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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960421
Clone id TST39A01NGRL0007_F24
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_F24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCAAATCGGCAAGCTTGCGCCGCGCAGCTAGTCTCTATCGATCAATATCAAACTTCCCA
GCCCTCTAATTCTACATGAAACCATCATCACTGTTCGCTCCGCGGCTCACTTGAAAAGAT
TTGGACCTTGTGTCAATCCATCCATCCTGATTTTTATCAGCAAATTATTATCACTGTTAT
TTAGCCAATTTGAGGACAATACAATGGGAGAAACCATATCTTGGATTGCAGAGAACAAGA
GTGGAGAAGTCTGCCTCGACTCCGACCTCCCGCCCCTTCCGAGAGGATAGGGAAAGGTGC
CTTGATCTGCAGTCAGGAGTCATGAACTTGAAGCAAATGAACCCACAACCAAGTGAATCC
AAAAGTGGTGGGATTGGCCAGAGCAGAGCAACAACCCATAAGAGACAGCGAGTATTGATC
GGCAATGACAACGGCTAAGGCGATCCCACGCTGCAGCTAAGCCTCTCATTACCCTCATCC
ACCAACACCCAATCTCATCCGAGCAATCCATCTTCACTTAGTGATGCAAACTCAATTGTC
AACAATGAGCTCAAATATTTATCATGTCGACCAGAAGATGCGACCACAGCGAACTCTCCT
CCTCAGAATGCCTCTGCCTCGTCGTCTTCATCATCCC
■■Homology search results ■■ -
sp_hit_id Q4R1I4
Definition sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri
Align length 36
Score (bit) 30.4
E-value 8.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960421|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F24, 5'
         (637 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN...    30   8.0  
sp|Q09YK4|CTTB2_ATEGE Cortactin-binding protein 2 OS=Ateles geof...    30   8.1  

>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4
           PE=1 SV=1
          Length = 706

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = -3

Query: 404 LLWVVALLWPIPPLLD-----SLGCGFIC-FKFMTP 315
           LLW+ +L+W +PPL       S G G  C F +MTP
Sbjct: 208 LLWIWSLVWALPPLFGWSAYVSEGFGTSCTFDYMTP 243


>sp|Q09YK4|CTTB2_ATEGE Cortactin-binding protein 2 OS=Ateles
           geoffroyi GN=CTTNBP2 PE=3 SV=1
          Length = 1660

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
 Frame = +1

Query: 316 GVMNLKQMNPQPSESKSGGIGQSRATTHKRQRVLI-----GNDNG*GDXXXXXXXXXXXX 480
           GV  + + NP P   K  G+ Q+ +  H + +VLI      N    GD            
Sbjct: 533 GVARVDRGNPPPIPPKKPGLSQTPSPPHPQLKVLIDSSRASNTGAKGDNKTV-------- 584

Query: 481 XXXXXHPSNPSSLSDANSIVNNELKYLSCRPE 576
                  S PSSL   N ++N E    S  P+
Sbjct: 585 ------ASPPSSLPQGNRVINEENLSKSSSPQ 610
tr_hit_id B7V4L9
Definition tr|B7V4L9|B7V4L9_PSEAE Putative uncharacterized protein OS=Pseudomonas aeruginosa LESB58
Align length 63
Score (bit) 34.7
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960421|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_F24, 5'
         (637 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7V4L9|B7V4L9_PSEAE Putative uncharacterized protein OS=Pseud...    35   5.0  
tr|B7UWP9|B7UWP9_PSEAE Putative uncharacterized protein OS=Pseud...    35   5.0  
tr|A5C5Y6|A5C5Y6_VITVI Putative uncharacterized protein OS=Vitis...    34   6.5  
tr|Q5KKX9|Q5KKX9_CRYNE GTP-binding protein, putative (Putative u...    34   6.5  

>tr|B7V4L9|B7V4L9_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa LESB58 GN=PLES_13291 PE=4 SV=1
          Length = 289

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 190 LRTIQWEKPYLGLQRTRVEKSASTPTSRP--FREDRERCLDLQSGVMNLKQMNPQPSESK 363
           + T Q + P++ ++R     SA  P  RP  F +   R +      +  + M PQP+ SK
Sbjct: 35  ITTSQIQPPFVAIRREVFPMSAEKPRERPILFNDQMVRAILDGRKTVTRRVMKPQPTPSK 94

Query: 364 SGG 372
           SGG
Sbjct: 95  SGG 97


>tr|B7UWP9|B7UWP9_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa LESB58 GN=PLES_25071 PE=4 SV=1
          Length = 312

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 190 LRTIQWEKPYLGLQRTRVEKSASTPTSRP--FREDRERCLDLQSGVMNLKQMNPQPSESK 363
           + T Q + P++ ++R     SA  P  RP  F +   R +      +  + M PQP+ SK
Sbjct: 58  ITTSQIQPPFVAIRREVFPMSAEKPRERPILFNDQMVRAILDGRKTVTRRVMKPQPTPSK 117

Query: 364 SGG 372
           SGG
Sbjct: 118 SGG 120


>tr|A5C5Y6|A5C5Y6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002322 PE=4 SV=1
          Length = 151

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
 Frame = -1

Query: 445 DRLSRCH-CRSILAVSYGLLLCSGQSH--HFWIH--LVVGSFASS 326
           D+L RCH CR+    SYGL++ S   H  HF IH   V+GS+ S+
Sbjct: 20  DKLFRCHKCRNRFQHSYGLIIPSSSYHHTHFRIHHDHVMGSYCSN 64


>tr|Q5KKX9|Q5KKX9_CRYNE GTP-binding protein, putative (Putative
           uncharacterized protein) OS=Cryptococcus neoformans
           GN=CNBC5780 PE=4 SV=1
          Length = 743

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = +1

Query: 256 STPTSRPFREDRERCLDLQSGVMNLKQMNP--------QPSESKSGGIGQSRATTHKRQR 411
           ST  S P R  RE+   L S   N     P        QP +++ GG G SR T +  QR
Sbjct: 644 STAASAPARSGREKASALDSVYFNESGAQPRLVIKGRNQPGDAQEGGQGFSRTTRYPHQR 703

Query: 412 VL 417
           +L
Sbjct: 704 LL 705