DK960536
Clone id TST39A01NGRL0007_K23
Library
Length 609
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_K23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
TCAAGCTTGGAGTCTCAGCAAGGTACAAGTTATCTCAAGCCTCCCTGCCATCCATAGAGC
CTGCAGGATACTCTGAGCCAAGCACGAAAGCACCATGAAACCCCAGATCAACCACCTAGA
GGGCCCCCCAGTCTATTGTGCATATACTGAAGTTGCCCCCTGATGGTCCCGAGCTAGGGT
TTTGAGCTTGCGCCGTGCAAGCATCATGATGGGCCTATGTGCAGACAGCTTTTGTGCATG
GGTGCAATTCATCTTGGACTTGAGATTACGGTGCTCACCTTGGGGCCTTGTTTCCTACGC
TACAGAGAGCCCAAACAACATTTCAGCCTGACTACGTTGCGTGCATGGTATTTGCAGGTT
ACTGTGGGTGTCCCACTTTGGGGTTCTCATATAGAGCGGGCTCTAAGCTTATGTGCACAT
GACCAGAGCCAGTAGTGGTCTGTACTGCCTGTGGAGTTTTCTAGGCCGATTTTGCAATTT
TTGTGTGTGGGCTTGTAGGGCCAATCTTGTCTTCATTCTTTTGTTGTCGAAGCAGGTGCA
TTTGTGTTGTGGATGCAAATGTGGGGCAGAAGGTTGTCCTAGTATTTACAGGTGTTCTAC
TCGGTATCT
■■Homology search results ■■ -
sp_hit_id Q91VW5
Definition sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 OS=Mus musculus
Align length 25
Score (bit) 30.0
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960536|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_K23, 5'
(596 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 OS=Mus musculu... 30 9.2
sp|Q21227|APR1_CAEEL Adenomatous polyposis coli protein-related ... 30 9.2

>sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 OS=Mus musculus
GN=Golga4 PE=1 SV=2
Length = 2238

Score = 30.0 bits (66), Expect = 9.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -1

Query: 278 TRPQGEHRNLKSKMNCTHAQKLSAH 204
++P+ +HR L K++CT A++L H
Sbjct: 1780 SQPEAQHRALSGKLDCTRARQLEDH 1804


>sp|Q21227|APR1_CAEEL Adenomatous polyposis coli protein-related
protein 1 OS=Caenorhabditis elegans GN=apr-1 PE=1 SV=2
Length = 1188

Score = 30.0 bits (66), Expect = 9.2
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3

Query: 528 MHLLRQQKNEDKIGPTSPHTKIAKSA*KTPQAVQTT--TGSGHVHISLEPALYENPK 364
M+ L+QQKN ++ + IAKSA TP Q TG + +S E ++ NPK
Sbjct: 1125 MNALKQQKNIEQSPSIGNGSPIAKSAIVTPYNYQKPPFTGRNNGEMSNEKSVTPNPK 1181


tr_hit_id A2WJI6
Definition tr|A2WJI6|A2WJI6_9BURK Major facilitator superfamily (MFS_1) transporter OS=Burkholderia dolosa AUO158
Align length 68
Score (bit) 35.8
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960536|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_K23, 5'
(596 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2WJI6|A2WJI6_9BURK Major facilitator superfamily (MFS_1) tra... 36 1.9
tr|Q4RAW6|Q4RAW6_TETNG Chromosome undetermined SCAF22744, whole ... 35 3.3
tr|Q70K86|Q70K86_9ACTO Putative uncharacterized protein OS=Gordo... 35 4.3
tr|B3MEB3|B3MEB3_DROAN GF11912 OS=Drosophila ananassae GN=GF1191... 34 7.3
tr|Q5B3A8|Q5B3A8_EMENI Putative uncharacterized protein OS=Emeri... 33 9.5

