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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960471
Clone id TST39A01NGRL0007_I06
Library
Length 372
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_I06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTTCTACGTTCCTTTCGCTGCTCGTTGCGCGCGAGCCTCACCACACGAGCGCCGCACACT
CCACAAAAGCCGCCAACCTACTACCATACCTCTGCTGTTAATGATTGGCGAGGCGCCCAA
CGCCCTCCTTTCTACGCGGAAAAGCTGTCAGGCTCAGGAGAGAACTATCCTTCCATCACG
GAACCATGATGAGCATGAACATTCCATCTTATAACGCCCTGCTTTTGGGCTCTGCACAGC
ATCGAGAAAATTCCTCTTGGTTTCTCCAATAGCACTGCCATGGACTCTCACGCTTCCCAC
CAACAATTTGGGCTGTGTGGGGAGATGAATGGGAGCGAAATTTTTTATTCTGGAGGGTGT
TGCTCTTCTCCC
■■Homology search results ■■ -
sp_hit_id Q6D4W6
Definition sp|Q6D4W6|ARAB_ERWCT Ribulokinase OS=Erwinia carotovora subsp. atroseptica
Align length 44
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960471|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_I06, 5'
         (358 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6D4W6|ARAB_ERWCT Ribulokinase OS=Erwinia carotovora subsp. a...    32   1.3  
sp|A7Z050|VIP1_BOVIN Inositol hexakisphosphate and diphosphoinos...    30   2.9  
sp|Q08271|GAS4_YEAST Glycolipid-anchored surface protein 4 OS=Sa...    30   3.8  
sp|Q6PFW1|VIP1_HUMAN Inositol hexakisphosphate and diphosphoinos...    30   4.9  
sp|Q87EI5|LPXB_XYLFT Lipid-A-disaccharide synthase OS=Xylella fa...    29   6.5  
sp|Q9PEI6|LPXB_XYLFA Lipid-A-disaccharide synthase OS=Xylella fa...    29   6.5  
sp|Q5RDF1|VIP1_PONAB Inositol hexakisphosphate and diphosphoinos...    29   8.4  
sp|A7HCD6|RLMN1_ANADF Ribosomal RNA large subunit methyltransfer...    29   8.5  

>sp|Q6D4W6|ARAB_ERWCT Ribulokinase OS=Erwinia carotovora subsp.
           atroseptica GN=araB PE=3 SV=1
          Length = 561

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 22  SLRASLTTRAPHTPQKPPTYYHTSAVNDWRGAQRPPFYAEKLSG 153
           ++ A L  R  H   + PT  H   V DW   +R PF  ++L G
Sbjct: 372 AMEAKLLERLTHNWAENPTLDHLPIVLDWFNGRRTPFANQRLKG 415


>sp|A7Z050|VIP1_BOVIN Inositol hexakisphosphate and
            diphosphoinositol-pentakisphosphate kinase 1 OS=Bos
            taurus GN=HISPPD2A PE=2 SV=1
          Length = 1477

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
 Frame = +1

Query: 40   TTRAPHTPQKPPTYYHTSAVNDWRGAQRPPFY----AEKLSGSGENYPSITEP**A*TFH 207
            + +A  +P  PP   H+  +   + +++PP+Y    +  +S +G + P+  +        
Sbjct: 1132 SNQASDSPFSPPRTLHSPTLQLQQRSEKPPWYSSGPSSTVSSAGPSSPTAVD-------- 1183

Query: 208  LITPCFWALHSIEKIPLGFSNSTAMDSHAS--HQQFGLCGEMNGS 336
                           P GFS+  ++ SH +  +Q  GL  E  GS
Sbjct: 1184 ------------GNCPFGFSDQPSVSSHVTEEYQGLGLLQEAPGS 1216


>sp|Q08271|GAS4_YEAST Glycolipid-anchored surface protein 4
           OS=Saccharomyces cerevisiae GN=GAS4 PE=3 SV=1
          Length = 471

