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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960476
Clone id TST39A01NGRL0007_I11
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_I11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
ATGCAAAGCAGGGAGCTGAAGTTCGGTTGTAGCGAGCTCATCAGCTGCAGCGCACAAGCT
GTGCAGTAATCCCCCCCTCTCTCACTGCCTTCTCGACAGCTAATCGAGGGATCTGGCTGG
ACCTAGGAGGGCCAGAATGAGAAGAATTCTGGGCCCCTACGGAGGTAGGCGAGGACAGAT
GGTTAGTAATCACCCATTCAAGCAGCTCACAACAATGATGAGATCGTTTGCGGGGGGCCT
TTTTGTATCTATAGCAGTGCTATTGTTGTGCACCTTCTCTCTCATGTCCCGCATTCGAGA
AAATAGGCTTCTGGCTGATGCCAAGATTGATGCAGAGGAGCTTTGGTCAACTCGTTCTCC
AAGTGGATGGCGTCCTTCCTCTCTCCCTGGTCCTGATTGGAAATCATCATCACCTGTGAA
AAGACGGTTATCTTCTCGTACGCTGCAATGGAGGTCTTAATCAACAACGTAGCGCAATAT
GCAAATGCTGTTCTTGCAGCAAAGGATAAATGAACGCAATACTTGTGTTGCCAGAGCTTG
ATGCTAACTCGTTTTGGCATGACAAAAAGT
■■Homology search results ■■ -
sp_hit_id Q8W486
Definition sp|Q8W486|Y1491_ARATH DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana
Align length 47
Score (bit) 72.0
E-value 7.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960476|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_I11, 5'
         (570 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8W486|Y1491_ARATH DUF246 domain-containing protein At1g04910...    72   7e-22
sp|P43779|TFOX_HAEIN DNA transformation protein tfoX OS=Haemophi...    32   2.2  
sp|P21826|MASZ_YEAST Malate synthase 2, glyoxysomal OS=Saccharom...    31   4.9  
sp|Q4L8V3|LYTS_STAHJ Sensor protein lytS OS=Staphylococcus haemo...    30   8.5  

>sp|Q8W486|Y1491_ARATH DUF246 domain-containing protein At1g04910
           OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1
          Length = 519

 Score = 72.0 bits (175), Expect(2) = 7e-22
 Identities = 35/47 (74%), Positives = 38/47 (80%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHD 563
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELDANSFWHD
Sbjct: 89  NGYLRVRCNGGLNQQRSAICNAVLAAR-IMNATLVLPELDANSFWHD 134



 Score = 50.8 bits (120), Expect(2) = 7e-22
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +2

Query: 239 LFVSIAVLLLCTFSLM--SRIRENRL-LADAKIDAEELWSTRSPSGWRPSSLPGPDW 400
           L + + VLL+CT SL+  + I  NR     +KI+ EELW +    GWRPSS P  DW
Sbjct: 25  LSIGVIVLLICTLSLLFSANIGSNREPTRPSKINVEELWESAKSGGWRPSSAPRSDW 81


>sp|P43779|TFOX_HAEIN DNA transformation protein tfoX OS=Haemophilus
           influenzae GN=tfoX PE=4 SV=1
          Length = 217

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -1

Query: 543 HQALATQVLRSFILCCKNSICILRYVVD*DLHCSVREDNRL 421
           + AL+ Q+LRS  LC K  I  ++ +++  L C++R+ NRL
Sbjct: 83  YYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRL 123


>sp|P21826|MASZ_YEAST Malate synthase 2, glyoxysomal
           OS=Saccharomyces cerevisiae GN=MSL2 PE=1 SV=1
          Length = 554

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 566 FVMPK---RVSIKLWQHKYCVHLSFAARTAFAYCATLLIKTSIAAYEKITVFSQV 411
           F +PK    + +KLW   +CV   F         AT+LI+T  AA++   +  Q+
Sbjct: 222 FYLPKMEHHMEVKLWNDIFCVAQDFIGMPRGTIRATVLIETLPAAFQMEEIIYQI 276


