DK960415
Clone id TST39A01NGRL0007_F18
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_F18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GTGGATAATCTACTGACTTGTAAGTTCTCTAGGTTTGGAGTCATGGTGTTTAGTCGCAGA
TCCTGCTAATCTTCCCGGCTGCGCTCGGCCATGGGTTTTTGATCGCTCACGATGCATTGC
CTTGCTGATCATTGGAGCTTTGGAGCTGTGCGTCCTTTTTCTGTCAAATTAATAGGCTGC
TTCAAATCTCTTCTTTCTTAGAAGCCGGATGTATTCTCCCTTTTACAGGAATGGTTTGGT
TGGCACTATCTGGCACAATGAATCATCCTCACTCTGTCATGAGCTTCGCTTCACTCACAG
GATCTCCTACAGGCCAGACGTTGCACCCCAGCCATTTTTCCTCGGTGTTCCCAGACTGTC
CTAACGAGCCTTCGCTAGACTTGAATTTTGTGCAAAAGCTGTCACAGAATAGCCAAAAGG
CACAGAATGAGTTTGAGCTAGGCCACAGCTTCCATCCTCACCACAATGAAAACAGTCCAA
ACTCTCAAATGGAGATAATAGCAAAGGTTGTACCTGAGTCCGTTGTATTTAATGATGGCC
AGGATAAGATGGCTATTGACAGTGTGCCTGTCAAAGCGGCACCACGGTCTCGCTGCCACT
GGTCT
■■Homology search results ■■ -
sp_hit_id Q42822
Definition sp|Q42822|RBS_GLYTO Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella
Align length 96
Score (bit) 32.0
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960415|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F18, 5'
(605 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q42822|RBS_GLYTO Ribulose bisphosphate carboxylase small chai... 32 2.5
sp|A5ISW6|EBH_STAA9 Extracellular matrix-binding protein ebh OS=... 32 3.3
sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh OS=... 32 3.3
sp|Q7A5M1|EBHB_STAAN Extracellular matrix-binding protein ebhB O... 32 3.3
sp|Q99U53|EBHB_STAAM Extracellular matrix-binding protein ebhB O... 32 3.3
sp|A7X2C5|EBHB_STAA1 Extracellular matrix-binding protein ebhB O... 32 3.3
sp|Q24167|SIMA_DROME Protein similar OS=Drosophila melanogaster ... 31 4.3
sp|Q99MV7|RNF17_MOUSE RING finger protein 17 OS=Mus musculus GN=... 31 5.6
sp|Q8NCF0|MRLP3_HUMAN Mannose receptor-like protein 3 OS=Homo sa... 31 5.6
sp|A5D8T8|MRLP2_HUMAN Mannose receptor-like protein 2 OS=Homo sa... 31 5.6
sp|Q6UXF7|MRLP1_HUMAN Mannose receptor-like protein 1 OS=Homo sa... 31 5.6
sp|Q8NM41|DEF2_CORGL Peptide deformylase 2 OS=Corynebacterium gl... 31 5.6
sp|Q5ZKL9|CL048_CHICK UPF0419 protein C12orf48 homolog OS=Gallus... 31 5.6
sp|Q99KE8|ZFP64_MOUSE Zinc finger protein 64 OS=Mus musculus GN=... 30 7.3
sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At... 30 7.3
sp|P22787|YIFB_ECOLI Uncharacterized protein yifB OS=Escherichia... 30 9.5
sp|Q42823|RBS_GLYTA Ribulose bisphosphate carboxylase small chai... 30 9.5

>sp|Q42822|RBS_GLYTO Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1
Length = 178

Score = 32.0 bits (71), Expect = 2.5
Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +3

Query: 204 AGCILPFTGMVWLALSGTMNHPHSVMSFASLTGSPTGQTLHPSHFSSVFPDCPNEPSLD- 380
AG + PFTG+ +A T + + S AS G + P+ F P LD
Sbjct: 19 AGTVAPFTGLKSMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDD 78

Query: 381 ---LNFVQKLSQNSQKAQNEFELGHSFHPHHNENSP 479
V+ L + EFEL H F N SP
Sbjct: 79 AQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSP 114