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +1

Query: 97  VNDWRGAQRPPFYAEKLSGSGENYPSITEP**A*TFHLITPCFWALHSIEKIPLGFSNST 276
           VND R AQ  P Y ++L G+ +NY S                    HS   IP+G+S + 
Sbjct: 163 VNDKRSAQYSPAYVKELIGTMKNYIS-------------------AHSPRTIPVGYSAAD 203

Query: 277 AMDSHASHQQFGLC 318
            ++   S  ++  C
Sbjct: 204 DLNYRVSLSEYLEC 217


>sp|Q6PFW1|VIP1_HUMAN Inositol hexakisphosphate and
            diphosphoinositol-pentakisphosphate kinase 1 OS=Homo
            sapiens GN=HISPPD2A PE=1 SV=1
          Length = 1433

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
 Frame = +1

Query: 40   TTRAPHTPQKPPTYYHTSAVNDWRGAQRPPFY----AEKLSGSGENYPSITEP**A*TFH 207
            +++A   P  PP   H+  +   + +++PP+Y    +  +S +G + P+  +        
Sbjct: 1136 SSQASDNPFSPPRTLHSPPLQLQQRSEKPPWYSSGPSSTVSSAGPSSPTTVD-------- 1187

Query: 208  LITPCFWALHSIEKIPLGFSNSTAMDSHAS--HQQFGLCGEMNGS 336
                             GFS+  +++SH +  HQ  GL  E  GS
Sbjct: 1188 ------------GNSQFGFSDQPSLNSHVAEEHQGLGLLQETPGS 1220


>sp|Q87EI5|LPXB_XYLFT Lipid-A-disaccharide synthase OS=Xylella
           fastidiosa (strain Temecula1 / ATCC 700964) GN=lpxB PE=3
           SV=1
          Length = 385

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +3

Query: 114 RPTPSFLRGKAVRLRRELSFHHGTMMSMNIPSYNALLLGSAQHRENSSWFLQ*HCHGLSR 293
           R  P  L+ +    +R L++H   ++ ++ P +N  +           WF Q H   +  
Sbjct: 68  RHLPRLLKIRREFCKRALAWHPDVLIGIDAPDFNLTV---------ERWFKQRHIRTVHY 118

Query: 294 FPPTIWA 314
             P+IWA
Sbjct: 119 VSPSIWA 125


>sp|Q9PEI6|LPXB_XYLFA Lipid-A-disaccharide synthase OS=Xylella
           fastidiosa GN=lpxB PE=3 SV=1
          Length = 385

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/67 (23%), Positives = 29/67 (43%)
 Frame = +3

Query: 114 RPTPSFLRGKAVRLRRELSFHHGTMMSMNIPSYNALLLGSAQHRENSSWFLQ*HCHGLSR 293
           R  P  L+ +    +R L++H   ++ ++ P +N  +           WF Q H   +  
Sbjct: 68  RHLPRLLKIRREFCKRALAWHPDVLIGIDAPDFNLTV---------ERWFKQRHIRTVHY 118

Query: 294 FPPTIWA 314
             P+IWA
Sbjct: 119 VSPSIWA 125


>sp|Q5RDF1|VIP1_PONAB Inositol hexakisphosphate and
            diphosphoinositol-pentakisphosphate kinase 1 OS=Pongo
            abelii GN=HISPPD2A PE=2 SV=1
          Length = 1409

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
 Frame = +1

Query: 40   TTRAPHTPQKPPTYYHTSAVNDWRGAQRPPFY----AEKLSGSGENYPSITEP**A*TFH 207
            +++A   P  PP   H+  +   + +++PP+Y    +  +S +G + P+  +        
Sbjct: 1112 SSQASDNPFSPPRTLHSPPLQLQQRSEKPPWYSSGPSSTVSSAGPSSPTTVD-------- 1163