>sp|Q4L8V3|LYTS_STAHJ Sensor protein lytS OS=Staphylococcus
           haemolyticus (strain JCSC1435) GN=lytS PE=3 SV=1
          Length = 584

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 196 IQAAHNNDEIVCGGPFCIYSSAIVVHLL 279
           ++ AH+ +EI C  P C  +SAIV+ L+
Sbjct: 298 LKEAHSKEEIGCNNPNCSLTSAIVIPLM 325
tr_hit_id A7QN58
Definition tr|A7QN58|A7QN58_VITVI Chromosome undetermined scaffold_130, whole genome shotgun sequence OS=Vitis vinifera
Align length 47
Score (bit) 70.9
E-value 7.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960476|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_I11, 5'
         (570 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QN58|A7QN58_VITVI Chromosome undetermined scaffold_130, who...    71   7e-21
tr|A7QHM2|A7QHM2_VITVI Chromosome chr5 scaffold_98, whole genome...    71   7e-17
tr|B6TX13|B6TX13_MAIZE Growth regulator like protein OS=Zea mays...    71   7e-16
tr|Q2R4A8|Q2R4A8_ORYSJ Os11g0481200 protein OS=Oryza sativa subs...    71   1e-14
tr|A3CB97|A3CB97_ORYSJ Putative uncharacterized protein OS=Oryza...    71   2e-14
tr|Q2R4A9|Q2R4A9_ORYSJ Plant protein family protein, expressed O...    71   2e-14
tr|B8BKH6|B8BKH6_ORYSI Putative uncharacterized protein OS=Oryza...    71   2e-14
tr|Q0INN2|Q0INN2_ORYSJ Os12g0425600 protein (Fragment) OS=Oryza ...    69   4e-14
tr|Q2QSK8|Q2QSK8_ORYSJ cDNA clone:001-127-A05, full insert seque...    69   4e-14
tr|B8BPC5|B8BPC5_ORYSI Putative uncharacterized protein OS=Oryza...    69   4e-14
tr|B6U0Q1|B6U0Q1_MAIZE Growth regulator like protein OS=Zea mays...    65   7e-13
tr|B8B2V2|B8B2V2_ORYSI Putative uncharacterized protein OS=Oryza...    57   1e-12
tr|A9SG41|A9SG41_PHYPA Predicted protein (Fragment) OS=Physcomit...    71   5e-11
tr|A3BC39|A3BC39_ORYSJ Putative uncharacterized protein OS=Oryza...    60   7e-11
tr|A3CGU1|A3CGU1_ORYSJ Putative uncharacterized protein OS=Oryza...    69   1e-10
tr|Q0DBZ9|Q0DBZ9_ORYSJ Os06g0502800 protein OS=Oryza sativa subs...    60   1e-07
tr|Q9LFV2|Q9LFV2_ARATH Putative uncharacterized protein F14F8_12...    59   2e-07
tr|Q93ZR8|Q93ZR8_ARATH Putative auxin-independent growth promote...    59   2e-07
tr|Q4V398|Q4V398_ARATH At5g15740 (Putative uncharacterized prote...    59   2e-07
tr|Q1KUQ2|Q1KUQ2_9ROSI Putative uncharacterized protein OS=Cleom...    59   2e-07
tr|Q1KUZ2|Q1KUZ2_9ROSI Putative uncharacterized protein OS=Cleom...    58   4e-07
tr|Q10M06|Q10M06_ORYSJ Os03g0328100 protein OS=Oryza sativa subs...    57   7e-07
tr|A9S460|A9S460_PHYPA Predicted protein (Fragment) OS=Physcomit...    53   9e-07
tr|Q5VNG4|Q5VNG4_ORYSJ Os06g0284200 protein OS=Oryza sativa subs...    57   9e-07
tr|A9TCI7|A9TCI7_PHYPA Predicted protein OS=Physcomitrella paten...    57   9e-07
tr|A3BAQ4|A3BAQ4_ORYSJ Putative uncharacterized protein OS=Oryza...    57   9e-07
tr|A2YBS8|A2YBS8_ORYSI Putative uncharacterized protein OS=Oryza...    57   9e-07
tr|Q6Z341|Q6Z341_ORYSJ Os02g0726500 protein OS=Oryza sativa subs...    56   1e-06
tr|B8AHQ5|B8AHQ5_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|A7PGG5|A7PGG5_VITVI Chromosome chr17 scaffold_16, whole genom...    56   1e-06

