NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960389
Clone id TST39A01NGRL0007_E15
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_E15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGTGCCTGTGCATGCCGGAAGGGACAGGTGTACTATTGAGAAACTCAGCCGGGAAAGTT
GAGAAGACATTGCATGTTTACATATGCGATGATAAGTTGCATGTTTTCCGCTTTATGACA
AGTGGCTGATGCAGCGACATACTTTCCGATGACTTATTTACAGACATGTAGAGCCAAGGG
GGTTTGTGGTTTTGACAAGAAAAGGGCTACAAGGTTACGACTGGGCACGATTTCCCAGGC
AGATCTGGCCAGTGACCTTTTTACAAGTGGCCTATGTAATGGTCTTGCTATCATGAATGA
GTCAGGAAGAATGAGTATGCAGCATTGGGCCGGCTTCGACTGCTCTCACTTAAAAGATTG
TCTGAAGGATCACCCTGCAATGAAATTAATGGACATGGTGGCAGAGCGAGATGCTGCCGT
TGCGGTGCGTGATACAGCAATGGCAGAAAAGAAGACTGCTCTTGTTGAGAGGGATGCCGC
TTTCCTGCAAAGAGAGGTGGCATATGCTGATAGAACTGTAGCATTGAATGAGCGTGATGC
AGCATACGCAGTTC
■■Homology search results ■■ -
sp_hit_id Q55G20
Definition sp|Q55G20|Y0216_DICDI Putative uncharacterized protein DDB_G0268364 OS=Dictyostelium discoideum
Align length 64
Score (bit) 32.0
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960389|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E15, 5'
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q55G20|Y0216_DICDI Putative uncharacterized protein DDB_G0268...    32   2.1  
sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thal...    31   3.5  
sp|Q21VY7|LFTR_RHOFD Leucyl/phenylalanyl-tRNA--protein transfera...    31   4.6  
sp|Q2HHB4|SDS23_CHAGB Protein SDS23 OS=Chaetomium globosum GN=SD...    30   6.0  
sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattu...    30   6.0  

>sp|Q55G20|Y0216_DICDI Putative uncharacterized protein DDB_G0268364
           OS=Dictyostelium discoideum GN=DDB_G0268364 PE=4 SV=1
          Length = 712

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -1

Query: 518 QFYQHMPPLFAGKRHPSQQEQSSFLPLLYHAPQRQHLALPPCPLISLQGDPSDNLLSESS 339
           Q YQ          H  QQ+QSS  P++    Q+Q L  PP PL+ ++  PS   L +  
Sbjct: 190 QQYQQQQHQQQHHHHHHQQQQSS--PIITRQQQKQLLLSPPPPLLQIE-TPSSPPLQQQQ 246

Query: 338 RSRP 327
           + +P
Sbjct: 247 QPQP 250


>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis
           thaliana GN=HDA15 PE=2 SV=1
          Length = 552

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 203 RATRLRLGTISQADLASDLFTSGLCNGLAIMNESG-RMSMQHWAGFDCSH 349
           RA RL  G  +  DLA+D+FT  + NG A++   G    ++H  GF C H
Sbjct: 243 RAARLAAGLCT--DLATDIFTGRVKNGFALVRPPGHHAGVRHAMGF-CLH 289


>sp|Q21VY7|LFTR_RHOFD Leucyl/phenylalanyl-tRNA--protein transferase
           OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
           BAA-621 / T118) GN=aat PE=3 SV=1
          Length = 254

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +2

Query: 101 MFSAL*QVADAATYFPMTYLQTCRAKGVCGFDKKRATRLRLGTISQADLASDLFTSGLCN 280
           MFS   +V+DA+       +  CR  GV   D ++ T   L ++   +++ DLF  GL  
Sbjct: 172 MFS---RVSDASKIALAALIGFCRHHGVKQIDCQQNTP-HLASLGAGEISRDLFLKGLAA 227

Query: 281 GLAIMNESGRMSMQHW 328
           GLA    +     + W
Sbjct: 228 GLAEAGPAWEFDRRFW 243


>sp|Q2HHB4|SDS23_CHAGB Protein SDS23 OS=Chaetomium globosum GN=SDS23
           PE=3 SV=1
          Length = 534