>sp|A5ISW6|EBH_STAA9 Extracellular matrix-binding protein ebh
OS=Staphylococcus aureus (strain JH9) GN=ebh PE=4 SV=1
Length = 10624

Score = 31.6 bits (70), Expect = 3.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3

Query: 405 QNSQKAQNEFELGHSFHPHHNENSPNSQMEIIAKVVPESVVFNDGQ 542
QNSQ +QN L + H NE NSQ ++ + V +S ND Q
Sbjct: 68 QNSQNSQNSQSLSAT---HENEQPNNSQANLVNQKVAQSSTTNDEQ 110


>sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh
OS=Staphylococcus aureus (strain JH1) GN=ebh PE=4 SV=1
Length = 10624

Score = 31.6 bits (70), Expect = 3.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3

Query: 405 QNSQKAQNEFELGHSFHPHHNENSPNSQMEIIAKVVPESVVFNDGQ 542
QNSQ +QN L + H NE NSQ ++ + V +S ND Q
Sbjct: 68 QNSQNSQNSQSLSAT---HENEQPNNSQANLVNQKVAQSSTTNDEQ 110


>sp|Q7A5M1|EBHB_STAAN Extracellular matrix-binding protein ebhB
OS=Staphylococcus aureus (strain N315) GN=ebhB PE=4 SV=1
Length = 3890

Score = 31.6 bits (70), Expect = 3.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3

Query: 405 QNSQKAQNEFELGHSFHPHHNENSPNSQMEIIAKVVPESVVFNDGQ 542
QNSQ +QN L + H NE NSQ ++ + V +S ND Q
Sbjct: 68 QNSQNSQNSQSLSAT---HENEQPNNSQANLVNQKVAQSSTTNDEQ 110


>sp|Q99U53|EBHB_STAAM Extracellular matrix-binding protein ebhB
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=ebhB PE=4 SV=1
Length = 3890

Score = 31.6 bits (70), Expect = 3.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3

Query: 405 QNSQKAQNEFELGHSFHPHHNENSPNSQMEIIAKVVPESVVFNDGQ 542
QNSQ +QN L + H NE NSQ ++ + V +S ND Q
Sbjct: 68 QNSQNSQNSQSLSAT---HENEQPNNSQANLVNQKVAQSSTTNDEQ 110


>sp|A7X2C5|EBHB_STAA1 Extracellular matrix-binding protein ebhB
OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=ebhB PE=4 SV=1
Length = 3890

Score = 31.6 bits (70), Expect = 3.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3

Query: 405 QNSQKAQNEFELGHSFHPHHNENSPNSQMEIIAKVVPESVVFNDGQ 542
QNSQ +QN L + H NE NSQ ++ + V +S ND Q
Sbjct: 68 QNSQNSQNSQSLSAT---HENEQPNNSQANLVNQKVAQSSTTNDEQ 110


>sp|Q24167|SIMA_DROME Protein similar OS=Drosophila melanogaster
GN=sima PE=2 SV=2
Length = 1507

Score = 31.2 bits (69), Expect = 4.3
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Frame = +3

Query: 219 PFTGMVWLALSGTMNHPHSVMSFASLTGSPTGQTLH-----------PSHFSS------- 344
PF+ M+ + L GT P + S S T S T H PS+ SS
Sbjct: 681 PFSDML-VGLMGTCLLPEDINSLDSTTCSTTASGQHYQSPSSSSTSAPSNTSSSNNSYAN 739

Query: 345 --VFPDCPNEPSLDLNFVQKLSQNSQKAQNEFELGHSFHPHHNENSPNS 485
+ P PN + N + Q Q + + HP H++NS +S
Sbjct: 740 SPLSPLTPNSTATASNPSHQQQQQHHNQQQQQQQQQQHHPQHHDNSNSS 788


>sp|Q99MV7|RNF17_MOUSE RING finger protein 17 OS=Mus musculus
GN=Rnf17 PE=1 SV=2
Length = 1640

Score = 30.8 bits (68), Expect = 5.6
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3

