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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960547
Clone id TST39A01NGRL0007_L12
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_L12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CAACTGGTAATTGCAGGAGATGCAGATGTTATTGAAGCCTCTCCGTCTGTAGCTACACAT
ACGCCCGCCCTCGTAACAACGAGCCAAGATATTCTATCTGAGTGAGAACATCTCTTGAAC
CCTTGAAGGAGACTCTACTTGGCATAAGTTAGTTGGCTGATGTGTTCGTTTTTGTTCTTC
TTCAGTGATGTACAGGTGAATGATGCTCTCGGATTTCAAATCGAAGTCCAACGAAAGCTT
CATGAGCAGCTGGAGGTAAAGCAAGTTGTTCCGTATGCGTCGACATGTGCCTTCTGGGAA
TTATTTATCCATATGCACACTTGTGTTCACCTTAGCTTGATTGCAAGAAGTGCCTTACAT
TCTTGGGTCTTTTCAGGTTCAAAGGCTCTTACAAGTACGCATTGAGGCGCAAGGTAGGTA
CCTGCAATCCATTCTTGAAAAGGCACAACAAACTCTTGCAGGTCAGACGGTCGCAAATAT
TGGACTCGAAGCTGCCCGTGCCGAACTTTCGGATCTGGCGTCCAAGGTTTCGAATGATTG
TTTCTCACTGGCAGCCAGTCTTCCTCGCGCCGATGC
■■Homology search results ■■ -
sp_hit_id Q12182
Definition sp|Q12182|YO342_YEAST Uncharacterized protein YOR342C OS=Saccharomyces cerevisiae
Align length 33
Score (bit) 31.2
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960547|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L12, 5'
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12182|YO342_YEAST Uncharacterized protein YOR342C OS=Sacchar...    31   3.9  
sp|Q6C7Q0|PFA4_YARLI Palmitoyltransferase PFA4 OS=Yarrowia lipol...    31   5.1  
sp|P75870|YCCS_ECOLI Inner membrane protein yccS OS=Escherichia ...    30   6.6  

>sp|Q12182|YO342_YEAST Uncharacterized protein YOR342C
           OS=Saccharomyces cerevisiae GN=YOR342C PE=1 SV=1
          Length = 319

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 560 DWLPVRNNHSKPWTPDPKVRHGQLRVQYLRPSD 462
           D+L   NNH +P TP P+  +    VQ+  PSD
Sbjct: 104 DFLSGINNHGEPLTPPPESHYRNAYVQFDHPSD 136


>sp|Q6C7Q0|PFA4_YARLI Palmitoyltransferase PFA4 OS=Yarrowia
           lipolytica GN=PFA4 PE=3 SV=1
          Length = 342

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 401 CVLVRAFEPEKTQECKALLAIKLR*TQVCIWINNS 297
           C+  +A++PE+T   KAL    L+    C W NN+
Sbjct: 79  CLKCKAYKPERTHHSKALGVCVLKMDHHCPWTNNT 113


>sp|P75870|YCCS_ECOLI Inner membrane protein yccS OS=Escherichia
           coli (strain K12) GN=yccS PE=1 SV=2
          Length = 717

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 350 VPYILGSFQVQ---RLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLA 520
           V YI   +Q +   R+L+   EA  RYL +ILE+  Q    +    I    A    ++LA
Sbjct: 527 VSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELA 586

