DK960499 |
Clone id |
TST39A01NGRL0007_J10 |
Library |
TST39 |
Length |
651 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_J10. 5' end sequence. |
Accession |
DK960499 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CCTGCTTCAAGAATAAAGTGCTCTCATGGCGTTCTCGAGTCGAGAAGGACATTGACGAAG TGTTGCAATCTCATACAGTTTACACGAATGTATCTAAAGGTGTTCTAGCCAAATCGAAAG ATCTGATTGCTGCCTTTGGCACTGATGACCAAGAAAAGATCTGCCTAGAGATCTTAGAGA AAGGAGAGCTTCAAGTTTCGGGAATGGAGAGGGAAGTACACCTTTCAAGTCAATTTAGAG ACATTGCAACAATCGTCATGCAGAAAACAGTGAACCCACAAACACAACGACCTTATACAA TCAGCATGATTGAGCGTTTAATGCGAGAAGTGCATTTTGCACTGGAGCCAAACAAGAGCT CAAAAAAGCAGGCTCTGGAGCTTATTAAAGAGCTTGAAAAGCAATTCCCCATCGTGAGAG CCAAAATGAGACTTCACCTTCTTGTACCAAATGATCAAGGTCCAAAGTTAACTCAGAAGT TAGAAGAGTGGAACTCCTTGATCGAGCAAAGTGACGATCCAAAAAACATGTTTAAAAGTT GTAAGTGGTCATTTCATTTTATATAATATTTGCATACACTTACTGTTTTTCTATGCCATG TCTACACACACATAANAGCCGGGCTTGAGAAAACTTTTCTAAGCTGTTCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RK30 |
Definition |
sp|Q5RK30|SBDS_RAT Ribosome maturation protein SBDS OS=Rattus norvegicus |
Align length |
171 |
Score (bit) |
209.0 |
E-value |
1.0e-53 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TMR5 |
Definition |
tr|A9TMR5|A9TMR5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
172 |
Score (bit) |
252.0 |
E-value |
2.0e-65 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960499|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_J10, 5' (651 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TMR5|A9TMR5_PHYPA Predicted protein OS=Physcomitrella paten... 252 2e-65 tr|Q9MAR2|Q9MAR2_ARATH F28H19.11 protein (At1g43860) (Putative u... 251 4e-65 tr|Q8LDC0|Q8LDC0_ARATH Putative uncharacterized protein OS=Arabi... 251 4e-65 tr|A9NNC3|A9NNC3_PICSI Putative uncharacterized protein OS=Picea... 247 4e-64 tr|B4G198|B4G198_MAIZE Putative uncharacterized protein OS=Zea m... 241 2e-62 tr|Q6ZD69|Q6ZD69_ORYSJ Os08g0107500 protein OS=Oryza sativa subs... 241 3e-62 tr|B8BA40|B8BA40_ORYSI Putative uncharacterized protein OS=Oryza... 241 3e-62 tr|A7NSL8|A7NSL8_VITVI Chromosome chr18 scaffold_1, whole genome... 239 8e-62 tr|A3BNW6|A3BNW6_ORYSJ Putative uncharacterized protein OS=Oryza... 209 2e-52 tr|A5BZ27|A5BZ27_VITVI Putative uncharacterized protein OS=Vitis... 207 4e-52 tr|A8K0P4|A8K0P4_HUMAN cDNA FLJ78101, highly similar to Homo sap... 205 2e-51 tr|B7PKR4|B7PKR4_IXOSC Ribosome maturation protein SBDS, putativ... 202 1e-50 tr|Q6B8B8|Q6B8B8_9ACAR Shwachman-Bodian-Diamond syndrome-like pr... 202 2e-50 tr|A7RWI6|A7RWI6_NEMVE Predicted protein OS=Nematostella vectens... 201 2e-50 tr|Q7ZW65|Q7ZW65_DANRE Shwachman-Bodian-Diamond syndrome OS=Dani... 198 2e-49 tr|B5XEK1|B5XEK1_SALSA Ribosome maturation protein SBDS OS=Salmo... 196 1e-48 tr|Q4RFU2|Q4RFU2_TETNG Chromosome 16 SCAF15113, whole genome sho... 195 2e-48 tr|B5XAR7|B5XAR7_SALSA Ribosome maturation protein SBDS OS=Salmo... 193 7e-48 tr|B6M480|B6M480_BRAFL Putative uncharacterized protein OS=Branc... 188 2e-46 tr|A8HPN6|A8HPN6_CHLRE Predicted protein (Fragment) OS=Chlamydom... 