Query: 330 SHFSSVFPDCPNEPSLDLNFVQKLSQNSQKAQNEFELGHSFHPHHNENSPNSQ 488
S SS+ P N P LD+N + + S + EFE +P NE+ N Q
Sbjct: 270 SQVSSIIPR--NTPRLDINCSEAICMFSSMGKIEFEDSTKCYPQENEDGQNVQ 320


>sp|Q8NCF0|MRLP3_HUMAN Mannose receptor-like protein 3 OS=Homo
sapiens GN=MRLP3 PE=2 SV=2
Length = 446

Score = 30.8 bits (68), Expect = 5.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1

Query: 353 WEHRGKMAGVQRLACRRSCE*SEAHDRVRMIHCAR*CQPNHS 228
W+H G + V R CR SC + H R+ + C C P ++
Sbjct: 218 WDHAGGLCEVPRNPCRMSC---QNHGRLNISTCHCHCPPGYT 256


>sp|A5D8T8|MRLP2_HUMAN Mannose receptor-like protein 2 OS=Homo
sapiens GN=MRLP2 PE=2 SV=3
Length = 446

Score = 30.8 bits (68), Expect = 5.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1

Query: 353 WEHRGKMAGVQRLACRRSCE*SEAHDRVRMIHCAR*CQPNHS 228
W+H G + V R CR SC + H R+ + C C P ++
Sbjct: 218 WDHAGGLCEVPRNPCRMSC---QNHGRLNISTCHCHCPPGYT 256


tr_hit_id B6DTF9
Definition tr|B6DTF9|B6DTF9_9EUGL Putative uncharacterized protein OS=Bodo saltans
Align length 121
Score (bit) 37.4
E-value 0.68
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960415|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F18, 5'
(605 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6DTF9|B6DTF9_9EUGL Putative uncharacterized protein OS=Bodo ... 37 0.68
tr|A5FCH3|A5FCH3_FLAJ1 Alpha-L-rhamnosidase OS=Flavobacterium jo... 36 1.5
tr|Q835I7|Q835I7_ENTFA NAD-dependent formate dehydrogenase, alph... 36 2.0
tr|B4N0Z3|B4N0Z3_DROWI GK24846 OS=Drosophila willistoni GN=GK248... 36 2.0
tr|Q6BMX1|Q6BMX1_DEBHA DEHA2F01958p OS=Debaryomyces hansenii GN=... 35 3.4
tr|B6QHU4|B6QHU4_PENMA WD repeat protein OS=Penicillium marneffe... 35 3.4
tr|A9RJ40|A9RJ40_PHYPA Predicted protein OS=Physcomitrella paten... 35 4.4
tr|Q6CU54|Q6CU54_KLULA KLLA0C07535p OS=Kluyveromyces lactis GN=K... 35 4.4
tr|Q5KH22|Q5KH22_CRYNE Putative uncharacterized protein OS=Crypt... 35 4.4
tr|Q55SN5|Q55SN5_CRYNE Putative uncharacterized protein OS=Crypt... 35 4.4
tr|A0N0F7|A0N0F7_9GEMI AV1 OS=Tomato leaf curl New delhi virus -... 34 5.8
tr|B6BJ44|B6BJ44_9PROT Putative uncharacterized protein OS=Campy... 34 7.6
tr|A3CSK0|A3CSK0_METMJ (NiFe) hydrogenase maturation protein Hyp... 34 7.6
tr|Q55BK7|Q55BK7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.9

>tr|B6DTF9|B6DTF9_9EUGL Putative uncharacterized protein OS=Bodo
saltans PE=4 SV=1
Length = 881

Score = 37.4 bits (85), Expect = 0.68
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Frame = +3

Query: 249 SGTMNHPHSVMSFASLTGSPTGQTLHPSHFSSVFPDCPNEPSLDLNFVQKLSQNSQKAQN 428
SG +HP ++ +S T PS S V+P N P + L Q + Q Q+ +
Sbjct: 739 SGATHHPLQHVTLSSNTSDARSTLAAPSQLSRVYPSSANRPIVGLQATQMMMQQQQQQPS 798