Query: 521 SKVSN 535
           S VSN
Sbjct: 587 SVVSN 591
tr_hit_id Q10M30
Definition tr|Q10M30|Q10M30_ORYSJ Os03g0325500 protein OS=Oryza sativa subsp. japonica
Align length 62
Score (bit) 78.6
E-value 7.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960547|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L12, 5'
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q10M30|Q10M30_ORYSJ Os03g0325500 protein OS=Oryza sativa subs...    79   7e-18
tr|A2XG76|A2XG76_ORYSI Putative uncharacterized protein OS=Oryza...    79   1e-17
tr|A9PEQ8|A9PEQ8_POPTR Putative uncharacterized protein OS=Popul...    75   1e-16
tr|A7Q757|A7Q757_VITVI Chromosome chr5 scaffold_58, whole genome...    74   2e-16
tr|A5AGH0|A5AGH0_VITVI Putative uncharacterized protein OS=Vitis...    75   4e-16
tr|Q9FK47|Q9FK47_ARATH Transfactor-like protein OS=Arabidopsis t...    71   6e-16
tr|Q94B34|Q94B34_ARATH Transfactor-like protein OS=Arabidopsis t...    71   6e-16
tr|Q84WH5|Q84WH5_ARATH Transfactor-like protein OS=Arabidopsis t...    71   6e-16
tr|A8MSE5|A8MSE5_ARATH Uncharacterized protein At1g69580.2 OS=Ar...    73   6e-16
tr|Q9SEZ2|Q9SEZ2_ARATH Transfactor, putative; 28697-27224 (At1g6...    73   6e-16
tr|Q3E9G0|Q3E9G0_ARATH Uncharacterized protein At5g18240.5 OS=Ar...    70   6e-15
tr|Q9SQQ9|Q9SQQ9_ARATH Transfactor-like OS=Arabidopsis thaliana ...    69   1e-14
tr|B3H651|B3H651_ARATH Uncharacterized protein At3g04030.2 OS=Ar...    69   1e-14
tr|Q0DH73|Q0DH73_ORYSJ Os05g0488600 protein OS=Oryza sativa subs...    69   2e-14
tr|A2Y5Y8|A2Y5Y8_ORYSI Putative uncharacterized protein OS=Oryza...    69   2e-14
tr|Q2V3J4|Q2V3J4_ARATH Uncharacterized protein At4g13640.2 OS=Ar...    68   2e-14
tr|Q3EB15|Q3EB15_ARATH Uncharacterized protein At3g24120.2 OS=Ar...    68   4e-14
tr|Q9SVP8|Q9SVP8_ARATH Putative uncharacterized protein F18A5.30...    67   5e-14
tr|Q8LAJ7|Q8LAJ7_ARATH Transfactor, putative (Putative uncharact...    67   5e-14
tr|Q9LRN5|Q9LRN5_ARATH Similarity to transfactor OS=Arabidopsis ...    67   8e-14
tr|Q94A57|Q94A57_ARATH AT3g24120/MUJ8_3 (Transfactor, putative) ...    67   8e-14
tr|A9SRR3|A9SRR3_PHYPA Predicted protein OS=Physcomitrella paten...    69   1e-13
tr|A7QEC1|A7QEC1_VITVI Chromosome chr1 scaffold_84, whole genome...    67   1e-13
tr|A9RT15|A9RT15_PHYPA Predicted protein OS=Physcomitrella paten...    69   5e-13
tr|A9RWT7|A9RWT7_PHYPA Predicted protein OS=Physcomitrella paten...    69   7e-13
tr|A9RJW4|A9RJW4_PHYPA Predicted protein OS=Physcomitrella paten...    65   1e-12
tr|A9RS58|A9RS58_PHYPA Predicted protein (Fragment) OS=Physcomit...    63   6e-12
tr|Q8RXE4|Q8RXE4_ARATH Putative uncharacterized protein At4g1364...    67   1e-11
tr|A7PW69|A7PW69_VITVI Chromosome chr8 scaffold_34, whole genome...    65   4e-11
tr|Q0DYD6|Q0DYD6_ORYSJ Os02g0700300 protein OS=Oryza sativa subs...    54   6e-11

>tr|Q10M30|Q10M30_ORYSJ Os03g0325500 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0325500 PE=4 SV=1
          Length = 354

 Score = 78.6 bits (192), Expect(2) = 7e-18
 Identities = 39/62 (62%), Positives = 49/62 (79%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSNDCFSLA 553
           +VQR LQ+RIEAQG+YLQS+LEKAQ+TLA Q   ++GLE A+ ELS+L SKVS +C   A
Sbjct: 169 EVQRHLQLRIEAQGKYLQSVLEKAQETLAKQNAGSVGLETAKMELSELVSKVSTECLQHA 228

Query: 554 AS 559
            S
Sbjct: 229 FS 230



 Score = 36.2 bits (82), Expect(2) = 7e-18
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +1

