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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960478
Clone id TST39A01NGRL0007_I13
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_I13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATTCTCTCTCTTTCCACTCGCATTGAGCTCTGCGCAGACAAGGAGGAGAAAGGTTTGTTG
GGTTTTGCTGTGGGGGCACAGACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGCGCCTATGAGGACGCTCATAGAGCTATGTAGACAACCCAAAATCTGG
CCATGCTTTGTGCTGCTCTTCTTCTTCCTGGCGGTGAATTGCAGCCCGCGCTCGGTGCAT
GCCGGCTGCCTTGCCGGAAATGCAGGATTGGATTGGGCAGCTGTGAGGCCGGGTGGGCGC
ACTTTACTGCAGACCAATGTCTCTACCAATTACTTGGTGCTGGCCCAGGATCGCACGGAA
CGCAGAGACCCTCTCAATAACTTTGAAATTTATCGTGATGGTTGGGACGTCAAAAACAAG
CACTATTGGGGCTCGGCTGGTTTTACTGGTGCTGTCGGTTTTGTGCTGGCGGCAGCATGG
CTGGCTTTTGGATTGGTGCTTCTACTGCTCCTCTGCTGCTGCTGGTTGCTGTTGCCATGG
CTGGGTTAAAAAGGTTCTCATAAAGGCG
■■Homology search results ■■ -
sp_hit_id Q9D1H0
Definition sp|Q9D1H0|CL052_MOUSE Uncharacterized protein C12orf52 homolog OS=Mus musculus
Align length 33
Score (bit) 31.6
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960478|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_I13, 5'
         (549 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D1H0|CL052_MOUSE Uncharacterized protein C12orf52 homolog O...    32   2.7  
sp|Q28658|SPRR3_RABIT Small proline-rich protein 3 OS=Oryctolagu...    31   3.5  
sp|Q5U651|RAIN_HUMAN Ras-interacting protein 1 OS=Homo sapiens G...    31   4.6  
sp|Q86I32|Y7617_DICDI Uncharacterized protein DDB_G0275275 OS=Di...    30   6.0  
sp|A5DKH0|MYO1_PICGU Myosin-1 OS=Pichia guilliermondii GN=MYO1 P...    30   6.0  
sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing prot...    30   7.7  
sp|Q21RR4|ACEK_RHOFD Isocitrate dehydrogenase kinase/phosphatase...    30   7.7  
sp|A2SIX7|DAPA_METPP Dihydrodipicolinate synthase OS=Methylibium...    25   9.6  

>sp|Q9D1H0|CL052_MOUSE Uncharacterized protein C12orf52 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 253

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 354 EGLCVPCDPGPAPSNW*RHWSAVKCAHPASQLP 256
           +GLCVPC  G   S+   H +     HPAS  P
Sbjct: 170 DGLCVPCSLGQRRSHSLTHLTVPSTGHPASSAP 202


>sp|Q28658|SPRR3_RABIT Small proline-rich protein 3 OS=Oryctolagus
           cuniculus GN=SPRR3 PE=2 SV=1
          Length = 231

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
 Frame = -1

Query: 471 QKPAMLPPAQNRQHQ*NQPSPNSACF*RPNHHDKFQSY*EGLCVPCDPGPAPSNW*RHWS 292
           QK    PP Q +QHQ  QP        +P   D F    +  C P  P P  +N      
Sbjct: 6   QKQPFTPPPQPQQHQVKQPC-------QPPPQDTFVPITKDPCHPNVPSPGNTNI-AEQG 57

Query: 291 AVKCAHPASQLPNPILHFRQ----GSRHAPSAGCNSPPG 187
            VK     S +  P   + +    G+   P +GC S PG
Sbjct: 58  YVKIPEQGS-IKVPDTGYTKIPDSGNTKVPESGCTSVPG 95


>sp|Q5U651|RAIN_HUMAN Ras-interacting protein 1 OS=Homo sapiens
           GN=RASIP1 PE=1 SV=1
          Length = 963

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 297 WSAVKCAHPA---SQLPNPILHFRQGSRHAPSAGCNSPPGRRRAAQS 166
           WS+++  HP    +QL + + H++ G    P A  + PP  R A  +
Sbjct: 851 WSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAWDPPPAEREAVDT 897


>sp|Q86I32|Y7617_DICDI Uncharacterized protein DDB_G0275275
           OS=Dictyostelium discoideum GN=DDB_G0275275 PE=4 SV=1
          Length = 542

