DK960408 |
Clone id |
TST39A01NGRL0007_F10 |
Library |
TST39 |
Length |
438 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_F10. 5' end sequence. |
Accession |
DK960408 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL11Contig1 |
Sequence |
CGAATGTGAAGAAACCATCTTACAAGATGTCAACATGGACGAGGAAATGAGGAGGAAGCA GCAGCAACAGAGCCATGAAGCTTATGAGGAAGACGAGGAAGGTGGTTCTGGGCCAAGAGT GCAGTGTGCTCAACAGTAAGAGTACGACTTATGAAAGTCCAAGTGGGATTGAAATTCCAT TTAAGTAGTTCTCCCCCCTCAACTGGTGTGAGGAACAGGTTTCTTTTAATAGCTTGTCTT GCAGCGAAGACTGCCTTGGATACATCCCATGGACATAACTAATGCTCATCAGTCATCTTT AGACTAGATGGTGTGCCGTTAGGTTTTGAAGATGTGCTGGTATAGGATTTTTGGGCGTGT ATTGTAATTTGGGTACCATACTGTTTTATCATTTAAAAAGAACTTCTGATTGTTAAAAAA AAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q03363 |
Definition |
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Allium porrum |
Align length |
46 |
Score (bit) |
69.3 |
E-value |
6.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960408|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_F10, 5' (414 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Alliu... 69 6e-12 sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum GN... 69 7e-12 sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex nummu... 65 1e-10 sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus GN=... 59 1e-08 sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 OS=Arabidopsis th... 56 6e-08 sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 OS=Arabidopsis th... 55 8e-08 sp|Q873X0|PACC_GIBMO pH-response transcription factor pacC/RIM10... 34 0.26 sp|Q8BQ48|K1731_MOUSE Leucine-rich repeat-containing protein KIA... 32 0.76 sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription... 30 3.8 sp|Q8A0Y9|REX_BACTN Redox-sensing transcriptional repressor rex ... 30 3.8 sp|Q823B7|KTHY_CHLCV Thymidylate kinase OS=Chlamydophila caviae ... 30 3.8 sp|P02858|GLYG4_SOYBN Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1 30 4.9 sp|Q9HRY3|DNAJ_HALSA Chaperone protein dnaJ OS=Halobacterium sal... 30 4.9 sp|Q9P6R2|YOH8_SCHPO Uncharacterized protein C13E7.08c OS=Schizo... 29 6.5 sp|Q9Y6F6|MRVI1_HUMAN Protein MRVI1 OS=Homo sapiens GN=MRVI1 PE=... 29 6.5 sp|O74752|MAS5_SCHPO Mitochondrial protein import protein mas5 O... 29 6.5 sp|Q8VDQ9|KRI1_MOUSE Protein KRI1 homolog OS=Mus musculus GN=Kri... 29 6.5 sp|Q8N9T8|KRI1_HUMAN Protein KRI1 homolog OS=Homo sapiens GN=KRI... 29 6.5 sp|A7F8V8|DBP7_SCLS1 ATP-dependent RNA helicase dbp7 OS=Scleroti... 29 6.5 sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rer... 29 8.4 sp|Q5L5Y4|KTHY_CHLAB Thymidylate kinase OS=Chlamydophila abortus... 29 8.4
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1 Length = 397
Score = 69.3 bits (168), Expect = 6e-12 Identities = 32/46 (69%), Positives = 38/46 (82%), Gaps = 1/46 (2%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEG-GSGPRVQCAQQ 136 ECEET + DVN++EEMRRKQ Q + EAY+ED+EG G G RVQCAQQ Sbjct: 352 ECEETTMHDVNIEEEMRRKQHQHAQEAYDEDDEGHGGGQRVQCAQQ 397
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1 Length = 418
Score = 68.9 bits (167), Expect = 7e-12 Identities = 32/46 (69%), Positives = 38/46 (82%), Gaps = 1/46 (2%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEG-GSGPRVQCAQQ 136 ECEET + DVN++EEMRRKQ QQ+ EAY+ED+EG G RVQCAQQ Sbjct: 373 ECEETTMHDVNIEEEMRRKQHQQAQEAYDEDDEGHGGAQRVQCAQQ 418
