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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960419
Clone id TST39A01NGRL0007_F22
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_F22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGCATTTCGATCAAAGTTGCTCGATAAAACCCTCACCAGAGCGGCCGGGATGTTGAATCG
ACGGTCCTCTGTGTGTGGGCTTGTGGAGTGGAGTTTGTCATGAGGGCAGTGTCTGCAGGT
CGCGTCTTGTCTGGTGAGCTTTTGTGGTGGGAGCTGTTGGTCGACGCTTCGGAATGCTGT
GCTAGTCGTTTGAAGAAGAGCTTTTGGGGATCGGGAACAGGCGCAATGAAGAACATTGCA
GTGCAACGTAGACAGGCTCAGGCAGTCTGTCTCCTAGATAGTACCATGTGGAGCATGGGC
AAGGAAGCATATGCTGCCCTTGTCCTAAACATGAAGAAGCTGTTATTGGAGGCTAGATGT
ACCTACGGACCTGTTTCTGCTAGCACAGGGGAATGCTGCAGCACCTTTTCTGATTTTTTT
TCAAGAGGCGTTGCAGGGAGAAGTCAAATTTCGTCACCTTTTCACAAGTTGATGTCCTTG
GATGCCTTACCTAGTGATGGGTTTTCTGCAATGAAACTCCTTAAGAAAATGCAGCAGAGC
TGTGGTACAACCTTCTGCAGTGTCTCTTCCCATGGTTTGCCAGAGAAGAACAGGAACGTT
TATGACAAGGTTTACACAGATATCTACCAGGGGCCTGGAACTGACGCCTATCAAGCACAG
G
■■Homology search results ■■ -
sp_hit_id P34504
Definition sp|P34504|YMV2_CAEEL Uncharacterized protein K04H4.2 OS=Caenorhabditis elegans
Align length 120
Score (bit) 32.7
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960419|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F22, 5'
         (661 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34504|YMV2_CAEEL Uncharacterized protein K04H4.2 OS=Caenorha...    33   1.8  
sp|A6QLU5|ZN184_BOVIN Zinc finger protein 184 OS=Bos taurus GN=Z...    32   3.9  
sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protei...    32   3.9  
sp|O14628|ZN195_HUMAN Zinc finger protein 195 OS=Homo sapiens GN...    31   5.1  
sp|P51049|MR1BB_DANRE Melatonin receptor type 1B-B OS=Danio reri...    31   6.6  
sp|Q53G44|IF44L_HUMAN Interferon-induced protein 44-like OS=Homo...    31   6.7  
sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homol...    31   6.7  
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=...    30   8.6  
sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subu...    30   8.6  

>sp|P34504|YMV2_CAEEL Uncharacterized protein K04H4.2
           OS=Caenorhabditis elegans GN=K04H4.2 PE=1 SV=6
          Length = 1446

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
 Frame = -2

Query: 318 GSICFL-AHAPHGTI*ETDCLSLSTL-HC----------NVLHCACSRSPKALLQTTSTA 175
           G  C L  H P GT+ ET C S S   HC          N  H AC  SP  +++ + TA
Sbjct: 583 GKCCKLNIHCPDGTVPETSCQSASNHDHCPSSSHKCTLLNKEHFACCYSPGLVVEGSVTA 642

Query: 174 FRSVDQQLPPQKL---TRQDATCRHCPHDKLHSTSPHTEDRRFNIPAALVRVLSSNFDRN 4
              V  + P   +    R   +CR+     L   SP+  ++R    + LV   SS  + N
Sbjct: 643 --EVSSECPIGSVEVDPRFGTSCRY----SLQCPSPYFCNQRGQQASGLVCTFSSCSNSN 696


>sp|A6QLU5|ZN184_BOVIN Zinc finger protein 184 OS=Bos taurus
           GN=ZNF184 PE=2 SV=1
          Length = 752

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -1

Query: 622 YLCKPCHK--RSCSSLANHGKRHC-RRLYHSSAAFS*GVSLQKTHH*VRHPRTSTCEKVT 452
           Y C  C K  R CSSLA H K H   + YH +       +  ++ H  +H R  T EK  
Sbjct: 615 YECAECGKAFRHCSSLAQHQKTHTEEKPYHCNKCEK---AFSQSSHLAQHQRIHTGEKPY 671

