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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960403
Clone id TST39A01NGRL0007_F05
Library
Length 669
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_F05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGAGCCATAGCTACCGTTCGGAAGAGTCAATAGTGACACGCAGGATCGATTATTACTGCC
ACGAAGCACCTCATTTGAACAACCCGAAAAAAGGATTCAAATGCCGTCCTCGTCTTCTGC
TACCGCACAGAAGAGCAATGGCGACCTTCAGAAGCAACCCGAGAGAGGCCCCGGCCCTGG
CAAGTTCGACAGAAAGGCCTTCGAGCTGAAGGTGGAAAAGGCCAAAAATGGCGCTCTCCG
CGGCGCTGTTCTCCACCTCCTCTCTCGCTTCTTTGGCTACTGCGCTCTCACCTGGGCCAC
CGTTGTCCTTCTCGGCGGCTTCTCCTCCAGCCTCCACATCCTCGACTTCTTCCTCATCAG
CTGCCTCCTCCTCCTTGAAGGCGCCCGTCTCTTCATCGTCCAGGTCTTCAGCAAGATCTT
GTCCAAAACCTTCTTCCGCGAGAGCCATCGTCCTGAATATTTCGAGTTCAAGGATATGCA
GTACTCCAAAGCCAACCGCATGGACATGTATGGTCAAGCCATCAGTGGCATCTTGGCCTT
TGCAAGCTTCATTGCCGCCATGGTCCGCTTTGGCCTCCATGAAGACCCTCCCCTCTCTGG
CGTTGGTTCTGACGAAAACAGAGATCTTGTGTATGCACTCTATGCCTTCTACTTGCTTGT
CATACTTAA
■■Homology search results ■■ -
sp_hit_id Q9R002
Definition sp|Q9R002|IFI2_MOUSE Interferon-activable protein 202 OS=Mus musculus
Align length 67
Score (bit) 31.6
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960403|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F05, 5'
         (669 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9R002|IFI2_MOUSE Interferon-activable protein 202 OS=Mus mus...    32   4.0  
sp|Q7SDW6|EAF6_NEUCR Chromatin modification-related protein eaf-...    31   5.2  
sp|Q6AEE9|GATB_LEIXX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    31   6.8  
sp|Q9USP1|ELP4_SCHPO Elongator complex protein 4 OS=Schizosaccha...    31   6.8  
sp|P14335|POLG_KUNJM Genome polyprotein OS=Kunjin virus (strain ...    30   8.8  
sp|O35368|IFI3_MOUSE Interferon-activable protein 203 OS=Mus mus...    30   8.9  
sp|Q39982|CRTW_HAEPL Beta-carotene ketolase OS=Haematococcus plu...    30   8.9  

>sp|Q9R002|IFI2_MOUSE Interferon-activable protein 202 OS=Mus
           musculus GN=Ifi202 PE=1 SV=2
          Length = 445

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 24/67 (35%), Positives = 30/67 (44%)
 Frame = +2

Query: 56  LPRSTSFEQPEKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKNGA 235
           L  ST+ E  E + Q PSS S+      G  + QP+  PGP K        K    K   
Sbjct: 6   LRSSTNSEFSEGQHQTPSSDSS------GHGEDQPQASPGPNK--------KSHTPKKNI 51

Query: 236 LRGAVLH 256
            +GAVLH
Sbjct: 52  SKGAVLH 58


>sp|Q7SDW6|EAF6_NEUCR Chromatin modification-related protein eaf-6
           OS=Neurospora crassa GN=eaf-6 PE=3 SV=1
          Length = 179

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 59  PRSTSFEQPEKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKN--G 232
           P STSF   +     P+ +SATA K+N   +K    G G G  D +    + +KA+   G
Sbjct: 117 PVSTSFNNKDGASSAPTPTSATAGKANSKKKKAATSG-GAGVEDSETDSRETKKARTNFG 175

Query: 233 ALR 241
           A+R
Sbjct: 176 AVR 178


>sp|Q6AEE9|GATB_LEIXX Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Leifsonia xyli subsp. xyli
           GN=gatB PE=3 SV=1
          Length = 499

