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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960508
Clone id TST39A01NGRL0007_J19
Library
Length 401
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_J19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAGCCATGGGGCCAAAGTCTTTGCTTACTGCGAATTGCCTTCTCAGGGCTTCGTTCTCTT
CGCTTCATGCGGCTTTGACTCCCCTTGAAAATGACATGCTGCACATTCTGCTGCAAGTGT
GTTCTCTTCACACCAGTTATGTGTACTACCAGTGATCATGCTTCTGCACCGGGTGATGGG
CGTGGTGTAAGCCCTGCTACCGGGCCTCTCCATCCTCCTCTTCGAGAAGACCGCAGCCAG
GACAACGTCCCTCTTGTCCAAAGTCATTGACGCCGAGGACTACCATGTTTATAGAGAGCT
CGCCGGTACTGAGCTATGCCTCTGGACTATTAACTTAGGGTTAACATTTACCGAAAACGG
CTTGCTGCACAAGGTCAACCACACAGATATTGACGGCTGCA
■■Homology search results ■■ -
sp_hit_id Q9BSE5
Definition sp|Q9BSE5|SPEB_HUMAN Agmatinase, mitochondrial OS=Homo sapiens
Align length 31
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960508|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_J19, 5'
         (401 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BSE5|SPEB_HUMAN Agmatinase, mitochondrial OS=Homo sapiens G...    30   2.8  
sp|Q29H56|MAB21_DROPS Protein mab-21 OS=Drosophila pseudoobscura...    29   6.3  
sp|Q9U3W6|MAB21_DROME Protein mab-21 OS=Drosophila melanogaster ...    29   6.3  
sp|Q5TW90|MAB21_ANOGA Protein mab-21 OS=Anopheles gambiae GN=mab...    29   6.3  
sp|Q0IES8|MAB21_AEDAE Protein mab-21 OS=Aedes aegypti GN=mab-21 ...    29   6.3  
sp|Q8CD26|S35E1_MOUSE Solute carrier family 35 member E1 OS=Mus ...    29   8.3  

>sp|Q9BSE5|SPEB_HUMAN Agmatinase, mitochondrial OS=Homo sapiens
           GN=AGMAT PE=1 SV=2
          Length = 352

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 160 ASAPGDGRGVSPATGPLHPPLREDRSQDNVP 252
           A  PG G G  PA G  HP  R+ R   + P
Sbjct: 10  ARGPGPGVGARPAAGLFHPGRRQSRQASDAP 40


>sp|Q29H56|MAB21_DROPS Protein mab-21 OS=Drosophila pseudoobscura
           pseudoobscura GN=mab-21 PE=3 SV=1
          Length = 365

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 301 ELSINMVVLGVNDFGQEGRCPGCGLLEEEDGEAR 200
           E+ I +  +GV +F  +G  PGC +L+  DG  R
Sbjct: 81  EIIIYLNQMGVLNFVDDGTLPGCAVLKLSDGRKR 114


>sp|Q9U3W6|MAB21_DROME Protein mab-21 OS=Drosophila melanogaster
           GN=mab-21 PE=1 SV=2
          Length = 365

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 301 ELSINMVVLGVNDFGQEGRCPGCGLLEEEDGEAR 200
           E+ I +  +GV +F  +G  PGC +L+  DG  R
Sbjct: 81  EIIIYLNQMGVLNFVDDGTLPGCAVLKLSDGRKR 114


>sp|Q5TW90|MAB21_ANOGA Protein mab-21 OS=Anopheles gambiae GN=mab-21
           PE=3 SV=2
          Length = 366

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 301 ELSINMVVLGVNDFGQEGRCPGCGLLEEEDGEAR 200
           E+ I +  +GV +F  +G  PGC +L+  DG  R
Sbjct: 81  EIIIYLNQMGVLNFVDDGTLPGCAVLKLSDGRKR 114


>sp|Q0IES8|MAB21_AEDAE Protein mab-21 OS=Aedes aegypti GN=mab-21
           PE=3 SV=1
          Length = 365

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 301 ELSINMVVLGVNDFGQEGRCPGCGLLEEEDGEAR 200
           E+ I +  +GV +F  +G  PGC +L+  DG  R
Sbjct: 81  EIIIYLNQMGVLNFVDDGTLPGCAVLKLSDGRKR 114


>sp|Q8CD26|S35E1_MOUSE Solute carrier family 35 member E1 OS=Mus
           musculus GN=Slc35e1 PE=1 SV=2
          Length = 409