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 536 HAHSMLQFYQHMPPLFAGKRHPSQQEQSSFLPLLYHAPQRQH 411
           H  S  +  +H PP     RHPS  +Q + L L+ H P  +H
Sbjct: 48  HRQSFAENQRHPPPSPRNHRHPSLTQQ-ALLELMNHPPTNRH 88


>sp|Q8R2H1|IKBL1_RAT NF-kappa-B inhibitor-like protein 1 OS=Rattus
           norvegicus GN=Nfkbil1 PE=2 SV=2
          Length = 381

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -1

Query: 482 KRHPSQQEQSSFLPLLYHAPQRQHLALPPCPLISLQGDPS------DNLLSESSRSRPNA 321
           +RHP     +   P L+ A  R H A   C L+ L  DP+      D  L  ++R  PNA
Sbjct: 54  QRHPGLDVDAGQPPPLHRACAR-HDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPNA 112

Query: 320 AYSFFL 303
              FFL
Sbjct: 113 YTDFFL 118
tr_hit_id B8LNW9
Definition tr|B8LNW9|B8LNW9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 86
Score (bit) 58.5
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960389|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_E15, 5'
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LNW9|B8LNW9_PICSI Putative uncharacterized protein OS=Picea...    59   2e-07
tr|B8LRA8|B8LRA8_PICSI Putative uncharacterized protein OS=Picea...    46   0.002
tr|B4FYC0|B4FYC0_MAIZE GAGA-binding transcriptional activator OS...    44   0.006
tr|Q5VSA8|Q5VSA8_ORYSJ Os06g0130600 protein OS=Oryza sativa subs...    44   0.008
tr|A3B819|A3B819_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.008
tr|A2Y8V8|A2Y8V8_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.008
tr|A1E2T9|A1E2T9_MEDTR GAGA-binding transcriptional activator OS...    42   0.022
tr|Q0PWL2|Q0PWL2_CARPT GAGA-binding transcriptional activator OS...    40   0.064
tr|Q9FIG5|Q9FIG5_ARATH Gb|AAF18661.1 OS=Arabidopsis thaliana PE=...    40   0.083
tr|Q8L999|Q8L999_ARATH Putative uncharacterized protein (GAGA-bi...    40   0.083
tr|Q2PQR5|Q2PQR5_OLIPU GAGA-binding transcriptional activator OS...    40   0.083
tr|B2Z458|B2Z458_VITVI GAGA-binding transcriptional activator BB...    40   0.083
tr|A8MQZ4|A8MQZ4_ARATH Uncharacterized protein At5g42520.2 OS=Ar...    40   0.083
tr|A5A510|A5A510_BRARP GAGA-binding transcriptional activator OS...    39   0.14 
tr|B2Z456|B2Z456_VITVI GAGA-binding transcriptional activator BB...    36   1.2  
tr|A9JRK9|A9JRK9_XENTR LOC100135093 protein OS=Xenopus tropicali...    35   2.7  
tr|A9PBI4|A9PBI4_POPTR Putative uncharacterized protein OS=Popul...    35   2.7  
tr|A8D193|A8D193_POPTR GAGA-motif binding transcriptional activa...    35   2.7  
tr|Q8S8C6|Q8S8C6_ARATH Expressed protein (Putative uncharacteriz...    34   4.6  
tr|Q6U1M9|Q6U1M9_ARATH Basic pentacysteine 4 OS=Arabidopsis thal...    34   4.6  
tr|B3NL37|B3NL37_DROER GG21612 OS=Drosophila erecta GN=GG21612 P...    34   4.6  
tr|B0NBG6|B0NBG6_EUBSP Putative uncharacterized protein OS=Clost...    34   6.0  
tr|Q9VXN1|Q9VXN1_DROME UBL3, isoform A OS=Drosophila melanogaste...    34   6.0  
tr|O97459|O97459_DROME HCG-1 OS=Drosophila melanogaster GN=UBL3 ...    34   6.0  
tr|A9PJQ5|A9PJQ5_POPJC Putative uncharacterized protein OS=Popul...    33   7.8  

>tr|B8LNW9|B8LNW9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 313

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 31/86 (36%), Positives = 43/86 (50%)
 Frame = +2

Query: 293 MNESGRMSMQHWAGFDCSHLKDCLKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVER 472
           M++ GR+ ++HW       L+  +KDHP +K                     KK A  E+
Sbjct: 1   MDDDGRLDIRHW-----DTLEQSVKDHPGLKFMSVLAERDAAILERNTAFSEKKAAFAEK 55