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
 Frame = -1

Query: 528 NPAMATATSSSRGA------VEAPIQKPAMLPPAQNRQHQ*NQPSPNSACF*RPNHHDKF 367
           N  +A + SSS G          PIQ P+  P  + R  +   PSP        NHH   
Sbjct: 121 NSNIANSNSSSTGRDSTPTPTPTPIQTPSSTPSKKKRSWRIRTPSPKPKLESNNNHHHNH 180

Query: 366 QSY 358
            +Y
Sbjct: 181 HNY 183


>sp|A5DKH0|MYO1_PICGU Myosin-1 OS=Pichia guilliermondii GN=MYO1 PE=3
            SV=3
          Length = 1275

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 39/146 (26%), Positives = 54/146 (36%), Gaps = 28/146 (19%)
 Frame = -1

Query: 528  NPAMATATSS--------SRGAVEAPI-----------QKPAMLPPAQNRQHQ*NQPSPN 406
            NP    ATSS        +RG   AP            Q+  + PP+   Q Q + P+P 
Sbjct: 981  NPKRPRATSSKVDYSKYYNRGGRLAPARTVPPAHPTSQQRTPVAPPSHATQQQPSYPTPV 1040

Query: 405  SACF*RPNHHDKFQSY*EGLCVPCDPGPAPSNW*RHWSAVKCA-----HPASQLPNPILH 241
            +    +PN+H           V   P PAPS    H  AV  A     H   Q P  ++ 
Sbjct: 1041 APVHQQPNNH-----------VRKVPPPAPSLNNNHQEAVTAATAAMNHVNIQQPATVVQ 1089

Query: 240  FRQGSRHAPS----AGCNSPPGRRRA 175
                +  APS        +PP ++ A
Sbjct: 1090 NHNSNPTAPSRPAKKAAPAPPVKKTA 1115


>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1
            OS=Homo sapiens GN=BAHCC1 PE=1 SV=3
          Length = 2608

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 274  PGLTAAQSNPAFPARQPACTERGLQFTARKKKSSTKHGQIL 152
            PG T ++     P+R  AC E G Q  + + K +T+ G +L
Sbjct: 1736 PGATPSRDALFNPSRAFACREEGSQLASERLKRATRKGTVL 1776


>sp|Q21RR4|ACEK_RHOFD Isocitrate dehydrogenase kinase/phosphatase
           OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
           BAA-621 / T118) GN=aceK PE=3 SV=1
          Length = 615

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 17/65 (26%)
 Frame = -2

Query: 446 HKTDSTSKTSRAP-----IVLVFDVPTITINFKVI------------ERVSAFRAILGQH 318
           H+  ST K   AP     ++LVFD+P+    FKVI            E++ A   ++ QH
Sbjct: 314 HQRHSTDKFRIAPGIKGMVMLVFDLPSFPYVFKVIKDFYPPPKDTTREQIKAKYLLVKQH 373

Query: 317 QVIGR 303
             +GR
Sbjct: 374 DRVGR 378


>sp|A2SIX7|DAPA_METPP Dihydrodipicolinate synthase OS=Methylibium
           petroleiphilum (strain PM1) GN=dapA PE=3 SV=1
          Length = 293

 Score = 25.0 bits (53), Expect(2) = 9.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 283 LYCRPMSLPITWCWPRIARNAETLSITL 366
           L+C P  +P+ W   R+ R    L + L
Sbjct: 245 LFCEPNPIPVKWALQRMGRCGGALRLPL 272