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1 Length = 417
Score = 65.1 bits (157), Expect = 1e-10 Identities = 29/45 (64%), Positives = 35/45 (77%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 136 ECEET L +VN++EEM+RKQ Q EAY+ED+E G RVQCAQQ Sbjct: 373 ECEETTLHNVNIEEEMKRKQTQAQQEAYDEDDEPAGGQRVQCAQQ 417
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1 Length = 413
Score = 58.5 bits (140), Expect = 1e-08 Identities = 31/46 (67%), Positives = 35/46 (76%), Gaps = 1/46 (2%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEE-GGSGPRVQCAQQ 136 ECEET L DVN++EEMRRKQ Q EAY+EDE+ G RVQCAQQ Sbjct: 371 ECEETTLHDVNIEEEMRRKQAQ---EAYDEDEDMHGGAQRVQCAQQ 413
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2 Length = 420
Score = 55.8 bits (133), Expect = 6e-08 Identities = 29/49 (59%), Positives = 35/49 (71%), Gaps = 4/49 (8%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEG----GSGPRVQCAQQ 136 ECEET L DVN+++EMRRK Q Q EAY++D+E G RVQCAQQ Sbjct: 373 ECEETTLHDVNIEDEMRRKAQAQ-REAYDDDDEDDDHPGGAQRVQCAQQ 420
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2 Length = 419
Score = 55.5 bits (132), Expect = 8e-08 Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 2/47 (4%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEG--GSGPRVQCAQQ 136 +CEET L DVN+++EM+RK Q Q EAY++DEE G RVQCAQQ Sbjct: 374 DCEETTLHDVNIEDEMKRKAQAQ-REAYDDDEEDHPGGAQRVQCAQQ 419
>sp|Q873X0|PACC_GIBMO pH-response transcription factor pacC/RIM101 OS=Gibberella moniliformis GN=PAC1 PE=3 SV=1 Length = 613
Score = 33.9 bits (76), Expect = 0.26 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 2/106 (1%) Frame = -2
Query: 347 SYTSTSSKPNGTPSSLKMTDEH*LCPWDVSKAVFAARQAIKRNLFLTPVEGGELLKWNFN 168 S TS++S+ + PS+ +D++ +C W+ F A +A+ ++ V N Sbjct: 44 SATSSTSQSSTAPST--SSDDNLICRWNACNQKFPAPEALYEHICERHVGRKSTNNLNLT 101
Query: 167 PTWTFISRTLTV--EHTALLAQNHLPRLPHKLHGSVAAASSSFPRP 36 W RT TV +H + H+P PHK SF RP Sbjct: 102 CQWN-SCRTTTVKRDHITSHIRVHVPLKPHKCE----FCGKSFKRP 142
>sp|Q8BQ48|K1731_MOUSE Leucine-rich repeat-containing protein KIAA1731 OS=Mus musculus GN=Kiaa1731 PE=2 SV=3 Length = 2412
Score = 32.3 bits (72), Expect = 0.76 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 8/46 (17%) Frame = -2
Query: 146 RTLTVEHTALLAQNHLPRLPHKLHGSV--------AAASSSFPRPC 33 RTL + HTAL QN+L P LH A FPRPC Sbjct: 1389 RTLGLSHTALPQQNNLTAHPEHLHAQTNFFHSTEKAQEGLVFPRPC 1434
>sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription subunit 12 OS=Neurospora crassa GN=srb-8 PE=3 SV=1 Length = 1789
Score = 30.0 bits (66), Expect = 3.8 Identities = 9/31 (29%), Positives = 21/31 (67%) Frame = +2
Query: 23 QDVNMDEEMRRKQQQQSHEAYEEDEEGGSGP 115 Q ++ +++QQQQ ++ ++ ++GG+GP Sbjct: 1664 QQQQQSQQQQQQQQQQQYQLQQQQQQGGTGP 1694
>sp|Q8A0Y9|REX_BACTN Redox-sensing transcriptional repressor rex OS=Bacteroides thetaiotaomicron GN=rex PE=3 SV=1 Length = 220
Score = 30.0 bits (66), Expect = 3.8 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 5/110 (4%) Frame = -2
Query: 389 IKQYGTQITIHAQKSYTSTSSKPNGTP-----SSLKMTDEH*LCPWDVSKAVFAARQAIK 225 +K +G +I T + NG P LK +E+ DV V I Sbjct: 113 LKHFGLEIVAAFDVDPTLVGTNLNGIPIYHSDDFLKKMEEY-----DVQIGVLTVPIEIA 167
Query: 224 RNLFLTPVEGGELLKWNFNPTWTFISRTLTVEHTALLAQNHLPRLPHKLH 75 + + V+GG WNF P + + V++T+L A HL + ++L+ Sbjct: 168 QCITDMMVDGGIKAVWNFTPFRIRVPEDIVVQNTSLYA--HLAVMFNRLN 215
