DK960544 |
Clone id |
TST39A01NGRL0007_L07 |
Library |
TST39 |
Length |
657 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_L07. 5' end sequence. |
Accession |
DK960544 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL36Contig1 |
Sequence |
CTGCTGCGGAATACTCGTCGGCGACAGCCATGGGTCGAAGTTACGTCCGATGTCGATTCG GGTCTGTGTGCAACGGACCTCCGAGTACTTGCTATTTGGACGCCTCATCTTTTGTCGGCT CCATTTTCTCTGGAGCTTCAGCATTTTGGGGCAGCTCCCTGCTTTATTTCTGGGCCGTTT TTTTTCAAGTACGGACATTTGGTTGCTCGTCCGAGGAACAGGACCTGCAAGGTGCTACCG GCAGATTAAAAACAAGCCATATCCAAAATCTCGTTACTGTAGGGGTGTACCCGACCCAAA AATTCGTATATATGATGTTGGCATGAAGAAAAAGGGTGTTGATGAGTTTCCCTTTTGTGT GCACCTTGTGAGTTGGGAGAAAGAAAATGTCTCCAGTGAAGGCCTGGAGGCAGCTCGTAT TGCTTGCAACAAATACATGACAAAATTTGCTGGAAAGGATGCTTTTCATCTACGAGTTCG CGTGCACCCTTTCCATGTTCTTCGTATCAACAAGATGCTTTCATGTGCCGGAGCTGATAG GCTCCAGACAGGAATGAGGGGTGCTTTTGGAAAGCCCCAGGGCACTTGTGCGCGAGTTGA CATTGGGCAGGTCCTATTGAGCGTCCGCTGCAAGGACAATAATGGTATACATGCCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SPB3 |
Definition |
sp|Q9SPB3|RL10_VITRI 60S ribosomal protein L10 OS=Vitis riparia |
Align length |
147 |
Score (bit) |
293.0 |
E-value |
4.0e-79 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QTC5 |
Definition |
tr|A7QTC5|A7QTC5_VITVI Chromosome chr1 scaffold_166, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
147 |
Score (bit) |
297.0 |
E-value |
3.0e-79 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960544|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_L07, 5' (657 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QTC5|A7QTC5_VITVI Chromosome chr1 scaffold_166, whole genom... 297 3e-79 tr|B6TD86|B6TD86_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P... 295 2e-78 tr|B6TAQ2|B6TAQ2_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P... 295 2e-78 tr|B6T5B9|B6T5B9_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P... 295 2e-78 tr|B4FPT8|B4FPT8_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P... 295 2e-78 tr|A7NXZ2|A7NXZ2_VITVI Chromosome chr6 scaffold_3, whole genome ... 295 2e-78 tr|A9U2S2|A9U2S2_PHYPA Predicted protein OS=Physcomitrella paten... 293 8e-78 tr|A9TWJ0|A9TWJ0_PHYPA Predicted protein OS=Physcomitrella paten... 293 8e-78 tr|A9RQA3|A9RQA3_PHYPA Predicted protein OS=Physcomitrella paten... 293 8e-78 tr|B6UGR9|B6UGR9_MAIZE 60S ribosomal protein L10-3 OS=Zea mays P... 292 1e-77 tr|Q6DV76|Q6DV76_9FABA QM family protein OS=Caragana jubata GN=Q... 291 2e-77 tr|A9RCU9|A9RCU9_PHYPA Predicted protein (Fragment) OS=Physcomit... 291 2e-77 tr|B7E5G0|B7E5G0_ORYSJ cDNA clone:001-035-D11, full insert seque... 291 2e-77 tr|Q9FUN3|Q9FUN3_ELAGV QM-like protein OS=Elaeis guineensis var.... 290 4e-77 tr|Q6DV42|Q6DV42_CAMSI QM-like protein OS=Camellia sinensis PE=2... 290 4e-77 tr|B7FGF8|B7FGF8_MEDTR Putative uncharacterized protein OS=Medic... 290 5e-77 tr|B3TLM0|B3TLM0_ELAGV QM-like protein OS=Elaeis guineensis var.... 290 7e-77 tr|B8AYH0|B8AYH0_ORYSI Putative uncharacterized protein OS=Oryza... 289 1e-76 tr|B7EBT7|B7EBT7_ORYSJ cDNA clone:002-188-A02, full insert seque... 289 1e-76 tr|A3B0D3|A3B0D3_ORYSJ Putative uncharacterized protein OS=Oryza... 289 1e-76 tr|A9PGG5|A9PGG5_POPTR Putative uncharacterized protein OS=Popul... 288 2e-76 tr|A9P8W6|A9P8W6_POPTR Putative uncharacterized protein OS=Popul... 288 2e-76 tr|Q3SC85|Q3SC85_SOLLC 60S ribosomal protein L10 OS=Solanum lyco... 287 3e-76 tr|Q38HS5|Q38HS5_SOLTU 60S ribosomal protein L10-like protein OS... 286 8e-76 tr|Q7X9L9|Q7X9L9_WHEAT QM (Fragment) OS=Triticum aestivum PE=2 SV=2 284 4e-75 tr|A9NPP8|A9NPP8_PICSI Putative uncharacterized protein OS=Picea... 280 7e-74 tr|Q2HIH6|Q2HIH6_ARATH At1g26910 OS=Arabidopsis thaliana PE=2 SV=1 278 3e-73 tr|A9NPT9|A9NPT9_PICSI Putative uncharacterized protein OS=Picea... 275 2e-72 tr|Q0DS57|Q0DS57_ORYSJ Os03g0332500 protein OS=Oryza sativa subs... 270 7e-71 tr|A2XGB9|A2XGB9_ORYSI Putative uncharacterized protein OS=Oryza... 269 1e-70