Query: 208  LITPCFWALHSIEKIPLGFSNSTAMDSHAS--HQQFGLCGEMNGS 336
                             GFS+  +++SH +  HQ  GL  E  GS
Sbjct: 1164 ------------GNSQFGFSDQPSLNSHVAEEHQGLGLLLETPGS 1196


>sp|A7HCD6|RLMN1_ANADF Ribosomal RNA large subunit methyltransferase
           N 1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rlmN1
           PE=3 SV=1
          Length = 377

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 218 GVIRWNVHAHHGSVMEG*FSPEPD 147
           G I+W    H G ++E  + PEPD
Sbjct: 87  GTIKWTWRTHDGKLVESVYMPEPD 110
tr_hit_id B4JFU4
Definition tr|B4JFU4|B4JFU4_DROGR GH18204 OS=Drosophila grimshawi
Align length 42
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960471|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_I06, 5'
         (358 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4JFU4|B4JFU4_DROGR GH18204 OS=Drosophila grimshawi GN=GH1820...    34   4.2  
tr|A7B7K0|A7B7K0_RUMGN Putative uncharacterized protein OS=Rumin...    33   5.5  
tr|A7PJU0|A7PJU0_VITVI Chromosome chr12 scaffold_18, whole genom...    33   5.5  
tr|A8P8W8|A8P8W8_COPC7 Putative uncharacterized protein OS=Copri...    33   7.2  
tr|B6NZI5|B6NZI5_BRAFL Putative uncharacterized protein OS=Branc...    33   9.4  

>tr|B4JFU4|B4JFU4_DROGR GH18204 OS=Drosophila grimshawi GN=GH18204
            PE=4 SV=1
          Length = 1273

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +3

Query: 138  GKAVRLRRELSFHHGTMMSMNIPSYNALLLGSAQHRENSSWF 263
            GK V + R+ S    TM+  N+P+  ALL   A++  N+S+F
Sbjct: 1048 GKLVHIDRQQSSSLSTMLEFNMPALTALLRWQAENNPNASYF 1089


>tr|A7B7K0|A7B7K0_RUMGN Putative uncharacterized protein
           OS=Ruminococcus gnavus ATCC 29149 GN=RUMGNA_03566 PE=4
           SV=1
          Length = 520

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 232 LHSIEKIPLGFSNSTAMDSHASHQQFGLCGEMNGSEIFYSGG 357
           LH   K+ +GFSN+ A + HA+ +  G   + NG+   Y  G
Sbjct: 159 LHMPRKLKVGFSNTPANEVHATFRDLGFVAKENGTFSVYCAG 200


>tr|A7PJU0|A7PJU0_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018876001
           PE=4 SV=1
          Length = 838

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 8   VPFAARCARASPHERRTL------HKSRQPTTIPLLLMIGEAPNALLSTRKS 145
           + FAA  A A  + RR L      H+SR    +PLLL IGE   AL    +S
Sbjct: 506 ISFAAVAAHADKNGRRKLAAMLVEHESRSSKQVPLLLSIGEEDTALTKATES 557


>tr|A8P8W8|A8P8W8_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_11362 PE=4 SV=1
          Length = 386

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -2

Query: 327 HLPTQPKLLVGSVRVHGSAIGETKRNFLDAVQSPKAGRYK 208
           H+PT  K   G+V +HG  IG  +RNF    +SP +  YK
Sbjct: 121 HIPTNDK--GGAVALHGGLIGWDRRNFTLVAKSPTSVTYK 158


>tr|B6NZI5|B6NZI5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_100977 PE=4 SV=1
          Length = 123

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 52  PHTPQKPP-TYYHTSAVNDWR---GAQRPPFYAEKLSGSGENYPSIT 180
           P +P  PP TY+H  AV   R   GA  PP Y     G+G N P  T
Sbjct: 66  PGSPSPPPVTYHHDPAVPTSRPPSGASPPPPYLNPEEGTGPNLPGQT 112