188 3e-46 tr|Q175L0|Q175L0_AEDAE Putative uncharacterized protein OS=Aedes... 185 2e-45 tr|A9V7B2|A9V7B2_MONBE Predicted protein OS=Monosiga brevicollis... 180 8e-44 tr|Q7Q3H9|Q7Q3H9_ANOGA AGAP007882-PA OS=Anopheles gambiae GN=AGA... 179 1e-43 tr|B3S4K1|B3S4K1_TRIAD Putative uncharacterized protein OS=Trich... 179 2e-43 tr|B0W4Z3|B0W4Z3_CULQU Shwachman-Bodian-Diamond syndrome protein... 177 6e-43 tr|Q3HWU0|Q3HWU0_PROWI Shwachman-Bodian-Diamond protein-like pro... 176 1e-42 tr|A8XLK4|A8XLK4_CAEBR Putative uncharacterized protein OS=Caeno... 172 2e-41 tr|A8Q6R0|A8Q6R0_BRUMA Putative uncharacterized protein OS=Brugi... 166 1e-39 tr|A4RYM8|A4RYM8_OSTLU Predicted protein (Fragment) OS=Ostreococ... 164 3e-39 tr|Q4P379|Q4P379_USTMA Putative uncharacterized protein OS=Ustil... 162 2e-38
>tr|A9TMR5|A9TMR5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_196479 PE=4 SV=1 Length = 364
Score = 252 bits (643), Expect = 2e-65 Identities = 122/172 (70%), Positives = 149/172 (86%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEK 182 CFKNKVLSWRS VEKDIDEVLQ+HTV++NVSKGVLAKSKDLI FGTDD++K+CLEILEK Sbjct: 33 CFKNKVLSWRSHVEKDIDEVLQTHTVFSNVSKGVLAKSKDLIQVFGTDDEDKVCLEILEK 92
Query: 183 GELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSS 362 GELQV+ ERE LS+QFRDIATIVM KTVNP T+RPYTI+MIERLMREVHFA++P+++S Sbjct: 93 GELQVADRERESQLSNQFRDIATIVMAKTVNPDTERPYTITMIERLMREVHFAIDPHRNS 152
Query: 363 KKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 K+QALELI+EL+K++PI RA+M+L +VP +Q LT L WN+ IE ++ Sbjct: 153 KQQALELIRELQKKYPITRARMKLRFVVPINQIESLTTALSSWNAQIEGKEE 204
>tr|Q9MAR2|Q9MAR2_ARATH F28H19.11 protein (At1g43860) (Putative uncharacterized protein At1g43860; F28H19.11) OS=Arabidopsis thaliana GN=At1g43860/F28H19.11 PE=2 SV=1 Length = 370
Score = 251 bits (640), Expect = 4e-65 Identities = 120/172 (69%), Positives = 146/172 (84%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEK 182 C+KNKVLSWRS VEKDIDEVLQSHTVY+NVSKGVLAKSKDL+ +FG+DD KIC++ILEK Sbjct: 33 CYKNKVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLMKSFGSDDHTKICIDILEK 92
Query: 183 GELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSS 362 GELQV+G ERE SSQFRDIATIVMQKT+NP+TQRPYTISM+ERLM E+HFA++P+ +S Sbjct: 93 GELQVAGKERESQFSSQFRDIATIVMQKTINPETQRPYTISMVERLMHEIHFAVDPHSNS 152
Query: 363 KKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 KKQAL++I+EL+K FPI R+ MRL L VP P L +KL+EW+ + D+ Sbjct: 153 KKQALDVIRELQKHFPIKRSPMRLRLTVPVQNFPSLLEKLKEWDGSVVSKDE 204
>tr|Q8LDC0|Q8LDC0_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 370
Score = 251 bits (640), Expect = 4e-65 Identities = 120/172 (69%), Positives = 146/172 (84%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEK 182 C+KNKVLSWRS VEKDIDEVLQSHTVY+NVSKGVLAKSKDL+ +FG+DD KIC++ILEK Sbjct: 33 CYKNKVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLMKSFGSDDHTKICIDILEK 92
Query: 183 GELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSS 362 GELQV+G ERE SSQFRDIATIVMQKT+NP+TQRPYTISM+ERLM E+HFA++P+ +S Sbjct: 93 GELQVAGKERESQFSSQFRDIATIVMQKTINPETQRPYTISMVERLMHEIHFAVDPHSNS 152