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PG12 |
Definition |
tr|A9PG12|A9PG12_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
47 |
Score (bit) |
73.6 |
E-value |
5.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960408|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_F10, 5' (414 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9PG12|A9PG12_POPTR Putative uncharacterized protein OS=Popul... 74 5e-12 tr|A7PKE8|A7PKE8_VITVI Chromosome chr15 scaffold_19, whole genom... 71 3e-11 tr|Q9ZWK3|Q9ZWK3_SALGI DnaJ homolog OS=Salix gilgiana GN=SGJ3 PE... 70 5e-11 tr|B4FJC3|B4FJC3_MAIZE Putative uncharacterized protein OS=Zea m... 70 5e-11 tr|Q0GLI7|Q0GLI7_ALLPO Molecular chaperone DjA2 OS=Allium porrum... 69 9e-11 tr|Q39812|Q39812_SOYBN Glycine max clone GMFP1 isoprenylated pro... 69 1e-10 tr|Q0PMD7|Q0PMD7_WHEAT J-domain protein OS=Triticum aestivum GN=... 69 2e-10 tr|Q949C1|Q949C1_ORYSA DnaJ-like protein OS=Oryza sativa GN=W930... 67 3e-10 tr|Q6H6G8|Q6H6G8_ORYSJ Putative DnaJ-like protein MsJ1 OS=Oryza ... 67 3e-10 tr|Q6F3B0|Q6F3B0_ORYSJ Os03g0787300 protein OS=Oryza sativa subs... 67 3e-10 tr|Q5NKI6|Q5NKI6_ORYSJ Putative DnaJ protein (Fragment) OS=Oryza... 67 3e-10 tr|Q0DYZ8|Q0DYZ8_ORYSJ Os02g0656500 protein OS=Oryza sativa subs... 67 3e-10 tr|B8AG47|B8AG47_ORYSI Putative uncharacterized protein OS=Oryza... 67 3e-10 tr|A9TW48|A9TW48_PHYPA Predicted protein OS=Physcomitrella paten... 67 3e-10 tr|A2XMP7|A2XMP7_ORYSI Putative uncharacterized protein OS=Oryza... 67 3e-10 tr|A9RML5|A9RML5_PHYPA Predicted protein OS=Physcomitrella paten... 67 4e-10 tr|A9T6M4|A9T6M4_PHYPA Predicted protein OS=Physcomitrella paten... 67 6e-10 tr|A9NK86|A9NK86_PICSI Putative uncharacterized protein OS=Picea... 67 6e-10 tr|Q9S7X7|Q9S7X7_SALGI DnaJ homolog protein OS=Salix gilgiana PE... 66 8e-10 tr|B7FGC0|B7FGC0_MEDTR Putative uncharacterized protein OS=Medic... 66 1e-09 tr|A9SP23|A9SP23_PHYPA Predicted protein OS=Physcomitrella paten... 65 2e-09 tr|Q9ZSZ6|Q9ZSZ6_HEVBR DnaJ protein OS=Hevea brasiliensis PE=2 SV=1 64 3e-09 tr|Q7X6U9|Q7X6U9_ORYSJ OSJNBb0034G17.1 protein (Putative unchara... 64 3e-09 tr|Q0JB88|Q0JB88_ORYSJ Os04g0549600 protein OS=Oryza sativa subs... 64 3e-09 tr|Q01ID9|Q01ID9_ORYSA OSIGBa0134H18.3 protein OS=Oryza sativa G... 64 3e-09 tr|A2XW64|A2XW64_ORYSI Putative uncharacterized protein OS=Oryza... 64 3e-09 tr|Q9FSF2|Q9FSF2_TOBAC Putative DNAJ protein OS=Nicotiana tabacu... 64 5e-09 tr|B0FFN7|B0FFN7_ORYSJ DnaJ family heat shock protein OS=Oryza s... 62 1e-08 tr|Q9M554|Q9M554_EUPES DnaJ protein OS=Euphorbia esula PE=2 SV=1 62 1e-08 tr|Q8GT37|Q8GT37_SOLTU Tuber-induction protein (Fragment) OS=Sol... 62 1e-08
>tr|A9PG12|A9PG12_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 422
Score = 73.6 bits (179), Expect = 5e-12 Identities = 35/47 (74%), Positives = 40/47 (85%), Gaps = 2/47 (4%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEE--GGSGPRVQCAQQ 136 ECEET L DVN++EEMRRKQQQQ+ EAY+ED+E GG G RVQCAQQ Sbjct: 376 ECEETTLHDVNIEEEMRRKQQQQAQEAYDEDDEMHGGGGQRVQCAQQ 422
>tr|A7PKE8|A7PKE8_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019136001 PE=4 SV=1 Length = 419
