DK960451 |
Clone id |
TST39A01NGRL0007_H07 |
Library |
TST39 |
Length |
780 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_H07. 5' end sequence. |
Accession |
DK960451 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL154Contig1 |
Sequence |
GGATCGTGGCTCTTTTGCTAGAGCTTCTGGTGACTATGTAATCGTTGTCAGCCATAATCC GGATAACAACACCACACGTATCAAGCTTCCCTCTGGAGCCAAGAAGATTGTGCCAAGTGG TTGCCGTGCAATGATTGGCCAAGTCGCAGGTGGAGGGAGAACTGAGAAACCTATGCTCAA GGCTGGTAATGCGTATCATAAATACAAGGTGAAACGCAACTGCTGGCCTAAAGTACGTGG TGTGGCAATGAACCCTGTTGAGCATCCCCATGGTGGTGGTAACCATCAACACATTGGGCA TGCCAGTACGGTCAGACGTGATGCTCCACCTGGGCAGAAGGTTGGTCTTATTGCTGCTAG GAGAACGGGTAGGTTGCGTGGACAGGCTGCTACTGCTGCTGCAAAGACAGATAAGAGTGC TTGAGGGCCATTTTGTAGGCTATTTGGCGTGAGCAGCTGTTTTCTGGTGGACATCTGCTG TCTAGCCTGTAGTCGTGAACATTTTAGTTTTTGGAAGATTACCACAAGTTTTGGACACAC ATTTTATGATTGAGAACGTTAATTTAAAGCTACGTTATATTGTCTCGCCTATCTGAAGAA AGGCCGAATACAACCCTGACAAGAATTCCTTTCGTGCCCTTCTCTGGGATTTGAAGGCGA ACAACCTCCCCCCACTTTTTCCTGCAAAACCTTTGGGTTGTTAAAAAAAAAAACCTTTCC CTTCTTTTTTTTTTTTGTAGAAAAAAAAAAGTTCAAAAATTCCAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P29766 |
Definition |
sp|P29766|RL8_SOLLC 60S ribosomal protein L8 OS=Solanum lycopersicum |
Align length |
117 |
Score (bit) |
239.0 |
E-value |
9.0e-63 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QDZ9 |
Definition |
tr|A7QDZ9|A7QDZ9_VITVI Chromosome chr4 scaffold_83, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
117 |
Score (bit) |
240.0 |
E-value |
7.0e-62 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960451|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_H07, 5' (763 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QDZ9|A7QDZ9_VITVI Chromosome chr4 scaffold_83, whole genome... 240 7e-62 tr|Q2XTD6|Q2XTD6_SOLTU Ribosomal protein L2-like OS=Solanum tube... 239 1e-61 tr|A7P133|A7P133_VITVI Chromosome chr19 scaffold_4, whole genome... 239 1e-61 tr|Q9LLS6|Q9LLS6_TOBAC 60S ribosomal protein L2 (Fragment) OS=Ni... 239 2e-61 tr|A5AW13|A5AW13_VITVI Putative uncharacterized protein (Chromos... 238 3e-61 tr|Q2QNF3|Q2QNF3_ORYSJ Os12g0567700 protein OS=Oryza sativa subs... 238 4e-61 tr|A9PCT0|A9PCT0_POPTR Putative uncharacterized protein OS=Popul... 238 4e-61 tr|A9PBZ5|A9PBZ5_POPTR Putative uncharacterized protein OS=Popul... 238 4e-61 tr|A2ZLS7|A2ZLS7_ORYSI Putative uncharacterized protein OS=Oryza... 238 4e-61 tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella paten... 234 5e-60 tr|B6TIQ9|B6TIQ9_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 234 6e-60 tr|B6TGT0|B6TGT0_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 234 6e-60 tr|B4F9R4|B4F9R4_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 234 6e-60 tr|Q9FEZ7|Q9FEZ7_SOYBN Ribosomal protein L2 OS=Glycine max GN=rp... 231 3e-59 tr|A8IVK1|A8IVK1_CHLRE Ribosomal protein L8 OS=Chlamydomonas rei... 211 4e-53 tr|Q9XFV0|Q9XFV0_9CHLO 60S ribosomal protein L2 OS=Chlamydomonas... 208 4e-52 tr|Q01B52|Q01B52_OSTTA Ribosomal protein L8, cytosolic-tomato sp... 204 7e-51 tr|Q8ITB4|Q8ITB4_AEQIR Ribosomal protein L OS=Aequipecten irradi... 199 1e-49 tr|Q1HR32|Q1HR32_AEDAE 60S ribosomal protein L2/L8 (60S ribosoma... 199 1e-49 tr|B8RIT1|B8RIT1_CULTA 60S ribosomal protein L8 OS=Culex tarsali... 199 1e-49 tr|B0VZP3|B0VZP3_CULQU 60S ribosomal protein L8 OS=Culex quinque... 199 1e-49 tr|A4RVW0|A4RVW0_OSTLU Ribosomal protein L8, component of cytoso... 198 3e-49 tr|B6RB82|B6RB82_HALDI Ribosomal protein l OS=Haliotis discus di... 197 5e-49 tr|Q57W56|Q57W56_9TRYP 60S ribosomal protein L2, putative OS=Try... 197 8e-49 tr|B8XVP5|B8XVP5_9DIPT 60S ribosomal protein L8 OS=Ochlerotatus ... 197 8e-49 tr|B2D2F5|B2D2F5_9ACAR 60S ribosomal protein L2/L8 (Fragment) OS... 197 8e-49 tr|Q5DF88|Q5DF88_SCHJA SJCHGC01239 protein OS=Schistosoma japoni... 196 1e-48 tr|Q4DPQ8|Q4DPQ8_TRYCR 60S ribosomal protein L2, putative OS=Try... 196 1e-48 tr|Q4D5K2|Q4D5K2_TRYCR 60S ribosomal protein L2, putative OS=Try... 196 1e-48 tr|B6DDR9|B6DDR9_ANODA 60S ribosomal protein L2/L8 OS=Anopheles ... 195 2e-48
>tr|A7QDZ9|A7QDZ9_VITVI Chromosome chr4 scaffold_83, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036802001 PE=4 SV=1 Length = 260
Score = 240 bits (613), Expect = 7e-62 Identities = 112/117 (95%), Positives = 114/117 (97%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FARASGDY IVVSHNPDN T+RIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK Sbjct: 122 DRGVFARASGDYAIVVSHNPDNGTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHKY+VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|Q2XTD6|Q2XTD6_SOLTU Ribosomal protein L2-like OS=Solanum tuberosum PE=2 SV=1 Length = 261
