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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960543
Clone id TST39A01NGRL0007_L06
Library
Length 667
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_L06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAGAAAACTAGCATTTCCTAGTCTAATCTTTTGATCCTAGGCATCATCTTCAATTGCATA
ATATTTTTTTTCACCTATATAATTAATTGCATATTTCCCCTAGCTCCAAGTACATAATCT
CTTTTTATTTTTTAATGGTTAGAGCTGCCATTAGTGACACATCGAAGTCAACTTGCTAAT
GTTTTCCTGCATGCAAGTTGAGGCCTCATCAAAGGGAAAGTAACTCGGCAAGTTGAGGCC
CATCAAAGGGAAAGGAGCACTATTGCACGATCAAAGGTGAAGTGGGAGTGCCAAGCCCTT
TTCTTCAAGCATCTCTCTCTAGGCTTCGGGCCTCGCATCAGCTCTCGCTACCATACATGA
GCCCTTGCAAGCTCGTCGTCTTCTCAACCATTTTCCTTGCAATCCCATTCCTAGCATGCT
CATTGTATCCATTCGTGCTCTTCCATGCCCGGGCTCCTGCCGCGCTTAAACGAGCCAATT
ATGTCATGTAACCTCTCTGCCCAAGACAGCTACAACATATCTACCTGGCTTTGATTGTCT
CAAGCTGCCCGTACATGCCGCTATCGACCTCTGTTATATACCTCCTACATGCCCTCGGCT
ACTCTCAGCCTTGCCGTGCCAAACTACATATACTGTTGCCCTTTTTTTTTTCCCCACCGG
ATTCATC
■■Homology search results ■■ -
sp_hit_id A1L1L2
Definition sp|A1L1L2|TM214_RAT Transmembrane protein 214 OS=Rattus norvegicus
Align length 93
Score (bit) 31.2
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960543|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L06, 5'
         (667 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1L1L2|TM214_RAT Transmembrane protein 214 OS=Rattus norvegic...    31   5.2  
sp|Q8BM55|TM214_MOUSE Transmembrane protein 214 OS=Mus musculus ...    31   5.2  
sp|P44560|TATC_HAEIN Sec-independent protein translocase protein...    31   6.7  
sp|P04275|VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF...    31   6.8  

>sp|A1L1L2|TM214_RAT Transmembrane protein 214 OS=Rattus norvegicus
           GN=Tmem214 PE=2 SV=1
          Length = 685

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 27/93 (29%), Positives = 36/93 (38%)
 Frame = +3

Query: 357 MSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PLCPRQLQHIYLALI 536
           +SP        +F  +  LA    P    H   P+ L RA     P CP  ++   LA +
Sbjct: 332 LSPSLQEQLCQLFPRLKVLAFGAKPESSLHTYFPSFLSRAT----PSCPAAMKKELLASL 387

Query: 537 VSSCPYMPLSTSVIYLLHALGYSQPCRAKLHIL 635
                  PLSTSV   L+    SQ      H+L
Sbjct: 388 TQCLTVDPLSTSVWRQLYPKHLSQSSLLLEHLL 420


>sp|Q8BM55|TM214_MOUSE Transmembrane protein 214 OS=Mus musculus
           GN=Tmem214 PE=2 SV=1
          Length = 687

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 27/93 (29%), Positives = 36/93 (38%)
 Frame = +3

Query: 357 MSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PLCPRQLQHIYLALI 536
           +SP        +F  +  LA    P    H   P+ L RA     P CP  ++   LA +
Sbjct: 334 LSPSLQEQLCQLFPRLKVLAFGAKPESSLHTYFPSFLSRAT----PSCPAAMKKELLASL 389

Query: 537 VSSCPYMPLSTSVIYLLHALGYSQPCRAKLHIL 635
                  PLSTSV   L+    SQ      H+L
Sbjct: 390 TQCLTVDPLSTSVWRQLYPKHLSQSSLLLEHLL 422


>sp|P44560|TATC_HAEIN Sec-independent protein translocase protein
           tatC OS=Haemophilus influenzae GN=tatC PE=3 SV=1
          Length = 256