Query: 473 DAAFLQREVAYADRTVALNERDAAYA 550
           + A  QR+VAYADR  A+ ERDAA A
Sbjct: 56  ETAIFQRDVAYADRNTAILERDAAAA 81


>tr|B8LRA8|B8LRA8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 334

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 23/64 (35%), Positives = 34/64 (53%)
 Frame = +2

Query: 359 CLKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERD 538
           CLKD+  ++L                    KK A+ E++AA+ QR+ A+A R  A+ ERD
Sbjct: 22  CLKDYAMLRLISAKTERDAVIRERDKAIAEKKVAIAEKEAAYAQRDAAFAQRDEAIMERD 81

Query: 539 AAYA 550
           AA+A
Sbjct: 82  AAFA 85


>tr|B4FYC0|B4FYC0_MAIZE GAGA-binding transcriptional activator
           OS=Zea mays PE=2 SV=1
          Length = 330

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 25/63 (39%), Positives = 30/63 (47%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 31  LKDHQSMNLLALMNEKDSAIRERDHALAEKKAAIAERDMAFAQRDAAMAERNAAIVERDN 90

Query: 542 AYA 550
           A A
Sbjct: 91  ALA 93


>tr|Q5VSA8|Q5VSA8_ORYSJ Os06g0130600 protein OS=Oryza sativa subsp.
           japonica GN=P0493C11.7 PE=2 SV=1
          Length = 331

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 25/63 (39%), Positives = 30/63 (47%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 33  LKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDN 92

Query: 542 AYA 550
           A A
Sbjct: 93  ALA 95


>tr|A3B819|A3B819_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019191 PE=4 SV=1
          Length = 307

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 25/63 (39%), Positives = 30/63 (47%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 33  LKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDN 92

Query: 542 AYA 550
           A A
Sbjct: 93  ALA 95


>tr|A2Y8V8|A2Y8V8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21488 PE=4 SV=1
          Length = 274

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 25/63 (39%), Positives = 30/63 (47%)
 Frame = +2

Query: 362 LKDHPAMKLXXXXXXXXXXXXXXXXXXXXKKTALVERDAAFLQREVAYADRTVALNERDA 541
           LKDH +M L                    KK A+ ERD AF QR+ A A+R  A+ ERD 
Sbjct: 33  LKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDN 92

Query: 542 AYA 550
           A A
Sbjct: 93  ALA 95


>tr|A1E2T9|A1E2T9_MEDTR GAGA-binding transcriptional activator
           OS=Medicago truncatula GN=BBR/BPC6 PE=2 SV=1
          Length = 318

 Score = 42.0 bits (97), Expect = 0.022
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAAYA 550
           KK AL ERD AFLQR+ A A+R  AL ERD A A
Sbjct: 35  KKAALAERDMAFLQRDTAIAERNNALMERDNAIA 68


>tr|Q0PWL2|Q0PWL2_CARPT GAGA-binding transcriptional activator
           OS=Cardamine pratensis GN=BBR/BPC6 PE=2 SV=1
          Length = 342

 Score = 40.4 bits (93), Expect = 0.064
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAA 544
           KK A+ ERD AFLQR+ A A+R  A+ ERD+A
Sbjct: 51  KKAAIAERDMAFLQRDTAIAERNNAIMERDSA 82


>tr|Q9FIG5|Q9FIG5_ARATH Gb|AAF18661.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 301

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAA 544
           KK A+ ERD AFLQR+ A A+R  A+ ERD+A
Sbjct: 52  KKAAVAERDMAFLQRDTAIAERNNAIMERDSA 83


>tr|Q8L999|Q8L999_ARATH Putative uncharacterized protein
           (GAGA-binding transcriptional activator) (Putative
           uncharacterized protein At5g42520) (At5g42520) (Basic
           pentacysteine 6) OS=Arabidopsis thaliana GN=BBR/BPC6
           PE=2 SV=1
          Length = 342

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +2

Query: 449 KKTALVERDAAFLQREVAYADRTVALNERDAA 544
           KK A+ ERD AFLQR+ A A+R  A+ ERD+A
Sbjct: 52  KKAAVAERDMAFLQRDTAIAERNNAIMERDSA 83