Query: 190 VQVNDALGFQIEVQRKLHEQLEVKQ 264
           V + +AL  QIEVQR+LHEQLEV++
Sbjct: 148 VHIGEALQMQIEVQRRLHEQLEVQR 172


>tr|A2XG76|A2XG76_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11384 PE=4 SV=1
          Length = 405

 Score = 78.6 bits (192), Expect(2) = 1e-17
 Identities = 39/62 (62%), Positives = 49/62 (79%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSNDCFSLA 553
           +VQR LQ+RIEAQG+YLQS+LEKAQ+TLA Q   ++GLE A+ ELS+L SKVS +C   A
Sbjct: 220 EVQRHLQLRIEAQGKYLQSVLEKAQETLAKQNAGSVGLETAKMELSELVSKVSTECLQHA 279

Query: 554 AS 559
            S
Sbjct: 280 FS 281



 Score = 35.0 bits (79), Expect(2) = 1e-17
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 190 VQVNDALGFQIEVQRKLHEQLEVKQ 264
           V + +AL  QIEVQR++HEQLEV++
Sbjct: 199 VHIGEALQMQIEVQRRVHEQLEVQR 223


>tr|A9PEQ8|A9PEQ8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 309

 Score = 75.5 bits (184), Expect(2) = 1e-16
 Identities = 40/60 (66%), Positives = 47/60 (78%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSNDCFSLA 553
           +VQ  LQ+RIEAQG+YLQSILEKA + L  Q VA  GLEAAR ELS+LA KVSN+C  +A
Sbjct: 159 EVQHHLQLRIEAQGKYLQSILEKACKALNDQAVATAGLEAAREELSELAIKVSNECAGIA 218



 Score = 35.0 bits (79), Expect(2) = 1e-16
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +1

Query: 193 QVNDALGFQIEVQRKLHEQLEVK 261
           QV +AL  Q+EVQR+LHEQLEV+
Sbjct: 139 QVTEALRVQMEVQRRLHEQLEVQ 161


>tr|A7Q757|A7Q757_VITVI Chromosome chr5 scaffold_58, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031697001
           PE=4 SV=1
          Length = 307

 Score = 74.3 bits (181), Expect(2) = 2e-16
 Identities = 39/56 (69%), Positives = 44/56 (78%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSNDC 541
           +VQR LQ+RIEAQG+YLQSILEKA + L  Q  A  GLEAAR ELS+L  KVSNDC
Sbjct: 159 EVQRHLQLRIEAQGKYLQSILEKACKALKDQAAATAGLEAAREELSELQIKVSNDC 214



 Score = 35.4 bits (80), Expect(2) = 2e-16
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = +1

Query: 193 QVNDALGFQIEVQRKLHEQLEVKQ 264
           QV +AL  Q+EVQR+LHEQLEV++
Sbjct: 139 QVTEALRVQMEVQRRLHEQLEVQR 162


>tr|A5AGH0|A5AGH0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027098 PE=4 SV=1
          Length = 250

 Score = 75.5 bits (184), Expect(2) = 4e-16
 Identities = 40/56 (71%), Positives = 44/56 (78%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSNDC 541
           QVQR LQ+RIEAQG+YLQSILEKA + L  Q  A  GLEAAR ELS+L  KVSNDC
Sbjct: 102 QVQRHLQLRIEAQGKYLQSILEKACKALKDQAAATAGLEAAREELSELQIKVSNDC 157



 Score = 33.1 bits (74), Expect(2) = 4e-16
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 190 VQVNDALGFQIEVQRKLHEQLEV 258
           + V +AL  Q+EVQR+LHEQLEV
Sbjct: 57  LHVTEALRVQMEVQRRLHEQLEV 79


>tr|Q9FK47|Q9FK47_ARATH Transfactor-like protein OS=Arabidopsis
           thaliana GN=At5g18240 PE=4 SV=1
          Length = 402

 Score = 71.2 bits (173), Expect(2) = 6e-16
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSND 538
           +VQR LQ+RIEAQG+YLQSILEKAQ+TL  Q +   G+EA +A+LS+L SKVS D
Sbjct: 166 EVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSKVSAD 220