Score = 239 bits (611), Expect = 1e-61 Identities = 110/117 (94%), Positives = 113/117 (96%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FAR SGDY IV+SHNPDN TTR+KLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK Sbjct: 122 DRGVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHKY+VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|A7P133|A7P133_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027466001 PE=4 SV=1 Length = 260
Score = 239 bits (611), Expect = 1e-61 Identities = 110/117 (94%), Positives = 114/117 (97%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FARASGDY IVVSHNPDN T+RIKLPSGAKKI+PSGCRAM+GQVAGGGRTEKPMLK Sbjct: 122 DRGVFARASGDYAIVVSHNPDNGTSRIKLPSGAKKIIPSGCRAMVGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHKY+VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|Q9LLS6|Q9LLS6_TOBAC 60S ribosomal protein L2 (Fragment) OS=Nicotiana tabacum PE=2 SV=1 Length = 174
Score = 239 bits (609), Expect = 2e-61 Identities = 110/117 (94%), Positives = 113/117 (96%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FAR SGDY IV+SHNPDN TTRIKLPSG+KKIVPSGCRAMIGQVAGGGRTEKPMLK Sbjct: 36 DRGVFARCSGDYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLK 95
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHKY+VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 96 AGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 152
>tr|A5AW13|A5AW13_VITVI Putative uncharacterized protein (Chromosome chr12 scaffold_36, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00026101001 PE=4 SV=1 Length = 260
Score = 238 bits (607), Expect = 3e-61 Identities = 111/117 (94%), Positives = 114/117 (97%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FARASGDY IVVSHNPDN T+RIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK Sbjct: 122 DRGVFARASGDYSIVVSHNPDNGTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|Q2QNF3|Q2QNF3_ORYSJ Os12g0567700 protein OS=Oryza sativa subsp. japonica GN=Os12g0567700 PE=4 SV=1 Length = 261
Score = 238 bits (606), Expect = 4e-61 Identities = 110/117 (94%), Positives = 113/117 (96%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FARASGDY IV+SHNPDN T+RIKLPSGAKKIVPS CRAMIGQVAGGGRTEKPMLK Sbjct: 122 DRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHKY+VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|A9PCT0|A9PCT0_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 260
Score = 238 bits (606), Expect = 4e-61 Identities = 109/117 (93%), Positives = 114/117 (97%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FARASGDY IV+SHNPDN+TTRIKLPSG+KKIVPSGCR MIGQVAGGGRTEKPMLK Sbjct: 122 DRGVFARASGDYAIVISHNPDNDTTRIKLPSGSKKIVPSGCRGMIGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|A9PBZ5|A9PBZ5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 260
Score = 238 bits (606), Expect = 4e-61 Identities = 109/117 (93%), Positives = 114/117 (97%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FARASGDY IV+SHNPDN+TTRIKLPSG+KKIVPSGCR MIGQVAGGGRTEKPMLK Sbjct: 122 DRGVFARASGDYAIVISHNPDNDTTRIKLPSGSKKIVPSGCRGMIGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHK++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|A2ZLS7|A2ZLS7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38771 PE=4 SV=1 Length = 261
Score = 238 bits (606), Expect = 4e-61 Identities = 110/117 (94%), Positives = 113/117 (96%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG FARASGDY IV+SHNPDN T+RIKLPSGAKKIVPS CRAMIGQVAGGGRTEKPMLK Sbjct: 122 DRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHKY+VKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
>tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161945 PE=4 SV=1 Length = 260
Score = 234 bits (597), Expect = 5e-60 Identities = 109/117 (93%), Positives = 113/117 (96%) Frame = +2
Query: 2 DRGSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLK 181 DRG+FARASGDY IVVSHN D+ TTRIKLPSGAKK+VPSGCRAM+GQVAGGGRTEKPMLK Sbjct: 122 DRGAFARASGDYAIVVSHNVDSGTTRIKLPSGAKKVVPSGCRAMVGQVAGGGRTEKPMLK 181
Query: 182 AGNAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 352 AGNAYHKYKVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI Sbjct: 182 AGNAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238
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