Query: 363 KKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 KKQAL++I+EL+K FPI R+ MRL L VP P L +KL+EW+ + D+ Sbjct: 153 KKQALDVIRELQKHFPIKRSPMRLRLTVPVQNFPSLLEKLKEWDGSVVSKDE 204
>tr|A9NNC3|A9NNC3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 380
Score = 247 bits (631), Expect = 4e-64 Identities = 119/167 (71%), Positives = 142/167 (85%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEK 182 C+KNKVLSWRS VE D+DEVLQSHTVY+NVSKG+LAKSKDLI +FGTDDQEKIC E+L K Sbjct: 33 CYKNKVLSWRSGVETDLDEVLQSHTVYSNVSKGILAKSKDLIKSFGTDDQEKICSEVLNK 92
Query: 183 GELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSS 362 GELQ++G ERE LSSQFRDIATIVM+KT+NP+T RPYTI+MIERLM EVHFA++P+K S Sbjct: 93 GELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDPHKIS 152
Query: 363 KKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLI 503 K+QAL+LI+EL+K FPI R+ MRL L++P Q QKL+ WN I Sbjct: 153 KQQALDLIRELQKHFPIKRSPMRLRLIIPEIQEANFLQKLQTWNPCI 199
>tr|B4G198|B4G198_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 355
Score = 241 bits (616), Expect = 2e-62 Identities = 117/172 (68%), Positives = 142/172 (82%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEK 182 CF NKVLSWRSRVEKDIDEVLQSHTVY+NVSKG+LA SK+L AFGTDD +IC+EILEK Sbjct: 33 CFPNKVLSWRSRVEKDIDEVLQSHTVYSNVSKGILANSKELAKAFGTDDLTQICIEILEK 92
Query: 183 GELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSS 362 GELQVSG ERE LSSQFRDIATIVM+KT+NP+T+RPYTI+MIERLM E+HFA++PN +S Sbjct: 93 GELQVSGKEREAQLSSQFRDIATIVMEKTINPETRRPYTITMIERLMHEIHFAVDPNLTS 152
Query: 363 KKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 K+QAL++IK+L + FPI RA +R+ P P LT+K+ WN+ I D+ Sbjct: 153 KEQALKVIKKLTEHFPIKRAPLRVRFTAPKPNFPGLTEKIGGWNATIISKDE 204
>tr|Q6ZD69|Q6ZD69_ORYSJ Os08g0107500 protein OS=Oryza sativa subsp. japonica GN=P0450B04.21 PE=2 SV=1 Length = 357
Score = 241 bits (615), Expect = 3e-62 Identities = 117/172 (68%), Positives = 142/172 (82%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEK 182 CF NKVLSWR+RVEKDIDEVLQSHTVY+NVSKGVLAKSKDL+ AF TDD ICLEIL+K Sbjct: 33 CFPNKVLSWRTRVEKDIDEVLQSHTVYSNVSKGVLAKSKDLLKAFSTDDHTAICLEILDK 92
Query: 183 GELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSS 362 GELQVSG ERE LSSQF +IATIVM KT+NP+T+RPYTI+MIERLM +VHFA++PN +S Sbjct: 93 GELQVSGKEREAQLSSQFHEIATIVMDKTINPETRRPYTITMIERLMHDVHFAVDPNLTS 152
Query: 363 KKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 K+QAL++IK+L + FPI RA +R+ P + LT+KLEEWN+ + D+ Sbjct: 153 KEQALKVIKKLTEHFPIKRAPLRVRFTAPKSKFASLTEKLEEWNANVISKDE 204
>tr|B8BA40|B8BA40_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27530 PE=4 SV=1 Length = 357
Score = 241 bits (615), Expect = 3e-62 Identities = 117/172 (68%), Positives = 142/172 (82%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEK 182 CF NKVLSWR+RVEKDIDEVLQSHTVY+NVSKGVLAKSKDL+ AF TDD ICLEIL+K Sbjct: 33 CFPNKVLSWRTRVEKDIDEVLQSHTVYSNVSKGVLAKSKDLLKAFSTDDHTAICLEILDK 92
Query: 183 GELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSS 362 GELQVSG ERE LSSQF +IATIVM KT+NP+T+RPYTI+MIERLM +VHFA++PN +S Sbjct: 93 GELQVSGKEREAQLSSQFHEIATIVMDKTINPETRRPYTITMIERLMHDVHFAVDPNLTS 152