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 342 LSLPYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           +  P+ +P KL     IF+++P+L   ++ F+     APA  +    ++ PL
Sbjct: 65  IQTPFFTPIKLTAIVAIFISVPYLLYQIWAFI-----APALYQHEKRMIYPL 111


>sp|P04275|VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF PE=1
            SV=2
          Length = 2813

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +2

Query: 425  VSIRALPCPGSCRA*TSQLCHVTSLPKTATTYLPGFDCLKLPVHAAIDLCYIPPT--C-- 592
            V+    PCP + +A T  LC V  L + A    P ++C+  PV      C +PP   C  
Sbjct: 2289 VNCTTQPCP-TAKAPTCGLCEVARLRQNADQCCPEYECVCDPVS-----CDLPPVPHCER 2342

Query: 593  ---PRLLSALPCQTTYTVA 640
               P L +   C+  +T A
Sbjct: 2343 GLQPTLTNPGECRPNFTCA 2361
tr_hit_id Q2SN19
Definition tr|Q2SN19|Q2SN19_HAHCH Sec-independent protein translocase TatC OS=Hahella chejuensis (strain KCTC 2396)
Align length 76
Score (bit) 35.8
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960543|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L06, 5'
         (667 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2SN19|Q2SN19_HAHCH Sec-independent protein translocase TatC ...    36   2.5  
tr|A7JUI8|A7JUI8_PASHA Tat family twin arginine targeting protei...    35   4.2  
tr|Q1R005|Q1R005_CHRSD Sec-independent protein translocase TatC ...    35   5.5  
tr|A6VM42|A6VM42_ACTSZ Sec-independent protein translocase, TatC...    35   5.5  
tr|A3UP60|A3UP60_VIBSP Sec-independent protein secretion pathway...    35   5.5  
tr|Q9KVQ3|Q9KVQ3_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A5F4G0|A5F4G0_VIBC3 Putative membrane protein OS=Vibrio chole...    34   9.3  
tr|A6XZH0|A6XZH0_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A6D2C8|A6D2C8_9VIBR Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A6ACH2|A6ACH2_VIBCH Twin arginine-targeting protein transloca...    34   9.3  
tr|A6A5G0|A6A5G0_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A3GZ28|A3GZ28_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A3GMV2|A3GMV2_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A3EJV1|A3EJV1_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A3EGE1|A3EGE1_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A2PSA5|A2PSA5_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A2PJC3|A2PJC3_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A2P7W8|A2P7W8_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A1F6F5|A1F6F5_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|A1EMT6|A1EMT6_VIBCH Putative uncharacterized protein OS=Vibri...    34   9.3  
tr|Q96ZW9|Q96ZW9_SULTO Putative uncharacterized protein ST1718 O...    34   9.3  

>tr|Q2SN19|Q2SN19_HAHCH Sec-independent protein translocase TatC
           OS=Hahella chejuensis (strain KCTC 2396) GN=tatC PE=4
           SV=1
          Length = 254

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +3

Query: 339 QLSLPYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PLCPRQLQH 518
           +++ P+++P KL +   IF+ IPF+   ++ F+     APA  K    +  PL    +  
Sbjct: 68  EVASPFLAPFKLTMVLAIFIVIPFILYQIWSFI-----APALYKHEKKLAIPLLVSSVLL 122

Query: 519 IYLALIVSSCPYMPLS 566
            YL +  +     PL+
Sbjct: 123 FYLGVAFAYYVVFPLA 138


>tr|A7JUI8|A7JUI8_PASHA Tat family twin arginine targeting protein
           TatC OS=Mannheimia haemolytica PHL213 GN=tatC PE=4 SV=1
          Length = 251

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 342 LSLPYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           ++ P+ +P KL +  ++FL++PF+   ++ FV     APA  K+   ++ PL
Sbjct: 65  VATPFFTPIKLTIVVSVFLSVPFILYQIWAFV-----APALYKQEKRLVYPL 111