>tr|A7QN58|A7QN58_VITVI Chromosome undetermined scaffold_130, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00002377001 PE=4 SV=1
          Length = 570

 Score = 70.9 bits (172), Expect(2) = 7e-21
 Identities = 34/47 (72%), Positives = 38/47 (80%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHD 563
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELDAN+FWHD
Sbjct: 142 NGYLRVRCNGGLNQQRSAICNAVLAAR-IMNATLVLPELDANAFWHD 187



 Score = 52.8 bits (125), Expect(2) = 7e-21
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = +2

Query: 194 PFKQLTTMMRSFAGGLFVSIAVLLLCTFSLMSRIRENRLLADAKIDAEELWSTRSPSGWR 373
           P KQL+  ++ F G L VS+ +LL+C+   +S    +      +++ ++LW T +   WR
Sbjct: 66  PLKQLSWGVKGFIGRLSVSLIILLICSVFFLSFGPNSSNSRVEQVNVDDLWGTAASGDWR 125

Query: 374 PSSLPGPDW 400
           PSS P  DW
Sbjct: 126 PSSAPRSDW 134


>tr|A7QHM2|A7QHM2_VITVI Chromosome chr5 scaffold_98, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038841001
           PE=4 SV=1
          Length = 470

 Score = 70.9 bits (172), Expect(2) = 7e-17
 Identities = 34/47 (72%), Positives = 38/47 (80%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHD 563
           +GYL VRCNGGLNQQR+AIC     ++  MNA LVLPELDANSFWHD
Sbjct: 37  NGYLRVRCNGGLNQQRTAICNAVLAAR-IMNATLVLPELDANSFWHD 82



 Score = 39.3 bits (90), Expect(2) = 7e-17
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 KIDAEELWSTRSPSGWRPSSLPGPDWKS 406
           +ID E LW     SGWRPSS P  DW S
Sbjct: 4   QIDLEALWGPADSSGWRPSSAPRSDWPS 31


>tr|B6TX13|B6TX13_MAIZE Growth regulator like protein OS=Zea mays
           PE=2 SV=1
          Length = 519

 Score = 70.9 bits (172), Expect(2) = 7e-16
 Identities = 34/48 (70%), Positives = 38/48 (79%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFWHD+
Sbjct: 86  NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWHDE 132



 Score = 35.8 bits (81), Expect(2) = 7e-16
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 239 LFVSIAVLLLCTFSLMSRIRENRLLADAKI---DAEELWSTRSPSGWRPSSLPGPDW 400
           L+V++A L++ T  L S      L A  ++   D  +LW T   +GWR SS P   W
Sbjct: 20  LWVAVAALVVGTVCLFSSSSVGLLGASYRVQDVDVNKLWRTADSNGWRASSAPRTYW 76


>tr|Q2R4A8|Q2R4A8_ORYSJ Os11g0481200 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0481200 PE=2 SV=2
          Length = 525

 Score = 70.9 bits (172), Expect(2) = 1e-14
 Identities = 34/48 (70%), Positives = 38/48 (79%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFWHD+
Sbjct: 88  NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWHDE 134



 Score = 32.0 bits (71), Expect(2) = 1e-14
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 326 IDAEELWSTRSPSGWRPSSLPGPDWKSS 409
           +D  +LW T   +GWR SS P   W  S
Sbjct: 58  VDVNKLWRTADSNGWRASSAPRTYWPQS 85


