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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960512
Clone id TST39A01NGRL0007_J23
Library
Length 680
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_J23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGGCTATGGCGTATCCCAAGGCTCGCGGAGAAGACCCTCTTAACTATGAAGAGTACGAT
CCCACCCCTTTCTCAGGCGGCTACGATCAAGTTGCCCTCTACGGGCGCCCCAAGTCACCC
TCCCAGGAAACCTGTTACCCTATTTCTGAGATCTCTCATCATGAATCTGGCAGCTATGGT
GGTGGCTATGGGGGTAGCTATGGCGAAGACCACTCTAGTAAGCCCTCTCGCCCCGCTTAC
GGTGTAGATGAGGAGCGTCCCACCTACCAGGAAGAAAATCCCTCCACCGGATCCGATGAC
TTCACTTCTTCTGGCTATGGAAGACCTAGCTATGGATCTGGTTATGAACGGCCTAAGCCA
AGTTCTTTCGAAGAGGAAGGTGGCTATGGGGGATTTAAGCCCAGTTCTTATGAAGAGGAG
GGGGGCTATGGAGGTCACAAGCCCAGCTCTCACGAAGAAGAAGGGGGAGGAGGGTATGGA
TCTGGGTATAGCCGGCCAAAGCCTTCTTATGGAGAAGAAGAGGAAGGAGGGTTTGCATCT
GGGTATGGCAGGCCGAAGCCCTTGCATGAGGAAGGTGGACAGGAGTTTGGATCTGGGTAT
GGAGAGGGAGAAGAAGGGGGCTATGGCAGGCGTCCTGGGTATGGTGGGACTGGATATGGC
CGTCCGCATGAAGAGGGCTC
■■Homology search results ■■ -
sp_hit_id Q9FKA5
Definition sp|Q9FKA5|Y5957_ARATH Uncharacterized protein At5g39570 OS=Arabidopsis thaliana
Align length 46
Score (bit) 58.5
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960512|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_J23, 5'
         (680 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FKA5|Y5957_ARATH Uncharacterized protein At5g39570 OS=Arabi...    59   3e-08
sp|P13605|FMOD_BOVIN Fibromodulin OS=Bos taurus GN=FMOD PE=1 SV=2      33   1.4  
sp|Q5IS41|NCAN_PANTR Neurocan core protein OS=Pan troglodytes GN...    32   4.1  
sp|O14594|NCAN_HUMAN Neurocan core protein OS=Homo sapiens GN=NC...    32   4.1  
sp|Q68DX3|FRPD2_HUMAN FERM and PDZ domain-containing protein 2 O...    31   5.3  
sp|Q6IN97|FRP2L_HUMAN Putative protein FRMPD2-like OS=Homo sapie...    31   5.3  
sp|Q9DAQ4|CB081_MOUSE Uncharacterized protein C2orf81 homolog OS...    31   6.9  
sp|Q8WV28|BLNK_HUMAN B-cell linker protein OS=Homo sapiens GN=BL...    31   6.9  

>sp|Q9FKA5|Y5957_ARATH Uncharacterized protein At5g39570
           OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1
          Length = 381

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 24/46 (52%), Positives = 31/46 (67%)
 Frame = +1

Query: 7   MAYPKARGEDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYPI 144
           M Y      D  +++E+DPTP+SGGYD   +YGRP  PS ETCYP+
Sbjct: 1   MPYYTRDDNDVDDFDEFDPTPYSGGYDITVIYGRPIPPSDETCYPL 46


>sp|P13605|FMOD_BOVIN Fibromodulin OS=Bos taurus GN=FMOD PE=1 SV=2
          Length = 376

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 34  DPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETC 135
           DP  YE Y+P P+ G       YG P  P    C
Sbjct: 43  DPYPYEPYEPYPYGGEEGPAYAYGSPPQPEPRDC 76


>sp|Q5IS41|NCAN_PANTR Neurocan core protein OS=Pan troglodytes GN=NCAN
            PE=2 SV=1
          Length = 1321

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 268  GRWDAPHLHRKRGERAY*SGLRHSYPHSHHHSCQIHDERSQK 143
            G+WD P +   +  R++    RH + H HHH    H  R ++
Sbjct: 1262 GKWDRPQIVCTKPRRSH-RMRRHHHHHQHHHQHHHHKSRKER 1302


>sp|O14594|NCAN_HUMAN Neurocan core protein OS=Homo sapiens GN=NCAN
            PE=2 SV=3
          Length = 1321

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 268  GRWDAPHLHRKRGERAY*SGLRHSYPHSHHHSCQIHDERSQK 143
            G+WD P +   +  R++    RH + H HHH    H  R ++
Sbjct: 1262 GKWDRPQIVCTKPRRSH-RMRRHHHHHQHHHQHHHHKSRKER 1302


>sp|Q68DX3|FRPD2_HUMAN FERM and PDZ domain-containing protein 2
            OS=Homo sapiens GN=FRMPD2 PE=2 SV=1
          Length = 1309

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 229  ERAY*SGLRHSYPHSHHHSCQIHDERSQ 146
            ER + S L HS P SH H C++H ER +
Sbjct: 1242 ERPWASSLTHS-PESHPHLCKLHQERDE 1268