Query: 451 K 449
           K
Sbjct: 672 K 672


>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein
           kinase BUB1 beta OS=Homo sapiens GN=BUB1B PE=1 SV=3
          Length = 1050

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = +1

Query: 448 ISSPFHKLMSLDALPSDGFSAM-------KLLKKMQQSCGTTFCSVSS 570
           +S+PFH++MSL  LPSD    +       K  +  Q +CGT +    S
Sbjct: 618 VSTPFHEIMSLKDLPSDPERLLPEEDLDVKTSEDQQTACGTIYSQTLS 665


>sp|O14628|ZN195_HUMAN Zinc finger protein 195 OS=Homo sapiens
           GN=ZNF195 PE=2 SV=2
          Length = 629

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 622 YLCKPCHK--RSCSSLANHGKRHCRRLYHSSAAFS*GVSLQKTHH*VRHPRTSTCEKVTK 449
           Y C+ C K  R+CSSL+NH + H     ++      G   ++     +H +T T EK  K
Sbjct: 466 YQCEECGKVFRTCSSLSNHKRTHSEEKPYTCEEC--GNIFKQLSDLTKHKKTHTGEKPYK 523

Query: 448 FD 443
            D
Sbjct: 524 CD 525


>sp|P51049|MR1BB_DANRE Melatonin receptor type 1B-B OS=Danio rerio
           GN=mtnr1bb PE=2 SV=2
          Length = 347

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 119 PADTALMTNSTPQAHTQRTVDSTSRPLW 36
           P + A +TNST   H  R + S++RP W
Sbjct: 2   PENIAFLTNSTDLGHVGRALGSSARPAW 29


>sp|Q53G44|IF44L_HUMAN Interferon-induced protein 44-like OS=Homo
           sapiens GN=IFI44L PE=2 SV=3
          Length = 452

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
 Frame = -2

Query: 600 NVPVLLWQTMGRDTAEG---CTTALLHFLK-------EFHCRKPIT 493
           ++P +L  TMG D AEG   C   + H LK       +F+ RKPIT
Sbjct: 255 SLPFMLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSRKPIT 300


>sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog
            OS=Homo sapiens GN=IFT172 PE=1 SV=2
          Length = 1749

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +1

Query: 463  HKLMSLDA--LPSDGFSAMKLLKKMQQSCGTTFCSVSSHGLPE--KNRNVYDKVYTDIYQ 630
            HK ++L A  L  +G SA  L   +Q            HG P   +N N+Y +++TD+  
Sbjct: 1443 HKYVALYATHLIREGSSAQALALYVQ------------HGAPANPQNFNIYKRIFTDMVS 1490

Query: 631  GPGTDAYQA 657
             PGT+  +A
Sbjct: 1491 SPGTNCAEA 1499


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
           GN=TPRXL PE=2 SV=1
          Length = 257

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 182 AQHSEASTNSSHHKSSPDK----TRPADTALMTNSTPQAHTQRTVDSTSRP 42
           + HS +S +SSH  SSP      + P+ ++  ++S+P +    +  S+S P
Sbjct: 67  SSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSP 117


>sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subunit
           rsc1 OS=Schizosaccharomyces pombe GN=rsc1 PE=1 SV=1
          Length = 803

