DK960462
Clone id TST39A01NGRL0007_H20
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_H20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
TGAGAGAGCGAGAGAGAAAGAGGGTTTTCTTCTTCCCGCTTCTCCACATACACTCACTCC
CCCTCCCAGCGCGTGGCGGCCGCTTCTGCTCCTGAAGTCTGCAGCTTCCGGCTCCATTTT
CGAGCTCGCCATTGTTCCTGTACCTTGCCCCTCTACAGAAATTCGGCTTATTGCGGCTTC
CATGGCTCTGGCTGAAGTGGTGGCCGCGGCGCCTGACTCGGCTCACCATACAGGTGATCC
GGTTCGGACTATGGGTGGTGGTTTCAAAGGGGACCTACCTCAGGAACATGTTTCCGACGA
CAAGAATGGGGATGCTACTCAGTTTAAAAGATTAGATGGAGCAGCTGAAGCGGCCAATGC
TGGCTATAGTATACCTGTCTTGGCAAGCTATGATGGAGGTGTGGGATGTGATACAAGACA
CGTATTCTCTGGCATGCTTGCTGAGAATGGGCAGTCTATGTACTATGCCCCTGGTTATGA
GTTTCCACAGCAATCTCCTTATTGCTCACAGCCTCAAGGGGCTTACATGTCAAATATGGG
ATCTGGAACAACGGGGTACTGTGGACCGCAGTATGGGCCTTATTATCAGCAGGTGCCACC
TGGGCTTATGCAGTATTACCCTGC
■■Homology search results ■■ -
sp_hit_id Q9W4E2
Definition sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster
Align length 115
Score (bit) 33.9
E-value 0.69
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_H20, 5'
(624 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=... 34 0.69
sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus gen... 33 0.91
sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead... 31 4.5
sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subs... 31 4.5
sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle ... 31 4.5
sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287... 31 5.9
sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1... 31 5.9
sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing p... 30 7.7
sp|P40411|FEUC_BACSU Iron-uptake system permease protein feuC OS... 30 7.7
sp|P21409|FBPB_SERMA Fe(3+)-transport system permease protein sf... 30 7.7

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg
PE=1 SV=2
Length = 3584

Score = 33.9 bits (76), Expect = 0.69
Identities = 34/115 (29%), Positives = 45/115 (39%)
Frame = -2

Query: 569 AVHSTPLFQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHH 390
A HST T +P + S +A ++ Q H H QQ Q+ + PH H
Sbjct: 2071 ATHSTSSSASSTATSQPASSSSLSSLASQSQQQSHR--QLHKQQQQQQQQQQQQQPHYH- 2127

Query: 389 SLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYG 225
P Q +Y LI + HP KH E G +HP S P H +G
Sbjct: 2128 --PHQPHYG---------LINGHQQHP-QLNGKHYAENGSTAGYHPHSHP-HPHG 2169


>sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus genotype
2c (isolate BEBE1) PE=3 SV=3
Length = 3037

Score = 33.5 bits (75), Expect = 0.91
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Frame = +2

Query: 23 GFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEIRLIXXXXXXXXXX 202
G LP T PPP R ++L +S ++ ELAI CP
Sbjct: 2317 GCALPPPGTTPVPPPRRRRAVVLDQSNVGEALKELAIKSFGCPPP--------------- 2361

Query: 203 XXXXXXXHHTGDPVRTMGGGFKGDL---PQEHVSDDKNGDATQFKRLDG 340
+GDP + GGG G+ P + D + G + L+G
Sbjct: 2362 ---------SGDPGHSTGGGTTGETSKSPPDEPDDSEAGSVSSMPPLEG 2401


>sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead
virus PE=1 SV=1
Length = 1069

Score = 31.2 bits (69), Expect = 4.5
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = -2

Query: 233 LYGEPSQAPRPPLQPEPWKPQ*AEFL*RGKVQEQWRARKWSRKLQTSGAEAAAT 72
+YG P+QAP PP E E RG Q Q R + SG+ AAAT
Sbjct: 983 IYGSPNQAPAPPEFVEEVAAVLMENNGRGPNQAQMRELRLKALTMKSGSGAAAT 1036


>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp.
japonica GN=FH12 PE=3 SV=3
Length = 1669

Score = 31.2 bits (69), Expect = 4.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2

Query: 260 HHP*SEPDHLYGEPSQAPRPPLQPEP 183
HHP P +L GE AP PP P P
Sbjct: 1043 HHPPERPHYLPGEVGGAPSPPSPPPP 1068


>sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle
OS=Mus musculus GN=Clcn1 PE=2 SV=2
Length = 994

Score = 31.2 bits (69), Expect = 4.5
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2

Query: 8 AREKEGFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEI 163
A E+E ++P P T PPPS P L + A G + EL +V P E+
Sbjct: 922 APERE-VMVPTMPETPVPPPSPEAPSCLAPARAEGELEELEMVGSLEPEEEL 972


>sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287191
OS=Dictyostelium discoideum GN=DDB_G0287191 PE=4 SV=1
Length = 72

Score = 30.8 bits (68), Expect = 5.9
Identities = 23/83 (27%), Positives = 30/83 (36%)
Frame = -2

Query: 422 RVLYHIPHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SE 243
R+ YH + HHS P ++ + H HS H +HH S
Sbjct: 4 RLNYHHHNYHHSYPHHHHHHNY--------------HYHSYPHHH--------HHH--SH 39

Query: 242 PDHLYGEPSQAPRPPLQPEPWKP 174
H + PS P PP P P P
Sbjct: 40 HHHHHHLPSSPPSPPSPPSPPSP 62


>sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1
OS=Homo sapiens GN=HRCT1 PE=2 SV=1
Length = 115

Score = 30.8 bits (68), Expect = 5.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2

Query: 377 QVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLY 228
+V +Q WP + + H H HVP VG +HHP P HL+
Sbjct: 52 RVRRAQPWPFRRRGHLGIFHHHRHPGHVSHVPNVGLHHHHHPRHTPHHLH 101


>sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing
protein FLJ44005 OS=Homo sapiens PE=2 SV=1
Length = 233

Score = 30.4 bits (67), Expect = 7.7
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3

Query: 139 RNNG--ELENGAGSCRLQEQKRPPRAGRGSECMWRSGK 32
RN G ELE AGS R +EQ P GR W SG+
Sbjct: 7 RNRGLRELEEVAGSSRTREQLVPRLGGRAGYDWWASGE 44


>sp|P40411|FEUC_BACSU Iron-uptake system permease protein feuC
OS=Bacillus subtilis GN=feuC PE=1 SV=2
Length = 394

Score = 30.4 bits (67), Expect = 7.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1

Query: 541 IWNNGVLWTAVWALLSAGATWAYAVLP 621
+W NG +W+A W ++A W +P
Sbjct: 182 VWKNGSIWSANWTYITAVLPWMLLFIP 208


>sp|P21409|FBPB_SERMA Fe(3+)-transport system permease protein sfuB
OS=Serratia marcescens GN=fbpB PE=3 SV=2
Length = 527

Score = 30.4 bits (67), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1

Query: 487 TAISL---LLTASRGLHVK-YGIWNNGVLWTAVWALLSAGATWAYAVLPC 624
TA++L +T +R L + + +W N LW A+W LS A A + C
Sbjct: 295 TALALGVPFITLARWLWLGGFEVWRNAELWPALWQTLSLSAAGALLITLC 344


tr_hit_id B4N2C7
Definition tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni
Align length 115
Score (bit) 38.5
E-value 0.33
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960462|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_H20, 5'
(624 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK161... 39 0.33
tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116 ... 37 0.95
tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH2060... 36 1.6
tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI204... 36 2.1
tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI125... 35 2.8
tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein OS=Asper... 35 2.8
tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein OS=Soran... 35 4.7
tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesi... 35 4.7
tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum tricor... 35 4.7
tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas r... 35 4.7
tr|A3Z252|A3Z252_9SYNE Deoxyribodipyrimidine photolyase OS=Synec... 34 6.2
tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK205... 34 6.2
tr|B3EQ74|B3EQ74_CHLPB PGAP1 family protein OS=Chlorobium phaeob... 34 8.0
tr|Q2BC21|Q2BC21_9BACI Helicase, SWF/SNF family protein OS=Bacil... 34 8.0
tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment... 34 8.0
tr|Q0KHV9|Q0KHV9_DROME Rugose, isoform C OS=Drosophila melanogas... 34 8.0
tr|B7Z0X3|B7Z0X3_DROME Rugose, isoform D OS=Drosophila melanogas... 34 8.0
tr|B7Z0W8|B7Z0W8_DROME Rugose, isoform F OS=Drosophila melanogas... 34 8.0

>tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK16142
PE=4 SV=1
Length = 809

Score = 38.5 bits (88), Expect = 0.33
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Frame = -2

Query: 506 SNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHS-----LPRQVYYSQHWPLQL 342
+N + V+ H Q H+T H A +H+ H HH+ P ++ H +
Sbjct: 170 TNSAVNVKPHTQFHNTLAHHMTVAHHAAAAAHHV-HAHHAPHPHPHPHHSHHHHHHHAAM 228

Query: 341 LHLIF*T--E*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEP 183
H + HPH+ HVP VG + + P P P P L P+P
Sbjct: 229 AHHLLANGFHPHPHALALAHVPVVGGQQSTAAVAPP-----APPTLPPPTLMPQP 278


>tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116
PE=4 SV=1
Length = 793

Score = 37.0 bits (84), Expect = 0.95
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = -2

Query: 398 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 219
L H P Y ++ P H + E P H P P+ HP + P HL+G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHAVHPREYRPMHHEYPHPPRGPPMHRGHPHAHPHHLHGHP 269