>sp|Q6IN97|FRP2L_HUMAN Putative protein FRMPD2-like OS=Homo sapiens
           GN=FRMPD2L1 PE=5 SV=1
          Length = 320

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 229 ERAY*SGLRHSYPHSHHHSCQIHDERSQ 146
           ER + S L HS P SH H C++H ER +
Sbjct: 253 ERPWASSLTHS-PESHPHLCKLHQERDE 279


>sp|Q9DAQ4|CB081_MOUSE Uncharacterized protein C2orf81 homolog
           OS=Mus musculus PE=2 SV=2
          Length = 598

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
 Frame = +2

Query: 341 VMNGLSQVLSKRKV---AMGDLSPVLMKRRGAMEVTSPALTKKKGEEG---------MDL 484
           V+   SQVL K  V    M  +  V M  RG  E+ +PA+ +K+ EEG         +  
Sbjct: 507 VLEATSQVLWKPMVISETMKLVPGVSMWNRGTQELLNPAVIRKEAEEGTPQAPEQQPIQT 566

Query: 485 GIAGQSLLMEKKRKE 529
           G++   ++M++ R E
Sbjct: 567 GVSKPQVIMKQIRNE 581


>sp|Q8WV28|BLNK_HUMAN B-cell linker protein OS=Homo sapiens GN=BLNK
           PE=1 SV=2
          Length = 456

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 676 PLHADGHIQSHHTQDACHSPLLLPLHTQI-QTPVHLP 569
           P+ A+ H  S H Q+A  SP+  P   QI Q P+ LP
Sbjct: 275 PIPAERHRGSSHRQEAVQSPVFPPAQKQIHQKPIPLP 311
tr_hit_id A7PMZ8
Definition tr|A7PMZ8|A7PMZ8_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera
Align length 41
Score (bit) 59.7
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960512|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_J23, 5'
         (680 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PMZ8|A7PMZ8_VITVI Chromosome chr14 scaffold_21, whole genom...    60   2e-07
tr|B6TUF7|B6TUF7_MAIZE Putative uncharacterized protein OS=Zea m...    59   4e-07
tr|Q5Y2E6|Q5Y2E6_PINHA Putative uncharacterized protein OS=Pinus...    58   6e-07
tr|Q9LPZ0|Q9LPZ0_ARATH T23J18.11 (At1g11440) (Putative serine/th...    57   1e-06
tr|Q7XXQ8|Q7XXQ8_ORYSJ Os06g0232000 protein OS=Oryza sativa subs...    57   1e-06
tr|A2YAZ8|A2YAZ8_ORYSI Putative uncharacterized protein OS=Oryza...    57   1e-06
tr|B4G1E6|B4G1E6_MAIZE Putative uncharacterized protein OS=Zea m...    56   2e-06
tr|B4F957|B4F957_MAIZE Putative uncharacterized protein OS=Zea m...    56   2e-06
tr|B6T4Q5|B6T4Q5_MAIZE Pro-resilin OS=Zea mays PE=2 SV=1               55   4e-06
tr|A7R6C3|A7R6C3_VITVI Chromosome undetermined scaffold_1227, wh...    55   4e-06
tr|A5BG40|A5BG40_VITVI Putative uncharacterized protein OS=Vitis...    55   4e-06
tr|Q9LJV8|Q9LJV8_ARATH Gb|AAF16629.1 OS=Arabidopsis thaliana GN=...    52   3e-05
tr|Q8L7V6|Q8L7V6_ARATH AT3g29075/MXE2_1 (Fragment) OS=Arabidopsi...    52   3e-05
tr|Q6NLC5|Q6NLC5_ARATH At3g29075 OS=Arabidopsis thaliana PE=2 SV=1     52   3e-05
tr|Q6Z4P3|Q6Z4P3_ORYSJ Os07g0682700 protein OS=Oryza sativa subs...    52   5e-05
tr|B8B639|B8B639_ORYSI Putative uncharacterized protein OS=Oryza...    52   5e-05
tr|Q6XNP6|Q6XNP6_HEVBR Latex abundant protein 1 OS=Hevea brasili...    50   1e-04
tr|Q6Z2V1|Q6Z2V1_ORYSJ Glycine-rich protein-like OS=Oryza sativa...    49   4e-04
tr|A3ABA2|A3ABA2_ORYSJ Putative uncharacterized protein OS=Oryza...    49   4e-04
tr|A2X9J1|A2X9J1_ORYSI Putative uncharacterized protein OS=Oryza...    49   4e-04
tr|A9TCZ4|A9TCZ4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.14 
tr|A9SVG4|A9SVG4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.18 
tr|A9SLE7|A9SLE7_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.18 
tr|Q9SSA4|Q9SSA4_ARATH Putative uncharacterized protein F4P13.4 ...    38   0.68 
tr|Q8LQ53|Q8LQ53_ORYSJ Protein kinase 6-like (Os01g0641000 prote...    37   0.89 
tr|A2ZVW4|A2ZVW4_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.89 
tr|A2WT32|A2WT32_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.89 
tr|B6U656|B6U656_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1       37   1.2  
tr|B6TE08|B6TE08_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1       37   1.2  
tr|B4FIB0|B4FIB0_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.2  