 Score = 22.3 bits (46), Expect(2) = 9.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 189 LAVNCSPRSVHAGCLAGNAG 248
           +  N +PR++H  C+A  AG
Sbjct: 207 VTANVAPRAMHELCVAAMAG 226
tr_hit_id Q6H887
Definition tr|Q6H887|Q6H887_ORYSJ Os02g0183500 protein OS=Oryza sativa subsp. japonica
Align length 89
Score (bit) 61.2
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960478|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_I13, 5'
         (549 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6H887|Q6H887_ORYSJ Os02g0183500 protein OS=Oryza sativa subs...    61   3e-08
tr|B8AIX7|B8AIX7_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A3A3V0|A3A3V0_ORYSJ Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A5BVV4|A5BVV4_VITVI Putative uncharacterized protein OS=Vitis...    58   4e-07
tr|A9S9C1|A9S9C1_PHYPA Predicted protein OS=Physcomitrella paten...    57   6e-07
tr|A9NWY8|A9NWY8_PICSI Putative uncharacterized protein OS=Picea...    56   1e-06
tr|Q69QY7|Q69QY7_ORYSJ Os02g0799300 protein OS=Oryza sativa subs...    55   2e-06
tr|A3ACC3|A3ACC3_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A2XAM7|A2XAM7_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A7P3I2|A7P3I2_VITVI Chromosome chr1 scaffold_5, whole genome ...    54   4e-06
tr|Q9C997|Q9C997_ARATH Putative uncharacterized protein F23N20.1...    54   5e-06
tr|Q8GWG3|Q8GWG3_ARATH Putative uncharacterized protein At2g2527...    54   5e-06
tr|Q0WWV6|Q0WWV6_ARATH Putative uncharacterized protein At1g7111...    54   5e-06
tr|A9RMS1|A9RMS1_PHYPA Predicted protein OS=Physcomitrella paten...    54   7e-06
tr|B8A2B2|B8A2B2_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06
tr|B6UF00|B6UF00_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06
tr|Q9SIR6|Q9SIR6_ARATH Putative uncharacterized protein At2g2527...    53   1e-05
tr|Q1PF01|Q1PF01_ARATH Putative uncharacterized protein OS=Arabi...    53   1e-05
tr|A9RV11|A9RV11_PHYPA Predicted protein (Fragment) OS=Physcomit...    53   1e-05
tr|A0MEQ0|A0MEQ0_ARATH Putative uncharacterized protein (Fragmen...    53   1e-05
tr|Q8H0U2|Q8H0U2_ARATH Putative uncharacterized protein At2g1240...    52   2e-05
tr|A7QS34|A7QS34_VITVI Chromosome undetermined scaffold_155, who...    51   3e-05
tr|A5CBE9|A5CBE9_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|Q5ZEM2|Q5ZEM2_ORYSJ Putative uncharacterized protein P0684C01...    51   5e-05
tr|B8ACZ7|B8ACZ7_ORYSI Putative uncharacterized protein OS=Oryza...    51   5e-05
tr|A7Q8Y8|A7Q8Y8_VITVI Chromosome chr9 scaffold_65, whole genome...    51   5e-05
tr|A2ZNP6|A2ZNP6_ORYSJ Putative uncharacterized protein OS=Oryza...    51   5e-05
tr|Q9M8M2|Q9M8M2_ARATH Putative uncharacterized protein T21F11.1...    50   8e-05
tr|Q7XTN2|Q7XTN2_ORYSJ Os04g0644000 protein OS=Oryza sativa subs...    50   1e-04
tr|Q25A63|Q25A63_ORYSA H0306F03.12 protein OS=Oryza sativa GN=H0...    50   1e-04

>tr|Q6H887|Q6H887_ORYSJ Os02g0183500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1572_F02.5 PE=4 SV=1
          Length = 565

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 34/89 (38%), Positives = 48/89 (53%)
 Frame = +3

Query: 162 PCFVLLFFFLAVNCSPRSVHAGCLAGNAGLDWAAVRPGGRTLLQTNVSTNYLVLAQDRTE 341
           P  +LL   L++      V    L   A  D +AV  GGR+    + ST   VLA +RT 
Sbjct: 6   PPLLLLLIVLSL------VVLAALLAAAAADASAVAGGGRS----SPSTTTFVLAGERTR 55

Query: 342 RRDPLNNFEIYRDGWDVKNKHYWGSAGFT 428
           R+DPL+   +Y  GW++ ++HYW S GFT
Sbjct: 56  RKDPLDGLRLYSGGWNISDEHYWASVGFT 84


>tr|B8AIX7|B8AIX7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06121 PE=4 SV=1
          Length = 485

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 34/89 (38%), Positives = 48/89 (53%)
 Frame = +3

Query: 162 PCFVLLFFFLAVNCSPRSVHAGCLAGNAGLDWAAVRPGGRTLLQTNVSTNYLVLAQDRTE 341
           P  +LL   L++      V    L   A  D +AV  GGR+    + ST   VLA +RT 
Sbjct: 6   PPLLLLLIVLSL------VVLAALLAAAAADASAVAGGGRS----SPSTTTFVLAGERTR 55

Query: 342 RRDPLNNFEIYRDGWDVKNKHYWGSAGFT 428
           R+DPL+   +Y  GW++ ++HYW S GFT
Sbjct: 56  RKDPLDGLRLYSGGWNISDEHYWASVGFT 84


>tr|A3A3V0|A3A3V0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005472 PE=4 SV=1
          Length = 447

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 34/89 (38%), Positives = 48/89 (53%)
 Frame = +3

Query: 162 PCFVLLFFFLAVNCSPRSVHAGCLAGNAGLDWAAVRPGGRTLLQTNVSTNYLVLAQDRTE 341
           P  +LL   L++      V    L   A  D +AV  GGR+    + ST   VLA +RT 
Sbjct: 6   PPLLLLLIVLSL------VVLAALLAAAAADASAVAGGGRS----SPSTTTFVLAGERTR 55

