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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960432
Clone id TST39A01NGRL0007_G12
Library
Length 619
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_G12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCAGCAAGGAACAGGATACGAGGAGTGACTCTGAGGAGGGTGAACATCAAAGGAAAAGGA
AGGCACGCCATGACCATAAAGATGATAAGAAACACAAGCACAGTAAGCGACGAAAGCATA
AACACTCTGATTCAGAATCAGCAGATTCTGGTTTGTCAAGTGGTGATGACAGTACCCATG
AGCGCAAATCAAAGACCCATCGCCGTCATCATCACAGGAGAAAGAGATCACATAGTGAGC
GTGATGGTAAAGATGGGAAACGTGGGCATGGTAGGCACAAATCACATGATGATGATCTTG
GCCTTGATTCGTCCCAGAAGAAGAAGCATAAGCATACAAGGCGTCATGACGGATCTTCTA
GCGGTAGTGAGGATGAAATGTCTGGGAGTGGAAGGGTCACTTCTGAAAAACAGGGATCGA
GATCTGCAAGTGTGGAGAAAGAGAGGTTATCAAGTTCGGCCCATGCCAAGCATGGGAGTG
TGGTGGGTTTTCAGGGAAAATCTGCTGCAACTACAGAGGTGCCGGCAGATATCCGTGAGA
AAGTGAGAGTGATGCTTCTTTCGACTTTGTGAAGTTCTCTTTTCTCAAAGAACATGCAGT
TTGTGTAGTTGTACTTGTA
■■Homology search results ■■ -
sp_hit_id P29555
Definition sp|P29555|ABDA_DROME Homeobox protein abdominal-A OS=Drosophila melanogaster
Align length 109
Score (bit) 32.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960432|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_G12, 5'
         (619 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29555|ABDA_DROME Homeobox protein abdominal-A OS=Drosophila ...    32   2.6  
sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium ...    30   9.9  

>sp|P29555|ABDA_DROME Homeobox protein abdominal-A OS=Drosophila
           melanogaster GN=abd-A PE=2 SV=2
          Length = 590

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 32/109 (29%), Positives = 52/109 (47%)
 Frame = -2

Query: 615 STTTQTACSLRKENFTKSKEASLSLSHGYLPAPL*LQQIFPENPPHSHAWHGPNLITSLS 436
           S T+ T  S    + + +  ++L+LS G L +P  L Q   ++P      H P  ++S S
Sbjct: 69  SNTSNTNNSSSSPSSSSNNNSNLNLSGGSL-SPSHLSQHLGQSP------HSP--VSSSS 119

Query: 435 PHLQISIPVFQK*PFHSQTFHPHYR*KIRHDALYAYASSSGTNQGQDHH 289
           P  Q    V Q+   H Q  H H++ + +H   Y+  S++   Q Q HH
Sbjct: 120 PFQQHHPQVQQQHLNHQQQQHLHHQ-QQQHHHQYSSLSAALQLQQQQHH 167


>sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium
            channel subunit alpha-1B OS=Discopyge ommata PE=2 SV=1
          Length = 2326

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
 Frame = +3

Query: 303  LDSSQKKKHKHTR--RHXXXXXXXXXXXXXXXRVTSEKQGSRSASVEKERLSSSAHA--- 467
            LD + +++H+  R  RH               R +  K GSRS   E E +S S HA   
Sbjct: 919  LDDAPEREHRRHRSHRHGTEQQHREANGTKGERHSRAKDGSRSGGREGEAVSRSHHAEGA 978

Query: 468  ----KHGSVVGFQGKSAATTEVPADIREKV 545
                KH   V    +S    E+    RE V
Sbjct: 979  ERRRKHRQKVASTNESEEKREIGEKERETV 1008
tr_hit_id A9V4C2
Definition tr|A9V4C2|A9V4C2_MONBE Predicted protein OS=Monosiga brevicollis
Align length 53
Score (bit) 35.4
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960432|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_G12, 5'
         (619 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9V4C2|A9V4C2_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.7  
tr|A9UQ36|A9UQ36_MONBE Predicted protein OS=Monosiga brevicollis...    35   3.6  
tr|Q1ATW4|Q1ATW4_RUBXD Zinc finger, SWIM-type OS=Rubrobacter xyl...    34   6.1  

>tr|A9V4C2|A9V4C2_MONBE Predicted protein OS=Monosiga brevicollis
           GN=37869 PE=4 SV=1
          Length = 862

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 588 LRKENFTKSKEASLSLSHGYLPAPL*LQQIFPENPPHSHAWHGPNLITSLSPH 430
           LR+   T+S+ ASL   HG +     L ++  E+ P    WH  + + S +PH
Sbjct: 2   LRRRRTTQSRSASLEGPHGAIMNMELLDELSDEDEPDRFTWHNTSYVDSNTPH 54


>tr|A9UQ36|A9UQ36_MONBE Predicted protein OS=Monosiga brevicollis
            GN=30908 PE=4 SV=1
          Length = 1991

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -2

Query: 198  GSLICAHGYCHHHLTNQNLLILNQSVYAFVAYCACVSYHLYGHGVPSFSFDVHPPQSHS 22
            GS I  HG+  H   N  ++  +  VY         S+HL  HG P+ S DV PP  H+
Sbjct: 945  GSHIDPHGHMTHASVNAAIMPPSAGVYE-------PSHHLPRHGSPATSVDVPPPPDHN 996


>tr|Q1ATW4|Q1ATW4_RUBXD Zinc finger, SWIM-type OS=Rubrobacter
           xylanophilus (strain DSM 9941 / NBRC 16129) GN=Rxyl_2223
           PE=4 SV=1
          Length = 90

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 388 VEGSLLKNRDRDLQVWRKRGYQVRPMPSMGV 480
           +E S+ +   R L +WR RG ++RPMP+ G+
Sbjct: 2   IESSVARRARRGLALWRDRGAEIRPMPAGGL 32