Query: 363 KKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 K+QAL++IK+L + FPI RA +R+ P + LT+KLEEWN+ + D+ Sbjct: 153 KEQALKVIKKLTEHFPIKRAPLRVRFTAPKSKFASLTEKLEEWNANVISKDE 204
>tr|A7NSL8|A7NSL8_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00014313001 PE=4 SV=1 Length = 358
Score = 239 bits (611), Expect = 8e-62 Identities = 122/173 (70%), Positives = 141/173 (81%), Gaps = 1/173 (0%) Frame = +3
Query: 3 CFKNKVLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTD-DQEKICLEILE 179 C+KNKVLSWRS VEKD+DEVLQSH VY+NVSKGVLAKSKDL AAFG + DQ +I LEIL+ Sbjct: 33 CYKNKVLSWRSGVEKDLDEVLQSHIVYSNVSKGVLAKSKDLEAAFGKERDQTEILLEILD 92
Query: 180 KGELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKS 359 KGELQV+G ERE LSSQFRDIATIVMQKT+NP+TQRPYT SMIERLM E+HF+++PN S Sbjct: 93 KGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTSSMIERLMHEIHFSVDPNSS 152
Query: 360 SKKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 SKKQALE+I+EL+K FPI R MRL L VP L +KL WN+ I D+ Sbjct: 153 SKKQALEVIRELQKHFPIKRCPMRLRLTVPQQNFSSLLEKLNVWNASIVSKDE 205
>tr|A3BNW6|A3BNW6_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_024738 PE=4 SV=1 Length = 433
Score = 209 bits (531), Expect = 2e-52 Identities = 113/215 (52%), Positives = 138/215 (64%), Gaps = 48/215 (22%) Frame = +3
Query: 18 VLSWRSRVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTDDQEKICLEILEKGELQV 197 VLSWR+RVEKDIDEVLQSHTVY+NVSKGVLAKSKDL+ AF TDD ICLEIL+KGELQV Sbjct: 66 VLSWRTRVEKDIDEVLQSHTVYSNVSKGVLAKSKDLLKAFSTDDHTAICLEILDKGELQV 125
Query: 198 SGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEPNKSSKKQ-- 371 SG ERE LSSQF +IATIVM KT+NP+T+RPYTI+MIERLM +VHFA++PN +SK+Q Sbjct: 126 SGKEREAQLSSQFHEIATIVMDKTINPETRRPYTITMIERLMHDVHFAVDPNLTSKEQRN 185
Query: 372 ----------------------------------------------ALELIKELEKQFPI 413 AL++IK+L + FPI Sbjct: 186 NFVCVVWYLRSHLFNLDLQFFFNHVVYRLQQFCSTFFLQLINLAVTALKVIKKLTEHFPI 245
Query: 414 VRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 RA +R+ P + LT+KLEEWN+ + D+ Sbjct: 246 KRAPLRVRFTAPKSKFASLTEKLEEWNANVISKDE 280
>tr|A5BZ27|A5BZ27_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030008 PE=4 SV=1 Length = 250
Score = 207 bits (527), Expect = 4e-52 Identities = 112/176 (63%), Positives = 130/176 (73%), Gaps = 15/176 (8%) Frame = +3
Query: 36 RVEKDIDEVLQSHTVYTNVSKGVLAKSKDLIAAFGTD-DQEKICLE-------------- 170 R EKD+DEVLQSH VY+NVSKGVLAKSKDL AAFG + DQ +I LE Sbjct: 8 RKEKDLDEVLQSHIVYSNVSKGVLAKSKDLEAAFGKERDQTEILLEVSKIHYHTFEYTIL 67
Query: 171 ILEKGELQVSGMEREVHLSSQFRDIATIVMQKTVNPQTQRPYTISMIERLMREVHFALEP 350 IL+KGELQV+G ERE LSSQFRDIATIVMQKT+NP+TQRPYT SMIERLM E+HF+++P Sbjct: 68 ILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTSSMIERLMHEIHFSVDP 127
Query: 351 NKSSKKQALELIKELEKQFPIVRAKMRLHLLVPNDQGPKLTQKLEEWNSLIEQSDD 518 N SSKKQALE+I+EL+K FPI R MRL L VP L +KL WN+ I D+ Sbjct: 128 NSSSKKQALEVIRELQKHFPIKRCPMRLRLTVPQQNFSSLLEKLNVWNASIVSKDE 183
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