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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960417
Clone id TST39A01NGRL0007_F20
Library
Length 402
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_F20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTGTTCAAAATGAATAATCAAAGATCCTTTCAATTCCAATTAGGAAAATCCAAATC
AGTCATTTAAATGTAATTACCGCTTTTGTGGCTACATCACAATGGGCATTAAGCATGCTA
CATAGTTGGCATTCCTCCTTCAAGCAATAGGCACCCTCCCCTAACAAAAGCAAAAAGGGC
TCTCTGACAACCCCCGTTTGACAATCCAATTATAAATATTTATAAAACCCGAGAAATATA
AATTGGGAAATATTTGGAAAAGAGCAAGCACTCCGAAAGCTCAAAGGAAGCATATGTACC
CATTGTGAAGTGCCCATGAATAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6S6U7
Definition sp|Q6S6U7|HELI_EHV1V Probable ATP-dependent helicase 57 OS=Equine herpesvirus 1 (strain V592)
Align length 52
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960417|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F20, 5'
         (309 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6S6U7|HELI_EHV1V Probable ATP-dependent helicase 57 OS=Equin...    33   0.34 
sp|P28934|HELI_EHV1B Probable ATP-dependent helicase 57 OS=Equin...    33   0.34 
sp|Q89AD4|SYQ_BUCBP Glutaminyl-tRNA synthetase OS=Buchnera aphid...    29   8.3  

>sp|Q6S6U7|HELI_EHV1V Probable ATP-dependent helicase 57 OS=Equine
           herpesvirus 1 (strain V592) GN=57 PE=3 SV=1
          Length = 881

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = -3

Query: 250 FQIFPNLYFSGFINIYNWIVKRGLSESPFCFC*GRVPIA*RRNANYVACLMP 95
           ++    L FSG IN YN++ + GL E       GRV  A RR A   A L+P
Sbjct: 547 YRFLSTLLFSGMINFYNFLKRPGLDE-------GRVREAYRRMAALTAKLIP 591


>sp|P28934|HELI_EHV1B Probable ATP-dependent helicase 57 OS=Equine
           herpesvirus 1 (strain Ab4p) GN=57 PE=3 SV=1
          Length = 881

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = -3

Query: 250 FQIFPNLYFSGFINIYNWIVKRGLSESPFCFC*GRVPIA*RRNANYVACLMP 95
           ++    L FSG IN YN++ + GL E       GRV  A RR A   A L+P
Sbjct: 547 YRFLSTLLFSGMINFYNFLKRPGLDE-------GRVREAYRRMAALTAKLIP 591


>sp|Q89AD4|SYQ_BUCBP Glutaminyl-tRNA synthetase OS=Buchnera
           aphidicola subsp. Baizongia pistaciae GN=glnS PE=3 SV=1
          Length = 550

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/73 (24%), Positives = 38/73 (52%)
 Frame = +1

Query: 91  QWALSMLHSWHSSFKQ*APSPNKSKKGSLTTPV*QSNYKYL*NPRNINWEIFGKEQALRK 270
           Q+A+ ++    +   Q +P   ++ +G+LTT    S Y+     +N+N  +F K +  + 
Sbjct: 109 QYAIKLIKKGLAYVDQLSPEEIRTFRGTLTTSGIDSPYRTQSIEKNLN--LFKKMKQGKM 166

Query: 271 LKGSICTHCEVPM 309
           L+G+ C   ++ M
Sbjct: 167 LEGTACLRAKIDM 179
tr_hit_id B4J461
Definition tr|B4J461|B4J461_DROGR GH22110 OS=Drosophila grimshawi
Align length 52
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960417|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F20, 5'
         (309 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4J461|B4J461_DROGR GH22110 OS=Drosophila grimshawi GN=GH2211...    35   1.9  
tr|B7FEJ9|B7FEJ9_9ALPH Component of DNA helicase-primase complex...    33   5.5  
tr|O39297|O39297_9ALPH 57 OS=Equid herpesvirus 4 PE=4 SV=1             33   9.4  

>tr|B4J461|B4J461_DROGR GH22110 OS=Drosophila grimshawi GN=GH22110
           PE=4 SV=1
          Length = 164

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 96  GIKHAT*LAFLLQAIGTLP*QKQKGLSDNPRLTIQL*IFIKPEKYKLGNIWK 251
           GI+HA    + L A    P  ++  L D+ +LT ++ I+  P+KY + N W+
Sbjct: 79  GIRHAKQKPYRLDATRVSPEMEKMLLEDHVKLTTEIPIYYLPDKYYVKNAWR 130


>tr|B7FEJ9|B7FEJ9_9ALPH Component of DNA helicase-primase complex
           OS=Equid herpesvirus 9 PE=4 SV=1
          Length = 881

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = -3

Query: 250 FQIFPNLYFSGFINIYNWIVKRGLSESPFCFC*GRVPIA*RRNANYVACLMP 95
           ++    L FSG IN YN++ + GL E       GRV  A RR A   A L+P
Sbjct: 547 YRFLSTLLFSGMINFYNFLKRPGLDE-------GRVREAYRRMAALTAKLIP 591


>tr|O39297|O39297_9ALPH 57 OS=Equid herpesvirus 4 PE=4 SV=1
          Length = 880

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -3

Query: 250 FQIFPNLYFSGFINIYNWIVKRGLSESPFCFC*GRVPIA*RRNANYVACLMP 95
           ++    L FSG IN YN++ + GL+E       G++  A RR A   A L+P
Sbjct: 547 YRFLSTLLFSGMINFYNFLKRPGLNE-------GKITEAYRRMAALTAKLVP 591