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 93  LFSGCSNEVLRGSNNRSCVSLLTLPNG 13
           +F GC+NE   G+N  +C + L LP G
Sbjct: 34  MFCGCANEFGSGANTNTCPTCLGLPGG 60


>sp|Q9USP1|ELP4_SCHPO Elongator complex protein 4
           OS=Schizosaccharomyces pombe GN=elp4 PE=2 SV=1
          Length = 361

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +3

Query: 462 SSSRICSTPKPTAWTCMVKPSVAS---WPLQASLPPWSALASMKTLPSLALVLTKTEILC 632
           S +R  ST  P     +V PS+ S   + ++A+ P    +  + TL SL    T   ++C
Sbjct: 188 SLTRFLSTLTPGTVCRLVLPSILSPAFYSIRATHPQ-HFIRFIHTLSSLIKCTTSVHLIC 246

Query: 633 MHSMPSTCLS 662
           M S+PST  S
Sbjct: 247 MCSVPSTLFS 256


>sp|P14335|POLG_KUNJM Genome polyprotein OS=Kunjin virus (strain
            MRM61C) PE=1 SV=1
          Length = 3433

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +1

Query: 85   RKKDSNAVLVFCYRTEEQWRPSEATRERPRPWQV----RQKGLRAE 210
            RK +SNA L   +  + QWR +    E P+ W++    R+  LR E
Sbjct: 2931 RKVNSNAALGAMFEEQNQWRSAREAVEDPKFWEMVDEEREAHLRGE 2976


>sp|O35368|IFI3_MOUSE Interferon-activable protein 203 OS=Mus
           musculus GN=Ifi203 PE=1 SV=1
          Length = 408

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
 Frame = +2

Query: 20  GRVNSDTQDRLLLPRSTS---------FEQPEKRIQMPSSSSATAQKSNGDLQKQPERGP 172
           G+    TQ++  LP ++           + P K    PSSSS+      G + K+P R  
Sbjct: 140 GKKKKLTQEQAQLPETSGTNIKKEEDCLQNPHKSPPTPSSSSSNKAPRRGTVPKEPSREE 199

Query: 173 GPGKFDRKAFELKV 214
           G  +  ++   LKV
Sbjct: 200 GHHQGPKQVMVLKV 213


>sp|Q39982|CRTW_HAEPL Beta-carotene ketolase OS=Haematococcus
           pluvialis PE=2 SV=1
          Length = 320

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 230 HFWPFPPSARRPFCRTCQGRGL 165
           H WPF P  + P CR   GRGL
Sbjct: 294 HRWPFAPWWQLPHCRRLSGRGL 315
tr_hit_id Q1PE83
Definition tr|Q1PE83|Q1PE83_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana
Align length 54
Score (bit) 43.5
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960403|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F05, 5'
         (669 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1PE83|Q1PE83_ARATH Putative uncharacterized protein OS=Arabi...    44   0.012
tr|O23286|O23286_ARATH Putative uncharacterized protein dl3180w ...    44   0.012
tr|A2XGZ5|A2XGZ5_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.077
tr|B8B2V4|B8B2V4_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.17 
tr|Q8S936|Q8S936_ORYSA BLE2 protein OS=Oryza sativa GN=OsBLE2 PE...    39   0.22 
tr|Q8H493|Q8H493_ORYSJ Os07g0650600 protein OS=Oryza sativa subs...    39   0.22 
tr|Q10L20|Q10L20_ORYSJ Os03g0362200 protein OS=Oryza sativa subs...    39   0.22 
tr|A3BMW8|A3BMW8_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.22 
tr|A2YPE3|A2YPE3_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.22 
tr|A2XGZ6|A2XGZ6_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.22 
tr|A2XGZ1|A2XGZ1_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.22 
tr|Q2QPI5|Q2QPI5_ORYSJ Os12g0528100 protein OS=Oryza sativa subs...    39   0.29 
tr|Q9M8J7|Q9M8J7_ARATH F28L1.15 protein OS=Arabidopsis thaliana ...    39   0.38 
tr|Q10L11|Q10L11_ORYSJ Os03g0363100 protein OS=Oryza sativa subs...    39   0.38 
tr|B8APW6|B8APW6_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.38 
tr|B8BJR2|B8BJR2_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.50 
tr|A7NWE0|A7NWE0_VITVI Chromosome chr5 scaffold_2, whole genome ...    38   0.50 
tr|A5BW12|A5BW12_VITVI Putative uncharacterized protein OS=Vitis...    38   0.50 
tr|Q8RWU0|Q8RWU0_ARATH Putative uncharacterized protein At3g0621...    38   0.65 
tr|Q93ZV0|Q93ZV0_ARATH Putative uncharacterized protein At5g1898...    37   1.1  
tr|Q53LG6|Q53LG6_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.1  
tr|A3C9F6|A3C9F6_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.1  
tr|A2ZCD3|A2ZCD3_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.1  
tr|Q8LIE4|Q8LIE4_ORYSJ Os07g0648000 protein OS=Oryza sativa subs...    37   1.5  
tr|Q60ET8|Q60ET8_ORYSJ Putative uncharacterized protein OJ1122_B...    37   1.5  
tr|Q53P02|Q53P02_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.5  
tr|A3BMV3|A3BMV3_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.5  
tr|A2YPC4|A2YPC4_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.5  
tr|Q2QNX5|Q2QNX5_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.9  
tr|A3CI92|A3CI92_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.9  