>tr|A7PMZ8|A7PMZ8_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021008001
           PE=4 SV=1
          Length = 383

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 25/41 (60%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +1

Query: 25  RGEDPLN-YEEYDPTPFSGGYDQVALYGRPKSPSQETCYPI 144
           R ED  + ++EYDPTP+ GGYD   +YGRP  PS+ETCYPI
Sbjct: 5   RNEDVSDEFDEYDPTPYGGGYDITVIYGRPLEPSEETCYPI 45


>tr|B6TUF7|B6TUF7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 203

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 22/40 (55%), Positives = 30/40 (75%)
 Frame = +1

Query: 25  RGEDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYPI 144
           R ++  +++EYDPTP+ GGYD    +GRP  PS+ETCYPI
Sbjct: 10  RADEVADFDEYDPTPYGGGYDIALTFGRPLPPSEETCYPI 49


>tr|Q5Y2E6|Q5Y2E6_PINHA Putative uncharacterized protein OS=Pinus
           halepensis PE=2 SV=1
          Length = 323

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 35/108 (32%), Positives = 47/108 (43%)
 Frame = +1

Query: 43  NYEEYDPTPFSGGYDQVALYGRPKSPSQETCYPIXXXXXXXXXXXXXXXXXXXXXXXXXK 222
           ++++YDPTPF GGYDQ   YG+ + PS+ETCYP                           
Sbjct: 11  DFDDYDPTPFGGGYDQGVTYGKSRPPSEETCYP------PSQAGDESSHDFSYGSESCPY 64

Query: 223 PSRPAYGVDEERPTYQEENPSTGSDDFTXXXXXXXXXXXXXERPKPSS 366
               A+ +DE+RPTY   + ST S +                RPKP S
Sbjct: 65  EGGGAHDIDEQRPTY--GSGSTPSYEAEESTYVGGGGGSDYGRPKPQS 110


>tr|Q9LPZ0|Q9LPZ0_ARATH T23J18.11 (At1g11440) (Putative
           serine/threonine protein kinase) OS=Arabidopsis thaliana
           GN=At1g11440/T23J18_11 PE=2 SV=1
          Length = 363

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 46  YEEYDPTPFSGGYDQVALYGRPKSPSQETCYP 141
           ++EYDPTP+ GGYD VA YG+P  PS ETCYP
Sbjct: 131 FDEYDPTPYGGGYDVVATYGKPLPPSVETCYP 162


>tr|Q7XXQ8|Q7XXQ8_ORYSJ Os06g0232000 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0232000 PE=2 SV=1
          Length = 381

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +1

Query: 31  EDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYP 141
           ++P +++EYDPTP+ GGYD    +GRP  PS ETCYP
Sbjct: 17  DEPDDFDEYDPTPYGGGYDLFITFGRPLPPSDETCYP 53


>tr|A2YAZ8|A2YAZ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22270 PE=4 SV=1
          Length = 381

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +1

Query: 31  EDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYP 141
           ++P +++EYDPTP+ GGYD    +GRP  PS ETCYP
Sbjct: 17  DEPDDFDEYDPTPYGGGYDLFITFGRPLPPSDETCYP 53


>tr|B4G1E6|B4G1E6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 329

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
 Frame = +1

Query: 13  YPKARG---EDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYP 141
           Y + RG   E+  +++E+DPTP+ GGYD    +GRP  PS+ETCYP
Sbjct: 6   YERPRGGAVEEADDFDEFDPTPYGGGYDLAVTFGRPLPPSEETCYP 51


>tr|B4F957|B4F957_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 377

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
 Frame = +1

Query: 13  YPKARG---EDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYP 141
           Y + RG   E+  +++E+DPTP+ GGYD    +GRP  PS+ETCYP
Sbjct: 6   YERPRGGAVEEADDFDEFDPTPYGGGYDLAVTFGRPLPPSEETCYP 51


>tr|B6T4Q5|B6T4Q5_MAIZE Pro-resilin OS=Zea mays PE=2 SV=1
          Length = 393

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
 Frame = +1

Query: 13  YPKARG---EDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYP 141
           Y + RG   E+  +++E+DPTP+ GGYD    +GRP  P++ETCYP
Sbjct: 6   YERPRGGAVEEADDFDEFDPTPYGGGYDLAVTFGRPLPPTEETCYP 51


>tr|A7R6C3|A7R6C3_VITVI Chromosome undetermined scaffold_1227, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008089001 PE=4 SV=1
          Length = 359

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 23/45 (51%), Positives = 31/45 (68%)
 Frame = +1

Query: 7   MAYPKARGEDPLNYEEYDPTPFSGGYDQVALYGRPKSPSQETCYP 141
           ++Y K+   +P ++EEYDPTP+ GGYD    YG+P  PS E CYP
Sbjct: 101 VSYNKSGFNEP-DFEEYDPTPYGGGYDIAQTYGKPLPPSDEICYP 144