>tr|A3CB97|A3CB97_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032569 PE=4 SV=1
          Length = 546

 Score = 70.9 bits (172), Expect(2) = 2e-14
 Identities = 34/48 (70%), Positives = 38/48 (79%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFWHD+
Sbjct: 109 NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWHDE 155



 Score = 30.8 bits (68), Expect(2) = 2e-14
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 326 IDAEELWSTRSPSGWRPSSLPGPDW 400
           +D  +LW T   +GWR SS P   W
Sbjct: 75  VDVNKLWRTADSNGWRASSAPRTYW 99


>tr|Q2R4A9|Q2R4A9_ORYSJ Plant protein family protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os11g29120 PE=4
           SV=2
          Length = 529

 Score = 70.9 bits (172), Expect(2) = 2e-14
 Identities = 34/48 (70%), Positives = 38/48 (79%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFWHD+
Sbjct: 92  NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWHDE 138



 Score = 30.8 bits (68), Expect(2) = 2e-14
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 326 IDAEELWSTRSPSGWRPSSLPGPDW 400
           +D  +LW T   +GWR SS P   W
Sbjct: 58  VDVNKLWRTADSNGWRASSAPRTYW 82


>tr|B8BKH6|B8BKH6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36102 PE=4 SV=1
          Length = 529

 Score = 70.9 bits (172), Expect(2) = 2e-14
 Identities = 34/48 (70%), Positives = 38/48 (79%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFWHD+
Sbjct: 92  NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWHDE 138



 Score = 30.8 bits (68), Expect(2) = 2e-14
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 326 IDAEELWSTRSPSGWRPSSLPGPDW 400
           +D  +LW T   +GWR SS P   W
Sbjct: 58  VDVNKLWRTADSNGWRASSAPRTYW 82


>tr|Q0INN2|Q0INN2_ORYSJ Os12g0425600 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os12g0425600 PE=4 SV=1
          Length = 567

 Score = 69.3 bits (168), Expect(2) = 4e-14
 Identities = 34/48 (70%), Positives = 37/48 (77%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFW DK
Sbjct: 132 NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWRDK 178



 Score = 31.6 bits (70), Expect(2) = 4e-14
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 326 IDAEELWSTRSPSGWRPSSLPGPDW 400
           +D  +LW+T   +GWR SS P   W
Sbjct: 100 VDVNKLWTTAGSNGWRASSAPRSYW 124


>tr|Q2QSK8|Q2QSK8_ORYSJ cDNA clone:001-127-A05, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g23760 PE=2
           SV=2
          Length = 502

 Score = 69.3 bits (168), Expect(2) = 4e-14
 Identities = 34/48 (70%), Positives = 37/48 (77%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFW DK
Sbjct: 67  NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWRDK 113



 Score = 31.6 bits (70), Expect(2) = 4e-14
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 326 IDAEELWSTRSPSGWRPSSLPGPDW 400
           +D  +LW+T   +GWR SS P   W
Sbjct: 35  VDVNKLWTTAGSNGWRASSAPRSYW 59


>tr|B8BPC5|B8BPC5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38140 PE=4 SV=1
          Length = 502

 Score = 69.3 bits (168), Expect(2) = 4e-14
 Identities = 34/48 (70%), Positives = 37/48 (77%)
 Frame = +3

Query: 423 DGYLLVRCNGGLNQQRSAICKCCSCSKG*MNAILVLPELDANSFWHDK 566
           +GYL VRCNGGLNQQRSAIC     ++  MNA LVLPELD NSFW DK
Sbjct: 67  NGYLRVRCNGGLNQQRSAICNAVVAAR-IMNATLVLPELDTNSFWRDK 113



 Score = 31.6 bits (70), Expect(2) = 4e-14
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 326 IDAEELWSTRSPSGWRPSSLPGPDW 400
           +D  +LW+T   +GWR SS P   W
Sbjct: 35  VDVNKLWTTAGSNGWRASSAPRSYW 59