Query: 429 EFELGHSFHPHHNENSPN-------SQMEIIAKVVPESVVFNDGQDKMAIDSVPVKAAPR 587
G + PN S + P +V Q + SVP +APR
Sbjct: 799 GVGRGPNPAAAPLATLPNGFVLVGSSSSNASSFQQPHRMVSQQQQQQQQQPSVPGTSAPR 858

Query: 588 S 590
S
Sbjct: 859 S 859


>tr|A5FCH3|A5FCH3_FLAJ1 Alpha-L-rhamnosidase OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=Fjoh_4085 PE=3 SV=1
Length = 926

Score = 36.2 bits (82), Expect = 1.5
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3

Query: 330 SHFSSVFPDCPNEPSLDLNFVQKLSQNSQKAQNEFELGHSFHPHHNENSPNSQME--IIA 503
S+F SVF DCP L +++++ N + L +F P +N +SQ E +I
Sbjct: 509 SNFQSVFTDCPQREK--LGWLEEIQLNGPSLMFNYNL-QTFLPATMQNISDSQRENGLIP 565

Query: 504 KVVPESVVF 530
+VPE V+F
Sbjct: 566 TIVPEYVIF 574


>tr|Q835I7|Q835I7_ENTFA NAD-dependent formate dehydrogenase, alpha
subunit OS=Enterococcus faecalis GN=fdhA PE=4 SV=1
Length = 906

Score = 35.8 bits (81), Expect = 2.0
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -3

Query: 567 AHCQ*PSYPGHH*IQ----RTQVQPLLLSPFESLDCFHCGEDGSCGLAQTHSVPFGYSVT 400
AHCQ H + R + LLLS + L+CF CG++G C L Q +++ +G VT
Sbjct: 74 AHCQEDMVVATHSEKVADSRRFILDLLLSNHK-LECFSCGKNGDCQL-QQYALDYGIDVT 131

Query: 399 AFAQNSSL 376
+F + +
Sbjct: 132 SFTEGKRM 139


>tr|B4N0Z3|B4N0Z3_DROWI GK24846 OS=Drosophila willistoni GN=GK24846
PE=4 SV=1
Length = 2546

Score = 35.8 bits (81), Expect = 2.0
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = +3

Query: 336 FSSVFPDCPNEPSLDLNFVQKLSQNSQKAQNEFELGHSFHPHHNENSPNSQMEIIAKVVP 515
F PDC N ++ LN +Q+ Q Q Q + G + P H + P +M +P
Sbjct: 506 FQQSAPDCFNNSNMGLNMLQQQQQQQQLRQQQQMRGLAPPPPHPQQQPQQRM----MTLP 561

Query: 516 ESVVFNDGQDKMAIDSVPVKAAPRSRCHWS 605
S GQ + + P+ A + H S
Sbjct: 562 MSQASPQGQQQFIGGASPLAAHSPASSHHS 591


>tr|Q6BMX1|Q6BMX1_DEBHA DEHA2F01958p OS=Debaryomyces hansenii
GN=DEHA2F01958g PE=4 SV=2
Length = 1007

Score = 35.0 bits (79), Expect = 3.4
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 21/114 (18%)
Frame = +3

Query: 258 MNHPHSVMSFASLTGSP-TGQTLHPSHFSSVFPDCPNEPSLDLNF------VQKLSQNSQ 416
+++ S++ L SP QT + S + P PSL+L+ Q+LSQ
Sbjct: 10 LSYSQSMLPSNLLVNSPYIQQTQNIVPMSPILPRQYAPPSLNLSHGNLAHHQQQLSQMHS 69

Query: 417 KAQNEFELGHSFHPHHNENSP-------NSQME-------IIAKVVPESVVFND 536
Q++ + HS HPH+ NSP NS +E +I K + E+V N+
Sbjct: 70 HHQHQNQQHHSQHPHYVPNSPYLTPLSSNSNLEQLNLSRTVILKNIDENVSLNE 123


>tr|B6QHU4|B6QHU4_PENMA WD repeat protein OS=Penicillium marneffei
ATCC 18224 GN=PMAA_095430 PE=4 SV=1
Length = 1082

Score = 35.0 bits (79), Expect = 3.4
Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 25/143 (17%)
Frame = +3