>tr|A7QTC5|A7QTC5_VITVI Chromosome chr1 scaffold_166, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006249001 PE=4 SV=1 Length = 224
Score = 297 bits (761), Expect = 3e-79 Identities = 141/147 (95%), Positives = 142/147 (96%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQGTCARV+IGQVLLSVRCKD NG HA Sbjct: 122 PQGTCARVNIGQVLLSVRCKDGNGNHA 148
>tr|B6TD86|B6TD86_MAIZE 60S ribosomal protein L10-3 OS=Zea mays PE=2 SV=1 Length = 220
Score = 295 bits (754), Expect = 2e-78 Identities = 139/147 (94%), Positives = 141/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQGTCARVDIGQVLLSVRCKDNN HA Sbjct: 122 PQGTCARVDIGQVLLSVRCKDNNAAHA 148
>tr|B6TAQ2|B6TAQ2_MAIZE 60S ribosomal protein L10-3 OS=Zea mays PE=2 SV=1 Length = 220
Score = 295 bits (754), Expect = 2e-78 Identities = 139/147 (94%), Positives = 141/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQGTCARVDIGQVLLSVRCKDNN HA Sbjct: 122 PQGTCARVDIGQVLLSVRCKDNNAAHA 148
>tr|B6T5B9|B6T5B9_MAIZE 60S ribosomal protein L10-3 OS=Zea mays PE=2 SV=1 Length = 220
Score = 295 bits (754), Expect = 2e-78 Identities = 139/147 (94%), Positives = 141/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQGTCARVDIGQVLLSVRCKDNN HA Sbjct: 122 PQGTCARVDIGQVLLSVRCKDNNAAHA 148
>tr|B4FPT8|B4FPT8_MAIZE 60S ribosomal protein L10-3 OS=Zea mays PE=2 SV=1 Length = 220
Score = 295 bits (754), Expect = 2e-78 Identities = 139/147 (94%), Positives = 141/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQGTCARVDIGQVLLSVRCKDNN HA Sbjct: 122 PQGTCARVDIGQVLLSVRCKDNNAAHA 148
>tr|A7NXZ2|A7NXZ2_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023920001 PE=4 SV=1 Length = 231
Score = 295 bits (754), Expect = 2e-78 Identities = 139/145 (95%), Positives = 140/145 (96%) Frame = +2
Query: 221 GPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 400 GPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE Sbjct: 15 GPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSE 74
Query: 401 GLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 580 LEAARIACNKYMTK+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ Sbjct: 75 ALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 134
Query: 581 GTCARVDIGQVLLSVRCKDNNGIHA 655 GTCARV IGQVLLSVRCKD N HA Sbjct: 135 GTCARVSIGQVLLSVRCKDGNSHHA 159
>tr|A9U2S2|A9U2S2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_227764 PE=4 SV=1 Length = 223
Score = 293 bits (749), Expect = 8e-78 Identities = 137/147 (93%), Positives = 141/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQG CARV IGQVLLSVRCKD NG+HA Sbjct: 122 PQGVCARVAIGQVLLSVRCKDQNGVHA 148
>tr|A9TWJ0|A9TWJ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172372 PE=4 SV=1 Length = 223
Score = 293 bits (749), Expect = 8e-78 Identities = 137/147 (93%), Positives = 141/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQG CARV IGQVLLSVRCKD NG+HA Sbjct: 122 PQGVCARVAIGQVLLSVRCKDQNGVHA 148
>tr|A9RQA3|A9RQA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177230 PE=4 SV=1 Length = 223
Score = 293 bits (749), Expect = 8e-78 Identities = 137/147 (93%), Positives = 141/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQG CARV IGQVLLSVRCKD NG+HA Sbjct: 122 PQGVCARVAIGQVLLSVRCKDQNGVHA 148
>tr|B6UGR9|B6UGR9_MAIZE 60S ribosomal protein L10-3 OS=Zea mays PE=2 SV=1 Length = 220
Score = 292 bits (748), Expect = 1e-77 Identities = 138/147 (93%), Positives = 140/147 (95%) Frame = +2
Query: 215 GTGPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVS 394 G PARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVS Sbjct: 2 GRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVS 61
Query: 395 SEGLEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 574 SE LEAARIACNKYMTK AGKDAFHL VRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK Sbjct: 62 SEALEAARIACNKYMTKSAGKDAFHLXVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK 121
Query: 575 PQGTCARVDIGQVLLSVRCKDNNGIHA 655 PQGTCARVDIGQVLLSVRCKDNN HA Sbjct: 122 PQGTCARVDIGQVLLSVRCKDNNAAHA 148
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