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 215 PDPQKLFFKRLAQHSEASTNSSHHKSSPDKTRPADTALMTNST 87
           P     + ++ + HSE S++SS+H SS   T   ++ +M  ST
Sbjct: 568 PSVMPTYARKTSSHSERSSHSSYHNSSHVPTAAFNSPIMRTST 610
tr_hit_id B4GJX5
Definition tr|B4GJX5|B4GJX5_DROPE GL25966 OS=Drosophila persimilis
Align length 89
Score (bit) 37.4
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960419|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F22, 5'
         (661 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4GJX5|B4GJX5_DROPE GL25966 OS=Drosophila persimilis GN=GL259...    37   0.83 
tr|Q29P16|Q29P16_DROPS GA10918 OS=Drosophila pseudoobscura pseud...    37   1.4  
tr|Q6CY76|Q6CY76_KLULA KLLA0A02563p OS=Kluyveromyces lactis GN=K...    35   4.1  
tr|A9TBV0|A9TBV0_PHYPA Predicted protein OS=Physcomitrella paten...    35   4.1  
tr|B4N5N4|B4N5N4_DROWI GK17894 OS=Drosophila willistoni GN=GK178...    35   4.1  
tr|A1SRP3|A1SRP3_PSYIN ABC transporter foroligopeptide/dipeptide...    35   5.4  
tr|B4GKC5|B4GKC5_DROPE GL26055 OS=Drosophila persimilis GN=GL260...    34   7.0  
tr|Q0CIX5|Q0CIX5_ASPTN Putative uncharacterized protein OS=Asper...    34   7.1  
tr|B5DHE8|B5DHE8_DROPS GA25257 OS=Drosophila pseudoobscura pseud...    34   9.1  
tr|B4NZ08|B4NZ08_DROYA GE18306 OS=Drosophila yakuba GN=GE18306 P...    34   9.1  
tr|Q4SKY0|Q4SKY0_TETNG Chromosome 17 SCAF14563, whole genome sho...    34   9.2  
tr|A7AZG6|A7AZG6_RUMGN Putative uncharacterized protein OS=Rumin...    34   9.2  
tr|B4LK18|B4LK18_DROVI GJ21568 OS=Drosophila virilis GN=GJ21568 ...    34   9.2  
tr|A2ESZ2|A2ESZ2_TRIVA Surface antigen BspA-like OS=Trichomonas ...    34   9.2  

>tr|B4GJX5|B4GJX5_DROPE GL25966 OS=Drosophila persimilis GN=GL25966
            PE=4 SV=1
          Length = 1008

 Score = 37.4 bits (85), Expect = 0.83
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = +1

Query: 352  ARCTYGPVSASTGECCSTFSDFFSRGVAGRSQISSPFHKLMSLDALPSDGFSAMKLLKKM 531
            A  T GP  +S+   C        R +   +Q+ S  HK  ++  LP +  ++  L  K 
Sbjct: 757  AALTAGPPPSSSASACPYLLKQAGRSI---TQLLSASHKRNTMGTLPGEASTSTALPPKR 813

Query: 532  QQSCGTTFCSVSSHGLPEKNRNVYDKVYT 618
            Q+SCG    S +     EK   +  K YT
Sbjct: 814  QRSCGPRLSSTNPVDSTEKKFKILIKNYT 842


>tr|Q29P16|Q29P16_DROPS GA10918 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA10918 PE=4 SV=2
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 24/86 (27%), Positives = 37/86 (43%)
 Frame = +1

Query: 361  TYGPVSASTGECCSTFSDFFSRGVAGRSQISSPFHKLMSLDALPSDGFSAMKLLKKMQQS 540
            T GP  +S+   C        R +   +Q+ S  HK  ++  LP +  ++  L  K Q+S
Sbjct: 762  TAGPPPSSSASACPYLLKQAGRSI---TQLLSASHKRNTMGTLPGEASTSTALPPKRQRS 818

Query: 541  CGTTFCSVSSHGLPEKNRNVYDKVYT 618
            CG    S +     EK   +  K YT
Sbjct: 819  CGPRLSSTNPVDSTEKKFKILIKNYT 844


>tr|Q6CY76|Q6CY76_KLULA KLLA0A02563p OS=Kluyveromyces lactis
           GN=KLLA0A02563g PE=4 SV=1
          Length = 250

 Score = 35.0 bits (79), Expect = 4.1
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 227 IAPVPDPQKLFFKR--LAQHSEASTNSSHHKSSPDKTRPADTALMTNSTPQAHTQR 66
           IA V D  K  FKR  +  HS+++  ++H K+ PD+    DT L   ++ +A  +R
Sbjct: 134 IASVSDTAKKPFKRPIILSHSQSNLQNTHIKADPDRRLTEDTRLRQEASDKASAER 189


>tr|A9TBV0|A9TBV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90719 PE=4 SV=1
          Length = 177

 Score = 35.0 bits (79), Expect = 4.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -1

Query: 289 TWYYLGDRLPEPVYVALQCSSLRLFPIPKSSSSN 188
           TW  L  RLP  V V+LQC +LR F   K S +N
Sbjct: 33  TWLCLQRRLPRTVAVSLQCPALRFFGSKKESEAN 66