Score = 70.9 bits (172), Expect = 3e-11 Identities = 32/45 (71%), Positives = 37/45 (82%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 136 E EET L DVN++EEMRRKQQQQ HEAY+ED++ PRVQCAQQ Sbjct: 375 EAEETTLYDVNIEEEMRRKQQQQQHEAYDEDDDDFGAPRVQCAQQ 419
>tr|Q9ZWK3|Q9ZWK3_SALGI DnaJ homolog OS=Salix gilgiana GN=SGJ3 PE=2 SV=1 Length = 420
Score = 70.1 bits (170), Expect = 5e-11 Identities = 34/46 (73%), Positives = 38/46 (82%), Gaps = 1/46 (2%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEE-GGSGPRVQCAQQ 136 ECEET L DVN+DEEMRRKQQQQ+ EAY+ED+E G RVQCAQQ Sbjct: 375 ECEETTLHDVNIDEEMRRKQQQQAQEAYDEDDEMPGGAQRVQCAQQ 420
>tr|B4FJC3|B4FJC3_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 422
Score = 70.1 bits (170), Expect = 5e-11 Identities = 31/45 (68%), Positives = 38/45 (84%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 136 +CEET L DVN++EEMRR+QQQ+ EAY+EDEE + PRVQCAQQ Sbjct: 378 QCEETTLHDVNIEEEMRRRQQQKKQEAYDEDEEEDAQPRVQCAQQ 422
>tr|Q0GLI7|Q0GLI7_ALLPO Molecular chaperone DjA2 OS=Allium porrum PE=2 SV=1 Length = 418
Score = 69.3 bits (168), Expect = 9e-11 Identities = 32/46 (69%), Positives = 38/46 (82%), Gaps = 1/46 (2%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEG-GSGPRVQCAQQ 136 ECEET + DVN++EEMRRKQ Q + EAY+ED+EG G G RVQCAQQ Sbjct: 373 ECEETTMHDVNIEEEMRRKQHQHAQEAYDEDDEGHGGGQRVQCAQQ 418
>tr|Q39812|Q39812_SOYBN Glycine max clone GMFP1 isoprenylated protein (Fragment) OS=Glycine max PE=2 SV=1 Length = 86
Score = 68.9 bits (167), Expect = 1e-10 Identities = 32/45 (71%), Positives = 36/45 (80%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEEGGSGPRVQCAQQ 136 +CEET L DVN EEMRRKQQQQ EAY+ED++ SG RVQCAQQ Sbjct: 42 DCEETTLHDVNFKEEMRRKQQQQYREAYDEDDDEPSGQRVQCAQQ 86
>tr|Q0PMD7|Q0PMD7_WHEAT J-domain protein OS=Triticum aestivum GN=J3 PE=2 SV=1 Length = 420
Score = 68.6 bits (166), Expect = 2e-10 Identities = 31/47 (65%), Positives = 40/47 (85%), Gaps = 2/47 (4%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEE--GGSGPRVQCAQQ 136 ECEET+ D++++EEMRR+QQQQ+ EAY+EDE+ GG G RVQCAQQ Sbjct: 374 ECEETMAYDIDIEEEMRRRQQQQAQEAYDEDEDMPGGGGQRVQCAQQ 420
>tr|Q949C1|Q949C1_ORYSA DnaJ-like protein OS=Oryza sativa GN=W930ERIPDK PE=4 SV=1 Length = 420
Score = 67.4 bits (163), Expect = 3e-10 Identities = 30/47 (63%), Positives = 39/47 (82%), Gaps = 2/47 (4%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEE--DEEGGSGPRVQCAQQ 136 +CEET + DVN++EEMRR+QQ + EAY+E DE+ G+GPRVQCAQQ Sbjct: 374 QCEETTMHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ 420
>tr|Q6H6G8|Q6H6G8_ORYSJ Putative DnaJ-like protein MsJ1 OS=Oryza sativa subsp. japonica GN=P0519E06.27 PE=4 SV=1 Length = 416
Score = 67.4 bits (163), Expect = 3e-10 Identities = 30/47 (63%), Positives = 39/47 (82%), Gaps = 2/47 (4%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEE--DEEGGSGPRVQCAQQ 136 +CEET + DVN++EEMRR+QQ + EAY+E DE+ G+GPRVQCAQQ Sbjct: 370 QCEETTMHDVNIEEEMRRRQQHRRQEAYDEDDDEDAGAGPRVQCAQQ 416
>tr|Q6F3B0|Q6F3B0_ORYSJ Os03g0787300 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0024J04.9 PE=2 SV=1 Length = 417
Score = 67.4 bits (163), Expect = 3e-10 Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 2/47 (4%) Frame = +2
Query: 2 ECEETILQDVNMDEEMRRKQQQQSHEAYEEDEE--GGSGPRVQCAQQ 136 ECEET+ DVN++EEMRR+QQQQ EAY+EDE+ GG RVQCAQQ Sbjct: 371 ECEETMPYDVNIEEEMRRRQQQQQQEAYDEDEDMHGGGAQRVQCAQQ 417
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