>tr|A2WJI6|A2WJI6_9BURK Major facilitator superfamily (MFS_1)
transporter OS=Burkholderia dolosa AUO158 GN=BDAG_04993
PE=4 SV=1
Length = 425

Score = 35.8 bits (81), Expect = 1.9
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2

Query: 152 GPELGF*ACAVQAS*WAYVQTAFVHGCNS---SWT*DYGAHLGALFPTLQRAQTTFQPDY 322
G LGF +C + + AY+ F GC + S+T ++G +GALFP+L A +
Sbjct: 337 GFPLGFSSCGIFSGVGAYLTELFPSGCRANAQSFTYNFGRGIGALFPSLVGALSHSIGLA 396

Query: 323 VACMVFAG 346
A +F+G
Sbjct: 397 TAIAIFSG 404


>tr|Q4RAW6|Q4RAW6_TETNG Chromosome undetermined SCAF22744, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00038590001 PE=4 SV=1
Length = 263

Score = 35.0 bits (79), Expect = 3.3
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3

Query: 9 GTSYLKPPCHP*SLQDTLSQARKHHETPDQPPRGPPSLLCIY*SCPLMVPS*GFELAP 182
G++ + PP H + S AR H+ P+ P PPSL CP + P+ G +P
Sbjct: 15 GSAPVLPPYHYNTYHPDQSAARSHNRHPNNPLTAPPSL------CPSLSPALGHSFSP 66


>tr|Q70K86|Q70K86_9ACTO Putative uncharacterized protein OS=Gordonia
westfalica PE=4 SV=1
Length = 176

Score = 34.7 bits (78), Expect = 4.3
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1

Query: 211 DSFCAWVQFILDLRLRCSPWGLVSYATESPNNISA*LRCVHGICRLLWVSHFGVLI 378
D FCAWV+ D ++ SPW TE+P G C LLWV+ +I
Sbjct: 34 DEFCAWVEERYDREIKLSPW-----QTEAPEAGEP------GSCGLLWVTRDAFII 78


>tr|B3MEB3|B3MEB3_DROAN GF11912 OS=Drosophila ananassae GN=GF11912
PE=4 SV=1
Length = 664

Score = 33.9 bits (76), Expect = 7.3
Identities = 32/133 (24%), Positives = 51/133 (38%)
Frame = -1

Query: 542 HPQHKCTCFDNKRMKTRLALQAHTQKLQNRPRKLHRQYRPLLALVMCT*A*SPLYMRTPK 363
HPQ K F T A +KL N P+ + RP++A + A + + +
Sbjct: 428 HPQGKSKGFGFLSFDTHQRALAALRKLNNNPKIFGTERRPIVAFSIEDRAVHKIKEKRTE 487

Query: 362 WDTHSNLQIPCTQRSQAEMLFGLSVA*ETRPQGEHRNLKSKMNCTHAQKLSAHRPIMMLA 183
N Q+ + E + +PQG + K+K+ H +KL A R
Sbjct: 488 RSKLKNPTFQAKQQQRKERRQQKRNGQKAKPQGPQTDNKAKLQ-KHIKKLEASRTAKAEG 546

Query: 182 RRKLKTLARDHQG 144
++ K D QG
Sbjct: 547 KQNEKKKLSDVQG 559


>tr|Q5B3A8|Q5B3A8_EMENI Putative uncharacterized protein
OS=Emericella nidulans GN=AN4972.2 PE=4 SV=1
Length = 883

Score = 33.5 bits (75), Expect = 9.5
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3

Query: 594 IPSRTPVNTRTTFCPTFASTTQMHLLRQQKNEDK-IGPTSPH--TKIAKSA*KTPQAVQT 424
+ SR PV T T PT AST H+ N + P+S H T +A T Q+
Sbjct: 774 VNSRPPVTTAVTQFPTLASTPSFHISPPNNNHKQGQSPSSQHQMTALALQQSHTAPLTQS 833

Query: 423 TTGSGHVH 400
+ G +H
Sbjct: 834 SRNEGRLH 841