 Score = 37.0 bits (84), Expect(2) = 6e-16
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = +1

Query: 187 DVQVNDALGFQIEVQRKLHEQLEVKQ 264
           ++ ++DAL  QIEVQR+LHEQLEV++
Sbjct: 144 NLPISDALQMQIEVQRRLHEQLEVQR 169


>tr|Q94B34|Q94B34_ARATH Transfactor-like protein OS=Arabidopsis
           thaliana GN=MRG7.19 PE=2 SV=1
          Length = 402

 Score = 71.2 bits (173), Expect(2) = 6e-16
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSND 538
           +VQR LQ+RIEAQG+YLQSILEKAQ+TL  Q +   G+EA +A+LS+L SKVS D
Sbjct: 166 EVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSKVSAD 220



 Score = 37.0 bits (84), Expect(2) = 6e-16
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = +1

Query: 187 DVQVNDALGFQIEVQRKLHEQLEVKQ 264
           ++ ++DAL  QIEVQR+LHEQLEV++
Sbjct: 144 NLPISDALQMQIEVQRRLHEQLEVQR 169


>tr|Q84WH5|Q84WH5_ARATH Transfactor-like protein OS=Arabidopsis
           thaliana GN=At5g18240 PE=2 SV=1
          Length = 402

 Score = 71.2 bits (173), Expect(2) = 6e-16
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSND 538
           +VQR LQ+RIEAQG+YLQSILEKAQ+TL  Q +   G+EA +A+LS+L SKVS D
Sbjct: 166 EVQRHLQLRIEAQGKYLQSILEKAQETLGRQNLGAAGIEATKAQLSELVSKVSAD 220



 Score = 37.0 bits (84), Expect(2) = 6e-16
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = +1

Query: 187 DVQVNDALGFQIEVQRKLHEQLEVKQ 264
           ++ ++DAL  QIEVQR+LHEQLEV++
Sbjct: 144 NLPISDALQMQIEVQRRLHEQLEVQR 169


>tr|A8MSE5|A8MSE5_ARATH Uncharacterized protein At1g69580.2
           OS=Arabidopsis thaliana GN=At1g69580 PE=4 SV=1
          Length = 337

 Score = 73.2 bits (178), Expect(2) = 6e-16
 Identities = 38/62 (61%), Positives = 49/62 (79%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSNDCFSLA 553
           +VQR LQV+IEAQG+YLQS+L KAQQTLAG + +N+G++ AR ELS LAS V+  C S +
Sbjct: 158 EVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTELSRLASMVNRGCPSTS 217

Query: 554 AS 559
            S
Sbjct: 218 FS 219



 Score = 35.0 bits (79), Expect(2) = 6e-16
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +1

Query: 190 VQVNDALGFQIEVQRKLHEQLEVKQ 264
           +Q+ +AL  Q+EVQ+KLHEQ+EV++
Sbjct: 137 LQITEALQMQMEVQKKLHEQIEVQR 161


>tr|Q9SEZ2|Q9SEZ2_ARATH Transfactor, putative; 28697-27224
           (At1g69580) OS=Arabidopsis thaliana GN=At1g69580 PE=2
           SV=1
          Length = 332

 Score = 73.2 bits (178), Expect(2) = 6e-16
 Identities = 38/62 (61%), Positives = 49/62 (79%)
 Frame = +2

Query: 374 QVQRLLQVRIEAQGRYLQSILEKAQQTLAGQTVANIGLEAARAELSDLASKVSNDCFSLA 553
           +VQR LQV+IEAQG+YLQS+L KAQQTLAG + +N+G++ AR ELS LAS V+  C S +
Sbjct: 153 EVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSSSNLGMDFARTELSRLASMVNRGCPSTS 212

Query: 554 AS 559
            S
Sbjct: 213 FS 214



 Score = 35.0 bits (79), Expect(2) = 6e-16
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +1

Query: 190 VQVNDALGFQIEVQRKLHEQLEVKQ 264
           +Q+ +AL  Q+EVQ+KLHEQ+EV++
Sbjct: 132 LQITEALQMQMEVQKKLHEQIEVQR 156