Query: 342 RRDPLNNFEIYRDGWDVKNKHYWGSAGFT 428
           R+DPL+   +Y  GW++ ++HYW S GFT
Sbjct: 56  RKDPLDGLRLYSGGWNISDEHYWASVGFT 84


>tr|A5BVV4|A5BVV4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030562 PE=4 SV=1
          Length = 473

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +3

Query: 315 LVLAQDRTERRDPLNNFEIYRDGWDVKNKHYWGSAGFT 428
           LVL  +RT+R+DPL++F+ Y  GW++ NKHYW S GFT
Sbjct: 34  LVLVAERTKRKDPLSHFKQYTGGWNISNKHYWASVGFT 71


>tr|A9S9C1|A9S9C1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163589 PE=4 SV=1
          Length = 673

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = +3

Query: 234 AGNAGLDWAAVRPGGRTLLQTNVSTNYLVLAQDRTERRDPLNNFEIYRDGWDVKNKHYWG 413
           +G++G +W  VR  GR+LL TN ST        R +R +P ++F  YR G+D+K+K+YWG
Sbjct: 206 SGDSGSEWKFVR--GRSLLATNTSTEKFRPLAPRDDRLNPFDSFNHYRAGYDIKSKNYWG 263

Query: 414 S 416
           S
Sbjct: 264 S 264


>tr|A9NWY8|A9NWY8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 539

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
 Frame = +3

Query: 165 CFVLLFFFLAVNCSPRSVHAGCLAGNAGLDWAAVRPGGRTLLQTN-----VSTNYLVLAQ 329
           C    F    + CS         A  A L      PGG   L+ +        + LVLA 
Sbjct: 10  CIASAFLLSLLLCSMHPT-----AALAALSSEEAVPGGIVHLEASPPAPLAENSSLVLAA 64

Query: 330 DRTERRDPLNNFEIYRDGWDVKNKHYWGSAGFT 428
            RT R DPL+NF+ Y  GW++ N+HYW S G T
Sbjct: 65  RRTHRHDPLDNFKRYGGGWNISNEHYWASVGLT 97


>tr|Q69QY7|Q69QY7_ORYSJ Os02g0799300 protein OS=Oryza sativa subsp.
           japonica GN=OJ1695_D07.22 PE=2 SV=1
          Length = 546

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 204 SPRSVHAGCLAGNAGLDWAAVRPGGRTLLQTNVSTNY-LVLAQDRTERRDPLNNFEIYRD 380
           +PR  H   +    G  + A R      +  NV+TN   VLAQ+RT R+DPLN F  Y  
Sbjct: 31  APREFHKALVPDRYG--FVARRSIAEAPVDVNVTTNSSFVLAQERTYRKDPLNGFRKYTG 88

Query: 381 GWDVKNKHYWGSAGFT 428
           GW++   HY  S G+T
Sbjct: 89  GWNISEVHYMASVGYT 104


>tr|A3ACC3|A3ACC3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008445 PE=4 SV=1
          Length = 546

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 204 SPRSVHAGCLAGNAGLDWAAVRPGGRTLLQTNVSTNY-LVLAQDRTERRDPLNNFEIYRD 380
           +PR  H   +    G  + A R      +  NV+TN   VLAQ+RT R+DPLN F  Y  
Sbjct: 31  APREFHKALVPDRYG--FVARRSIAEAPVDVNVTTNSSFVLAQERTYRKDPLNGFRKYTG 88

Query: 381 GWDVKNKHYWGSAGFT 428
           GW++   HY  S G+T
Sbjct: 89  GWNISEVHYMASVGYT 104


>tr|A2XAM7|A2XAM7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09307 PE=4 SV=1
          Length = 546

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +3

Query: 204 SPRSVHAGCLAGNAGLDWAAVRPGGRTLLQTNVSTNY-LVLAQDRTERRDPLNNFEIYRD 380
           +PR  H   +    G  + A R      +  NV+TN   VLAQ+RT R+DPLN F  Y  
Sbjct: 31  APREFHKALVPDRYG--FVARRSIAEAPVDVNVTTNSSFVLAQERTYRKDPLNGFRKYTG 88

Query: 381 GWDVKNKHYWGSAGFT 428
           GW++   HY  S G+T
Sbjct: 89  GWNISEVHYMASVGYT 104


>tr|A7P3I2|A7P3I2_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030452001
           PE=4 SV=1
          Length = 658

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 26/38 (68%)
 Frame = +3

Query: 315 LVLAQDRTERRDPLNNFEIYRDGWDVKNKHYWGSAGFT 428
           LVLA  RT R D L  F+ YR GWD+ N+HYW S GFT
Sbjct: 188 LVLAAKRTNRPDILRGFKRYRGGWDITNRHYWASVGFT 225