>tr|Q1R005|Q1R005_CHRSD Sec-independent protein translocase TatC
           OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
           BAA-138 / NCIMB 13768) GN=Csal_0591 PE=4 SV=1
          Length = 255

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +3

Query: 339 QLSLPYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PLCPRQLQH 518
           +++ P+++P KL +F+ +F+A+PF+    + FV     AP   +    +  PL    +  
Sbjct: 71  EVASPFLAPFKLTLFAALFIAVPFVLYQAWAFV-----APGLYRHEKALAFPLLASSILL 125

Query: 519 IYLALIVSSCPYMPL 563
            Y  +  +     PL
Sbjct: 126 FYAGVAFAYFVVFPL 140


>tr|A6VM42|A6VM42_ACTSZ Sec-independent protein translocase, TatC
           subunit OS=Actinobacillus succinogenes (strain ATCC
           55618 / 130Z) GN=Asuc_0666 PE=4 SV=1
          Length = 251

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +3

Query: 342 LSLPYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PLCPRQLQHI 521
           ++ P+ +P KL   + IFL++PFL   ++ FV     APA  +    ++ PL        
Sbjct: 65  VAAPFFTPIKLTGIAAIFLSVPFLLYQIWAFV-----APALYQHEKRLVYPLLISSTILF 119

Query: 522 YLALIVSSCPYMPLSTSVI 578
           YL +  +     PL  S +
Sbjct: 120 YLGVAFAYYVVFPLVFSFL 138


>tr|A3UP60|A3UP60_VIBSP Sec-independent protein secretion pathway
           component TatC OS=Vibrio splendidus 12B01
           GN=V12B01_02290 PE=4 SV=1
          Length = 251

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 351 PYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           P+ +P KL + ++IFLA+PF+   ++ FV     AP   K    ++ PL
Sbjct: 68  PFFTPLKLTLIASIFLAVPFILYQVWAFV-----APGLYKHEKRLIMPL 111


>tr|Q9KVQ3|Q9KVQ3_VIBCH Putative uncharacterized protein OS=Vibrio
           cholerae GN=VC_0088 PE=4 SV=1
          Length = 250

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 351 PYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           P+ +P KL + + +FLA+PF+   ++ FV     AP   K    ++ PL
Sbjct: 68  PFFTPLKLTLIAAVFLAVPFILYQVWAFV-----APGLYKHERRLIFPL 111


>tr|A5F4G0|A5F4G0_VIBC3 Putative membrane protein OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=VC0395_A2427 PE=4 SV=1
          Length = 250

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 351 PYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           P+ +P KL + + +FLA+PF+   ++ FV     AP   K    ++ PL
Sbjct: 68  PFFTPLKLTLIAAVFLAVPFILYQVWAFV-----APGLYKHERRLIFPL 111


>tr|A6XZH0|A6XZH0_VIBCH Putative uncharacterized protein OS=Vibrio
           cholerae AM-19226 GN=A33_0112 PE=4 SV=1
          Length = 249

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 351 PYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           P+ +P KL + + +FLA+PF+   ++ FV     AP   K    ++ PL
Sbjct: 68  PFFTPLKLTLIAAVFLAVPFILYQVWAFV-----APGLYKHERRLIFPL 111


>tr|A6D2C8|A6D2C8_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_13195 PE=4 SV=1
          Length = 251

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 351 PYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           P+ +P KL + ++IF+A+PF+   ++ FV     AP   K    ++ PL
Sbjct: 68  PFFTPLKLTLIASIFIAVPFILYQVWAFV-----APGLYKHERRLVMPL 111


>tr|A6ACH2|A6ACH2_VIBCH Twin arginine-targeting protein translocase
           TatC OS=Vibrio cholerae 623-39 GN=tatC PE=4 SV=1
          Length = 249

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 351 PYMSPCKLVVFSTIFLAIPFLACSLYPFVLFHARAPAALKRANYVM*PL 497
           P+ +P KL + + +FLA+PF+   ++ FV     AP   K    ++ PL
Sbjct: 68  PFFTPLKLTLIAAVFLAVPFILYQVWAFV-----APGLYKHERRLIFPL 111