Query: 174 RLLQISSFLEAGCILPFTGMVWLALSGTMNHPHSVM------SFASLTGSPTGQTLHPSH 335
++ +SS+ A C + T+ H H V S A+L + T TLH H
Sbjct: 548 KIWDVSSYTNATCRM------------TLRHDHKVQIMARSPSIATLLATGTDSTLHLWH 595

Query: 336 FSSVFPDCPNEPSLDLNFV-QKLSQN------------------SQKAQNEFELGHSFHP 458
F SV C LDLN++ Q++++N S Q+ F G S +
Sbjct: 596 FDSVSQAC-----LDLNYMEQRITRNPRAIKESDFTPSSLAWGLSTLTQDLFVAGFSGNG 650

Query: 459 HHNENSPNSQMEIIAKVVPESVV 527
HH ++ + KV S+V
Sbjct: 651 HHGGDACREGLLAAWKVAQGSLV 673


>tr|A9RJ40|A9RJ40_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_66805 PE=4 SV=1
Length = 1483

Score = 34.7 bits (78), Expect = 4.4
Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Frame = +3

Query: 261 NHPHSVMSFASLTGSPTGQTLHPSHFSSVFPDCPNEPSLDLNFVQKLSQNSQKAQNEFEL 440
+H HSV SL SPTG S + D P+ P S S ++NE E+
Sbjct: 922 SHSHSVKDEESLPSSPTG--------SVIIKDTPSPPG---------SPASNYSENESEI 964

Query: 441 GHSFHPHHNENSPNSQMEIIAKVVPESV--VFNDGQDKMAIDSVPVKAAPR 587
H F H SP V P SV D D+ A + V PR
Sbjct: 965 -HEFQSHSRAKSP---------VSPRSVAHALEDDHDERAGSNTGVPQDPR 1005


>tr|Q6CU54|Q6CU54_KLULA KLLA0C07535p OS=Kluyveromyces lactis
GN=KLLA0C07535g PE=4 SV=1
Length = 624

Score = 34.7 bits (78), Expect = 4.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3

Query: 168 FDRKRTHSSKAPMISKAMHRERSKTHGRAQPGRLAGSATKHH 43
F RK+THSS ++ E+ + HGR+ P +GS HH
Sbjct: 9 FHRKKTHSSSQLSLASGATAEQERGHGRSSPS--SGSPNSHH 48


>tr|Q5KH22|Q5KH22_CRYNE Putative uncharacterized protein
OS=Cryptococcus neoformans GN=CNE01530 PE=4 SV=1
Length = 1393

Score = 34.7 bits (78), Expect = 4.4
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Frame = +3

Query: 216 LPFTGMVWLALSGTMNH-----PHSVMSFASL----TGSPTGQT-LHPSHFSSVFPDCPN 365
LP G V L G N+ P S+ S+ + SP+ LHP H S+ +P +
Sbjct: 444 LPGEGDVGLCQDGDTNYLIHATPTSLTSYPIIYSQHKASPSSSLQLHPGHSSAAYPSRSH 503

Query: 366 EPSLDLNFVQKLSQNSQKAQNEFELGHSFHPHHNENS 476
P+L+ + + + H HPH E+S
Sbjct: 504 TPNLESSDASSSLLRKSVSSSRLLDPHQSHPHEKEHS 540


>tr|Q55SN5|Q55SN5_CRYNE Putative uncharacterized protein
OS=Cryptococcus neoformans GN=CNBE1480 PE=4 SV=1
Length = 1457

Score = 34.7 bits (78), Expect = 4.4
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Frame = +3

Query: 216 LPFTGMVWLALSGTMNH-----PHSVMSFASL----TGSPTGQT-LHPSHFSSVFPDCPN 365
LP G V L G N+ P S+ S+ + SP+ LHP H S+ +P +
Sbjct: 444 LPGEGDVGLCQDGDTNYLIHATPTSLTSYPIIYSQHKASPSSSLQLHPGHSSAAYPSRSH 503

Query: 366 EPSLDLNFVQKLSQNSQKAQNEFELGHSFHPHHNENS 476
P+L+ + + + H HPH E+S
Sbjct: 504 TPNLESSDASSSLLRKSVSSSRLLDPHQSHPHEKEHS 540