Query: 218 ---SQAPRPPLQPEPWKP 174
AP P+ P P P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH20604
PE=4 SV=1
Length = 793

Score = 36.2 bits (82), Expect = 1.6
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Frame = -2

Query: 398 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 219
L H P Y ++ P H E P H P P+ HP + P HL+G P
Sbjct: 210 LDHRRPPVDPYDRYGPPLHPHAAHPREYRPMHHEYPHPPRGPPMHRGHPHTHPHHLHGHP 269

Query: 218 ---SQAPRPPLQPEPWKP 174
AP P+ P P P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI20446
PE=4 SV=1
Length = 791

Score = 35.8 bits (81), Expect = 2.1
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = -2

Query: 398 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 219
L H P Y ++ P H + E P H P P+ HP + P H++G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHSVHPREYRPMHHEYPHPPRGPPIHRGHPHAHPHHMHGHP 269

Query: 218 ---SQAPRPPLQPEPWKP 174
AP P+ P P P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI12500
PE=4 SV=1
Length = 788

Score = 35.4 bits (80), Expect = 2.8
Identities = 21/72 (29%), Positives = 29/72 (40%)
Frame = -2

Query: 548 FQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHSLPRQVY 369
F P L+ P+E + K+ + H H QQ Q + YH H Q +
Sbjct: 296 FSTPMLS--PMEIKTEKQQRQQQQQHQHQQQQQHQQQQQQHQQQQYHQQQQHQQQQHQQH 353

Query: 368 YSQHWPLQLLHL 333
Y QH+ Q HL
Sbjct: 354 YQQHYQQQQQHL 365


>tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein
OS=Aspergillus clavatus GN=ACLA_021280 PE=4 SV=1
Length = 122

Score = 35.4 bits (80), Expect = 2.8
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2

Query: 449 GQSMYYAPGYEFPQQSPYCSQPQ-GAYMSNMGSGTT 553
GQ MYY P +PQQ PY Q Q G Y G G++
Sbjct: 65 GQPMYYPPPQGYPQQQPYPPQQQPGYYADERGGGSS 100


>tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein
OS=Sorangium cellulosum (strain So ce56) GN=sce3477 PE=4
SV=1
Length = 486

Score = 34.7 bits (78), Expect = 4.7
Identities = 26/88 (29%), Positives = 31/88 (35%)
Frame = +2

Query: 284 EHVSDDKNGDATQFKRLDGAAEAANAGYSIPVLASYDGGVGCDTRHVFSGMLAENGQSMY 463
EHV D G GA A G +P GGVG F G +G Y
Sbjct: 66 EHVVDVPAGGGADVPNSGGADVPAGGGADVP----NGGGVGDRCAGPFPGEEPRDGSGYY 121

Query: 464 YAPGYEFPQQSPYCSQPQGAYMSNMGSG 547
PG +P +S G YM + G
Sbjct: 122 LKPGLLYPAES------SGVYMGQLSLG 143


>tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein
OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_03463 PE=4 SV=1
Length = 480

Score = 34.7 bits (78), Expect = 4.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -2

Query: 227 GEPSQAPRPPLQPEPWKP 174
G+P+ AP PP +PEPW+P
Sbjct: 154 GDPADAPEPPPEPEPWEP 171


>tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_43574 PE=4 SV=1
Length = 499

Score = 34.7 bits (78), Expect = 4.7
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3

Query: 378 SWQAMMEVWDVIQDTYSLACLLRM-GSLCTMPLVMSFHSNLLIAHSLKGLTCQIWDLEQR 554
SW ++VWD+ + CLL + GS L S+HS+ ++A T ++WD+
Sbjct: 347 SWDHSLKVWDMERQD----CLLTLNGSRVVSCLDTSYHSSGIVATGHPDCTVRLWDVRID 402

Query: 555 GTVDRSMGL 581
T + S+ L
Sbjct: 403 ATNESSLAL 411


>tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas
reinhardtii GN=VPS45 PE=4 SV=1
Length = 620

Score = 34.7 bits (78), Expect = 4.7
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Frame = +2

Query: 230 TGDPVRTMGGGFKGDLPQEHVSDDKNGDATQFKRL-----DGAAEAANAGYSIPVLASYD 394
TGD V T+ K P+E + G + + D A AANAG +P AS
Sbjct: 505 TGDEVATLTANAKRAPPREVIVFVLGGTTYEEAKAVAEMNDRANAAANAGPGVPAGASPS 564

Query: 395 GGVGCDTRHVFSGMLAENGQSMYYA--PGYEFPQQSPYCSQPQGAYMSNMGSG 547
GG R V G N Q A G PQ + QGA +++ GSG
Sbjct: 565 GGQLPTPRVVLGGTGILNSQMFLSALTSGLNIPQSA------QGAGVTSSGSG 611