DK960545
Clone id TST39A01NGRL0007_L10
Library
Length 650
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_L10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CTAGCACTCAAGTGCAAAGCACGAGCCAAAACAGCTCTGTGGAATCTGCATTGAGCAACA
TTCCAGCTTGCCATTGCCAGCTTCTCTCTGTGTCACAGCCAAGGGTGGGCTCTTTGGAGA
ATAGTAATGTGCCCTTGAGGCCTGTTGGGTATTGGAGAAGTCTCTTCACTGGCAGTAATG
GATTTGCTAGCACGGTGGAGACAACTGAGTGCGTCTGTCCACAGAATTATCTTCATTCTC
TGCAAGAGAGAGAGGATATGGTTTCAAGACATCAAGTGAAGCTAGAGCTAACATCATGCT
CCCCGGGATGGGCATGCAATTCTTCCCCAAGCTTTTGGGGCTTAGATATGGCTAGGATGA
AGGTGCAGAAAAGCTCGGACGAATGGAAATTTACAATGCTGAGGCTGAATGCGCCCGATG
TGCAAAGTGATAGTGGGTCATCGTCCTCTGTTGTTCTTGATGGGGAGGCTGCCTCTCTCT
CAAGGAAGAGGCCCTTGCTGGACTTGAACCTTCCTGCCTCAGCTTGCGAGGAGAGCCCAC
AGGATTGCAAGAAACTCTGCTCATGGTCTTTATGAGGAATACAAGCCTGGTTTTGGTCTC
TTCCTATACATCCCCTACTCTTATTGCTACAACAATTTTGGCTTAATATG
■■Homology search results ■■ -
sp_hit_id Q6DFV3
Definition sp|Q6DFV3|RHG21_MOUSE Rho GTPase-activating protein 21 OS=Mus musculus
Align length 44
Score (bit) 30.8
E-value 6.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960545|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L10, 5'
(633 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6DFV3|RHG21_MOUSE Rho GTPase-activating protein 21 OS=Mus mu... 31 6.1

>sp|Q6DFV3|RHG21_MOUSE Rho GTPase-activating protein 21 OS=Mus
musculus GN=Arhgap21 PE=1 SV=1
Length = 1944

Score = 30.8 bits (68), Expect = 6.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = +3

Query: 219 PQNYLHS-------LQEREDMVSRHQVKLELTSCSPGWACNSSP 329
P N+LH Q R + HQ++ E++SC PG + +SP
Sbjct: 644 PVNHLHQHSVLSQQTQFRSESTFEHQLETEVSSCLPGTSAKTSP 687


tr_hit_id Q8WPM5
Definition tr|Q8WPM5|Q8WPM5_OIKDI Transmembrane receptor-like protein OS=Oikopleura dioica
Align length 67
Score (bit) 34.7
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960545|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L10, 5'
(633 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8WPM5|Q8WPM5_OIKDI Transmembrane receptor-like protein OS=Oi... 35 4.9
tr|Q88RT0|Q88RT0_PSEPK Putative uncharacterized protein OS=Pseud... 34 6.4
tr|B1J406|B1J406_PSEPW Putative uncharacterized protein OS=Pseud... 34 6.4
tr|B0KF10|B0KF10_PSEPG Putative uncharacterized protein OS=Pseud... 34 6.4
tr|A5VWH9|A5VWH9_PSEP1 Putative uncharacterized protein OS=Pseud... 34 6.4

>tr|Q8WPM5|Q8WPM5_OIKDI Transmembrane receptor-like protein
OS=Oikopleura dioica GN=BAC001.10 PE=4 SV=1
Length = 1756

Score = 34.7 bits (78), Expect = 4.9
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3

Query: 105 VGSLENS-NVPLRPVGYWRSLFTGSNGFASTVETTECVCPQNYLHSLQEREDMVSRHQVK 281
+G+LE S N+ P GYW ++S ++ T CP++ + + E+M +R +K
Sbjct: 851 LGTLEKSTNMLNEPGGYW--------AWSSEIDATSRTCPED---GVWKEENMHNRSNIK 899

Query: 282 LELTSCS 302
L T CS
Sbjct: 900 LSYTKCS 906


>tr|Q88RT0|Q88RT0_PSEPK Putative uncharacterized protein
OS=Pseudomonas putida (strain KT2440) GN=PP0049 PE=4
SV=1
Length = 488

Score = 34.3 bits (77), Expect = 6.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2

Query: 206 SCLHRASKSITASEETSPIPNRPQGHITILQRAH 105
S HR + IT EETS + RP G T+++ AH
Sbjct: 311 SSAHRGTHLITVEEETSLLSGRPNGLFTLMENAH 344


>tr|B1J406|B1J406_PSEPW Putative uncharacterized protein
OS=Pseudomonas putida (strain W619) GN=PputW619_0067
PE=4 SV=1
Length = 488

Score = 34.3 bits (77), Expect = 6.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2

Query: 206 SCLHRASKSITASEETSPIPNRPQGHITILQRAH 105
S HR + IT EETS + RP G T+++ AH
Sbjct: 311 SSAHRGTHLITVEEETSLLSGRPNGLFTLMENAH 344


>tr|B0KF10|B0KF10_PSEPG Putative uncharacterized protein
OS=Pseudomonas putida (strain GB-1) GN=PputGB1_0064 PE=4
SV=1
Length = 475

Score = 34.3 bits (77), Expect = 6.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2

Query: 206 SCLHRASKSITASEETSPIPNRPQGHITILQRAH 105
S HR + IT EETS + RP G T+++ AH
Sbjct: 298 SSAHRGTHLITVEEETSLLSGRPNGLFTLMENAH 331


>tr|A5VWH9|A5VWH9_PSEP1 Putative uncharacterized protein
OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=Pput_0064 PE=4 SV=1
Length = 488

Score = 34.3 bits (77), Expect = 6.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2

Query: 206 SCLHRASKSITASEETSPIPNRPQGHITILQRAH 105
S HR + IT EETS + RP G T+++ AH
Sbjct: 311 SSAHRGTHLITVEEETSLLSGRPNGLFTLMENAH 344