAPLVSTLMQEGFTPSSLEE 111

Query: 449 ATGVTGVEQNKIVVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
ATG++GVEQN++VVA+QVR SL SG+ + LSF+D GG LLYE+R+LSA +R
Sbjct: 112 ATGISGVEQNRLVVAAQVRHSLLQSGLDPQILSFFDNGGDSLLYEIRLLSARER 165


>tr|B4FR29|B4FR29_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 463

Score = 119 bits (298), Expect = 1e-25
Identities = 63/116 (54%), Positives = 85/116 (73%), Gaps = 5/116 (4%)
Frame = +2

Query: 278 EVYQPFRPPP-PVMPALENISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEAT 454
++YQPF PPP P+ P+L N+ + E+LQILR+R GLW +YA + SL R GF PS I EAT
Sbjct: 71 QLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISSLSRDGFNPSSIQEAT 130

Query: 455 GVTGVEQNKIVVASQVRSSL---QASGMGQEDLSFYD-IGGADLLYELRILSAEQR 610
G++GVEQN +VVASQVR SL +A+ + L ++D +GG ++LYELR L+A QR
Sbjct: 131 GISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLGGPEVLYELRFLNARQR 186


>tr|A5B707|A5B707_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041751 PE=4 SV=1
Length = 431

Score = 118 bits (296), Expect = 2e-25
Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 3/114 (2%)
Frame = +2

Query: 278 EVYQPFRPPPPVMPA---LENISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDE 448
E+YQPFRPP P P ++ +L++L R GLWF+YA V +L++ GF PS ++E
Sbjct: 52 ELYQPFRPPSPNAPIPSHFRSLDTGSRLEVLSNRLGLWFEYAPLVSTLMQEGFTPSSLEE 111

Query: 449 ATGVTGVEQNKIVVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
ATG++GVEQN++VVA+QVR SL S + + LSF+D GG LLYE+R+LSA +R
Sbjct: 112 ATGISGVEQNRLVVAAQVRHSLLQSSLDPQILSFFDNGGDSLLYEIRLLSARER 165


>tr|Q9LKR8|Q9LKR8_ARATH T26D3.4 protein (At5g28500) (Putative
uncharacterized protein At5g28500) OS=Arabidopsis
thaliana GN=At5g28500 PE=2 SV=1
Length = 434

Score = 112 bits (280), Expect = 2e-23
Identities = 52/113 (46%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Frame = +2

Query: 275 REVYQPFRPPP-PVMPALENISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEA 451
+++YQPFRPPP P+ P ++ ++++L +R GLWF+YA + SL GF P I+E
Sbjct: 52 QQLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEEL 111

Query: 452 TGVTGVEQNKIVVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
TG++GVEQN ++V +QVR SL SG E ++ +D GA+LLYE+R+L+ QR
Sbjct: 112 TGISGVEQNSLIVGAQVRDSLVQSGAKPELIAAFDTNGAELLYEIRLLNTTQR 164


>tr|Q7XDY9|Q7XDY9_ORYSJ Os10g0445600 protein OS=Oryza sativa subsp.
japonica GN=Os10g0445600 PE=2 SV=1
Length = 469

Score = 111 bits (277), Expect = 4e-23
Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 4/115 (3%)
Frame = +2

Query: 278 EVYQPFRPPPPVMP-ALENISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEAT 454
++YQPF PPP +P +++ + ++L +LR+R GLW +YA + +L R GF PS I+EAT
Sbjct: 78 QLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLISALSREGFTPSSIEEAT 137

Query: 455 GVTGVEQNKIVVASQVRSSLQA--SGMGQEDLSFYD-IGGADLLYELRILSAEQR 610
G++GVEQN +VVA+QVR SL A G E L ++D GG +LLYELR L+A QR
Sbjct: 138 GISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGGPELLYELRFLNARQR 192


>tr|Q9SR19|Q9SR19_ARATH F7O18.2 protein (Putative uncharacterized
protein At3g04550) (Putative uncharacterized protein
At3g04550; F7O18.2) OS=Arabidopsis thaliana
GN=At3g04550/F7O18.2 PE=2 SV=1
Length = 449

Score = 100 bits (248), Expect = 9e-20
Identities = 49/113 (43%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Frame = +2

Query: 275 REVYQPFRPPP-PVMPALENISIDEQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEA 451
+++YQPFRPP P+ ++ +++IL R LWF+YA + SL GF P I+E
Sbjct: 62 QQLYQPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEEL 121

Query: 452 TGVTGVEQNKIVVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
TG++ +EQN+++V +QVR S+ S E +S +D GGA+LLYE+R+LS QR
Sbjct: 122 TGISSIEQNRLIVGAQVRDSILQSIHEPELISAFDTGGAELLYEIRLLSTTQR 174


>tr|B2IUN0|B2IUN0_NOSP7 Putative uncharacterized protein OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102)
GN=Npun_F4437 PE=4 SV=1
Length = 362

Score = 83.2 bits (204), Expect = 1e-14
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Frame = +2

Query: 302 PPPVMPALENISID---EQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEATGVTGVE 472
PP EN + D E L+ LR+++G W ++ + SL++ G+ P I EATG ++
Sbjct: 5 PPNAQNPEENATNDVAQELLRRLRQKQGNWVEWGTAIASLLKTGYNPQEIFEATGFEPIQ 64

Query: 473 QNKIVVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
QN++VV SQV +SL+ SG+ E S Y G+D+LYELR+L+ E+R
Sbjct: 65 QNQVVVGSQVYNSLENSGVSAETRSHYATRGSDVLYELRLLTQEER 110


>tr|A2Z7X6|A2Z7X6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_33814 PE=4 SV=1
Length = 361

Score = 81.6 bits (200), Expect = 3e-14
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Frame = +2

Query: 380 WFDYAIHVPSLIRAGFAPSMIDEATGVTGVEQNKIVVASQVRSSLQA--SGMGQEDLSFY 553
W +YA + +L R GF PS I+EATG++GVEQN++VVA+QVR SL A G E L ++
Sbjct: 5 WHEYAPLISALSREGFTPSSIEEATGISGVEQNRVVVATQVRDSLVADEGGFPAELLRYF 64

Query: 554 D-IGGADLLYELRILSAEQR 610
D GG +LLYELR L+A QR
Sbjct: 65 DSYGGPELLYELRFLNARQR 84


>tr|Q8YLP6|Q8YLP6_ANASP All5250 protein OS=Anabaena sp. (strain PCC
7120) GN=all5250 PE=4 SV=1
Length = 361

Score = 79.3 bits (194), Expect = 2e-13
Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Frame = +2

Query: 305 PPVMPALENISID---EQLQILRERRGLWFDYAIHVPSLIRAGFAPSMIDEATGVTGVEQ 475
PP P EN + + E L+ LR+++G W ++ + SL ++G+ P I EATG V+Q
Sbjct: 5 PPNAPNPENATNELAQELLRKLRQKQGNWVEWGQAIASLQKSGYNPQDIFEATGFEPVQQ 64

Query: 476 NKIVVASQVRSSLQASGMGQEDLSFYDIGGADLLYELRILSAEQR 610
N+++V SQV +SL+ SG L+ Y G+D+LYELR+L+ E+R
Sbjct: 65 NQVIVGSQVYNSLEKSGASAATLAHYATRGSDVLYELRLLTHEER 109