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
 Frame = +1

Query: 19  LCLLRIAFSG----LRSLRFMRL*LPLKMTCCTFCCKCVLFTPVMCTTSDHASAP--GDG 180
           LCLL  A S     +  +       P+ ++ C     C    P++       + P  G G
Sbjct: 33  LCLLWYALSAGGNVVNKVILSAFPFPVTVSLCHILALCAGLPPLLRAWRVPPAPPVSGPG 92

Query: 181 RGVSPATGPLHPP 219
            G  PA+GPL PP
Sbjct: 93  PGPHPASGPLLPP 105
tr_hit_id B4MJR5
Definition tr|B4MJR5|B4MJR5_DROWI GK20881 OS=Drosophila willistoni
Align length 50
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960508|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_J19, 5'
         (401 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4MJR5|B4MJR5_DROWI GK20881 OS=Drosophila willistoni GN=GK208...    35   2.4  
tr|B6P916|B6P916_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|B6L873|B6L873_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|B3MD43|B3MD43_DROAN GF12001 OS=Drosophila ananassae GN=GF1200...    33   7.0  
tr|B3NRU4|B3NRU4_DROER GG22545 OS=Drosophila erecta GN=GG22545 P...    33   9.1  

>tr|B4MJR5|B4MJR5_DROWI GK20881 OS=Drosophila willistoni GN=GK20881
           PE=4 SV=1
          Length = 142

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +1

Query: 85  LKMTCCTFCCK-----CVLFTPVMCTTSDHASAPGDGRGVSPATGPLHPP 219
           L M+CC +CC       VL TPV+ T++ H +APG G  V+    P +PP
Sbjct: 15  LIMSCCGYCCSSKRRGTVLSTPVVVTSATH-TAPG-GYPVTQLPPPGYPP 62


>tr|B6P916|B6P916_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_104177 PE=4 SV=1
          Length = 1407

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 16  SLCLLRIAFSGLRSLRFM-RL*LPLKMTCCTFCCKCVLFTPVMCTTSDHASAPGDGRGVS 192
           S C L +      +L F  RL    +  CCT CC+C       C  +D+   P D     
Sbjct: 631 SSCWLMVVLVMPPTLNFWHRLFSSCEAACCTGCCRC------SCAATDNLQLPPDVECFL 684

Query: 193 PATGPLHPPLREDRSQDNVPLV 258
            +  P     R+D S+D++P++
Sbjct: 685 SSHDPQQSSGRQD-SEDDIPML 705


>tr|B6L873|B6L873_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_118428 PE=4 SV=1
          Length = 3158

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 16   SLCLLRIAFSGLRSLRFM-RL*LPLKMTCCTFCCKCVLFTPVMCTTSDHASAPGDGRGVS 192
            S C L +      +L F  RL    +  CCT CC+C       C  +D+   P D     
Sbjct: 2357 SSCWLMVVLVMPPTLNFWHRLFSSCEAACCTGCCRC------SCAATDNLQLPPDVECFL 2410

Query: 193  PATGPLHPPLREDRSQDNVPLV 258
             +  P     R+D S+D++P++
Sbjct: 2411 SSHDPQQSSGRQD-SEDDIPML 2431


>tr|B3MD43|B3MD43_DROAN GF12001 OS=Drosophila ananassae GN=GF12001
           PE=4 SV=1
          Length = 156

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +1

Query: 85  LKMTCCTFCCK-----CVLFTPVMCTTSDHASAPGDGRGVSPATGPLHP 216
           L M+CC +CC       VL TPV+ T++ HA APG G  V+    P +P
Sbjct: 15  LIMSCCGYCCSSRRQGTVLSTPVVVTSATHA-APG-GYPVTQLPPPGYP 61


>tr|B3NRU4|B3NRU4_DROER GG22545 OS=Drosophila erecta GN=GG22545 PE=4
           SV=1
          Length = 152

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
 Frame = +1

Query: 85  LKMTCCTFCCK-----CVLFTPVMCTTSDHAS----------APGDGRGVSPATGPLHPP 219
           L M+CC +CC       VL TPV+ T++ H +           PG   G +  T P +P 
Sbjct: 15  LIMSCCGYCCTTRRQGAVLSTPVVVTSATHTAPGGYPVTQLPPPGYPAGNAYVTSPSYPT 74

Query: 220 LREDRSQDNVPLVQSH 267
                    +P+   H
Sbjct: 75  QSSGNVTVQMPMPMPH 90