>tr|B4N5N4|B4N5N4_DROWI GK17894 OS=Drosophila willistoni GN=GK17894
           PE=4 SV=1
          Length = 352

 Score = 35.0 bits (79), Expect = 4.1
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
 Frame = +1

Query: 304 EAYAALVLNMKKLLLEARCTYGPVSASTGECCSTFSDFFSR---GVAGRSQISSPFHKLM 474
           EAY  L    K+ + +AR T    SA++    +T + ++SR   G  G    SS + +  
Sbjct: 51  EAYEVLSDARKRRIYDARATLHKSSATSSSSSNTSNGYYSRYRSGAGGGGSTSSSYGRDY 110

Query: 475 SLDALPS-------DGFSAMKLLKKMQQSCGTTFCSVSSHGLPEKNRNVYDKVYTD 621
             D  PS         F+   L +      GT F     H L EK R +YD+   D
Sbjct: 111 DYDYYPSRRSGNRYQAFTFRNLFE------GTPF-----HKLFEKKRRIYDEYGKD 155


>tr|A1SRP3|A1SRP3_PSYIN ABC transporter foroligopeptide/dipeptide
           ATP-binding protein OS=Psychromonas ingrahamii (strain
           37) GN=Ping_0292 PE=3 SV=1
          Length = 530

 Score = 34.7 bits (78), Expect = 5.4
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
 Frame = +1

Query: 91  EFVMRAVSAGRVLSGELLWWELLVDASECCASR-LKKSFWGSGT---GAMKNIAVQRRQA 258
           + ++ A  AG +   EL   +L++ A+    S  LKK+FWG  T    A+KN+++Q  Q+
Sbjct: 252 KLLLNAEPAGEMT--ELTAPQLILSAANINVSYPLKKNFWGKTTRSLQAVKNVSLQIHQS 309

Query: 259 QAVCLLDSTMWSMGKEAYAALVLNMKK 339
           + V ++  +    GK   A  +L + K
Sbjct: 310 ETVAIVGES--GSGKSTLAQAILQLNK 334


>tr|B4GKC5|B4GKC5_DROPE GL26055 OS=Drosophila persimilis GN=GL26055
           PE=4 SV=1
          Length = 832

 Score = 34.3 bits (77), Expect = 7.0
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = -3

Query: 224 APVPDPQKLFFKRLAQHSEASTNSSHHKSSPDKTRPADTALMTNSTPQAHTQRTVDSTS 48
           AP P P       LA+ S++ST++S+H S+ DKT   D  L+ NS P  +    V STS
Sbjct: 209 APAPAPAPALASTLARSSQSSTSTSNH-STTDKT---DLELIVNSNPN-YVPPKVRSTS 262


>tr|Q0CIX5|Q0CIX5_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_06359
           PE=4 SV=1
          Length = 1064

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 298 PCSTWYYLGDRLPEPVYVALQC-SSLRLFP-IPKSSSSND*HSIPKRRPTAPTTKAHQT 128
           PCS+WY+    L  P+  +L   S++   P +P SS S+  + IP    + PTT +  T
Sbjct: 78  PCSSWYFFSSPLLLPISASLPLFSAMTNSPFLPSSSPSSQRNDIPTMADSTPTTTSTLT 136


>tr|B5DHE8|B5DHE8_DROPS GA25257 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA25257 PE=4 SV=1
          Length = 830

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = -3

Query: 221 PVPDPQKLFFKRLAQHSEASTNSSHHKSSPDKTRPADTALMTNSTPQAHTQRTVDSTSR 45
           P P P       LA+ S++ST++S+H S+ DKT   D  L+ NS P     +   +T+R
Sbjct: 208 PAPAPAPALASTLARSSQSSTSTSNH-STTDKT---DLELIVNSNPNYVPPKVRSTTTR 262


>tr|B4NZ08|B4NZ08_DROYA GE18306 OS=Drosophila yakuba GN=GE18306 PE=4
           SV=1
          Length = 496

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 191 KRLAQHSEASTNSSHHKSSPDKTRPADTALMTNSTPQAHTQRTVDSTS 48
           KR  QH   ST  +HH+   + T P      +NST   H Q+  +ST+
Sbjct: 428 KRYHQHRSNSTTPNHHQQRSNSTTPNHHQQRSNSTTPNHHQQRSNSTT 475