>tr|Q1PE83|Q1PE83_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At4g14280 PE=2 SV=1
          Length = 798

 Score = 43.5 bits (101), Expect = 0.012
 Identities = 25/54 (46%), Positives = 28/54 (51%)
 Frame = +2

Query: 233 ALRGAVLHLLSRFFGYCALTWATVVLLGGFSSSLHXXXXXXXXXXXXXEGARLF 394
           ALR AVL  ++   G     WATVVLLGGF+ SL              EGARLF
Sbjct: 50  ALRLAVLEKIASGLGSLGFVWATVVLLGGFAGSLEITDFWFVTVILVIEGARLF 103


>tr|O23286|O23286_ARATH Putative uncharacterized protein dl3180w
           (Putative uncharacterized protein AT4g14280)
           OS=Arabidopsis thaliana GN=dl3180w PE=4 SV=1
          Length = 848

 Score = 43.5 bits (101), Expect = 0.012
 Identities = 25/54 (46%), Positives = 28/54 (51%)
 Frame = +2

Query: 233 ALRGAVLHLLSRFFGYCALTWATVVLLGGFSSSLHXXXXXXXXXXXXXEGARLF 394
           ALR AVL  ++   G     WATVVLLGGF+ SL              EGARLF
Sbjct: 50  ALRLAVLEKIASGLGSLGFVWATVVLLGGFAGSLEITDFWFVTVILVIEGARLF 103


>tr|A2XGZ5|A2XGZ5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11671 PE=4 SV=1
          Length = 857

 Score = 40.8 bits (94), Expect = 0.077
 Identities = 33/110 (30%), Positives = 45/110 (40%)
 Frame = +2

Query: 65  STSFEQPEKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKNGALRG 244
           S SF +P + +   S S   +    G  ++ PE+                 +    ALR 
Sbjct: 57  SASFFEPWREVTPGSGSGHGSSGRGGGGREPPEK-----------------RLTLFALRL 99

Query: 245 AVLHLLSRFFGYCALTWATVVLLGGFSSSLHXXXXXXXXXXXXXEGARLF 394
           AVL   +   G     WATVVLLGGF+S+L              EGAR+F
Sbjct: 100 AVLEKAASGLGMLDFMWATVVLLGGFASALKITDFWCVTVILVGEGARVF 149


>tr|B8B2V4|B8B2V4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23108 PE=4 SV=1
          Length = 822

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
 Frame = +2

Query: 86  EKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKNGALRG-AVLHLL 262
           E RIQ+P+ +S T                  G+ D KA     EK  N  +R  AV+  +
Sbjct: 10  EHRIQIPAVASET------------------GQADHKAVAAAPEKWLNYFVRLLAVIESV 51

Query: 263 SRFFGYCALTWATVVLLGGFSSSLHXXXXXXXXXXXXXEGARLF 394
               G  A TW TVVLLGG+ S+L              E  R+F
Sbjct: 52  GNALGTLAFTWGTVVLLGGYPSNLIKHDFVFATAIIFLEATRIF 95


>tr|Q8S936|Q8S936_ORYSA BLE2 protein OS=Oryza sativa GN=OsBLE2 PE=2
           SV=1
          Length = 761

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 86  EKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKNGALRG-AVLHLL 262
           E RIQ+P++ ++ +                 G  D KA     EK  N  LR  AV+  +
Sbjct: 11  EHRIQIPAAPASQS-----------------GPADHKAVAAAPEKWLNYFLRLLAVIESV 53

Query: 263 SRFFGYCALTWATVVLLGGFSSSL 334
              FG  A TWATVVLLGG+ + L
Sbjct: 54  GNAFGTLAFTWATVVLLGGYPTVL 77


>tr|Q8H493|Q8H493_ORYSJ Os07g0650600 protein OS=Oryza sativa subsp.
           japonica GN=P0427D10.142 PE=2 SV=1
          Length = 955

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 86  EKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKNGALRG-AVLHLL 262
           E RIQ+P++ ++ +                 G  D KA     EK  N  LR  AV+  +
Sbjct: 11  EHRIQIPAAPASQS-----------------GPADHKAVAAAPEKWLNYFLRLLAVIESV 53

Query: 263 SRFFGYCALTWATVVLLGGFSSSL 334
              FG  A TWATVVLLGG+ + L
Sbjct: 54  GNAFGTLAFTWATVVLLGGYPTVL 77


>tr|Q10L20|Q10L20_ORYSJ Os03g0362200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0362200 PE=4 SV=1
          Length = 852

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = +2

Query: 233 ALRGAVLHLLSRFFGYCALTWATVVLLGGFSSSLHXXXXXXXXXXXXXEGARLF 394
           +LR AVL   +   G     WATVVLLGGF+S+L              EGAR+F
Sbjct: 91  SLRLAVLEKAASGLGMLDFMWATVVLLGGFASALKITDFWCVTVILVGEGARVF 144


>tr|A3BMW8|A3BMW8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024390 PE=4 SV=1
          Length = 919

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 86  EKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKNGALRG-AVLHLL 262
           E RIQ+P++ ++ +                 G  D KA     EK  N  LR  AV+  +
Sbjct: 10  EHRIQIPAAPASQS-----------------GPADHKAVAAAPEKWLNYFLRLLAVIESV 52

Query: 263 SRFFGYCALTWATVVLLGGFSSSL 334
              FG  A TWATVVLLGG+ + L
Sbjct: 53  GNAFGTLAFTWATVVLLGGYPTVL 76


>tr|A2YPE3|A2YPE3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27138 PE=4 SV=1
          Length = 919

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 86  EKRIQMPSSSSATAQKSNGDLQKQPERGPGPGKFDRKAFELKVEKAKNGALRG-AVLHLL 262
           E RIQ+P++ ++ +                 G  D KA     EK  N  LR  AV+  +
Sbjct: 10  EHRIQIPAAPASQS-----------------GPADHKAVAAAPEKWLNYFLRLLAVIESV 52

Query: 263 SRFFGYCALTWATVVLLGGFSSSL 334
              FG  A TWATVVLLGG+ + L
Sbjct: 53  GNAFGTLAFTWATVVLLGGYPTVL 76


>tr|A2XGZ6|A2XGZ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11672 PE=4 SV=1
          Length = 823

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 173 GPGKFDRKAFELKVEKAKN-GALRGAVLHLLSRFFGYCALTWATVVLLGGFSSSLHXXXX 349
           G G+ DR       EK     ALR AVL   +   G     WATVVLLGGF+S+L     
Sbjct: 51  GSGRNDRGGGREPPEKRLTLFALRLAVLEKAASGLGKLDFVWATVVLLGGFASALSTTDF 110

Query: 350 XXXXXXXXXEGARLF 394
                     GAR+F
Sbjct: 111 WCVTVILVGSGARVF 125