DK960556
Clone id TST39A01NGRL0007_L21
Library
Length 628
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_L21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGTGTCTCCGTCTCAAGCTCAAGTTTCAGCAGATTCAAGGTTTGTGGGTTTTCAATGGA
GGAGCAGAAAATTGAGAAGAAGCAGGAGGAAATCCCTAAAGTAGTGGAGGATGTGAAGGA
AGAGGTAGTGGCAGCAGCTGCTGCAGAGGGAAAAGAAGAAGCGAAGAAGCCTATCAATGA
AGAAGAAGCGAAGAAGGTAGAGGAAGAGGCGGAAACGGAGGAGAAAGCCCCCCCCAGTGA
GTCCCTTACAGAAACCCCCTCTTTCAAAGAGGAGAGCTATAGCGTTGGGGACTTAACCGA
GGTAGAGAAGAAGGCCCTGGAAGCCTTCAGACTGAAAGTGGAGGACGCCATTAAGAGCAA
GAGCATTCTTAAGAAGCCTAAGAAGAAAGTGGAAGAGAAGGTGGTTGCGGTTGCAGAATC
CCCTGCCTCTGCTGAAGCTGAGACCGAGACACCTGTTTCAGTCGAAACAGAGTCCCGTGC
AATTGAAGAAGTAGAGGCTGAAGAGACTGAAGTTCCTGCTGTCACTGAAGAACCCGCTGC
TCCTCCACCTGCTGAAGAAGCCCCCATTGACTCTACTGATTCCGTCGTCACCGAGAAAAG
AGAGATCTTAATTGAAGAACCCCCTGTT
■■Homology search results ■■ -
sp_hit_id Q94C59
Definition sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana
Align length 36
Score (bit) 33.5
E-value 0.92
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960556|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L21, 5'
(628 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana GN=PATL... 33 0.92
sp|Q8C341|CA009_MOUSE Protein C1orf9 homolog OS=Mus musculus PE=... 33 1.2
sp|Q9UBS9|CA009_HUMAN Protein C1orf9 OS=Homo sapiens GN=C1orf9 P... 33 1.2

>sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana GN=PATL4
PE=1 SV=2
Length = 540

Score = 33.5 bits (75), Expect = 0.92
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2

Query: 239 ESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVED 346
E + ++ SFKEES DL E EKKAL + K+E+
Sbjct: 46 EGVEKSASFKEESDFFADLKESEKKALSDLKSKLEE 81


>sp|Q8C341|CA009_MOUSE Protein C1orf9 homolog OS=Mus musculus PE=2
SV=3
Length = 1250

Score = 33.1 bits (74), Expect = 1.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Frame = +2

Query: 230 PPSESLTETPSFKEESYSVG------------DLTEVEKKALEAFRLKVED 346
PPSE +ET S EESY G T+ EK+AL+ R KV+D
Sbjct: 1157 PPSEGSSETSSQSEESYFCGISACTSLCNGQTQKTKTEKRALKRRRSKVQD 1207


>sp|Q9UBS9|CA009_HUMAN Protein C1orf9 OS=Homo sapiens GN=C1orf9 PE=2
SV=1
Length = 1254

Score = 33.1 bits (74), Expect = 1.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Frame = +2

Query: 230 PPSESLTETPSFKEESYSVG------------DLTEVEKKALEAFRLKVED 346
PPSE +ET S EESY G T+ EK+AL+ R KV+D
Sbjct: 1161 PPSEGSSETSSQSEESYFCGISACTSLCNGQSQKTKTEKRALKRRRSKVQD 1211


tr_hit_id A7QLX0
Definition tr|A7QLX0|A7QLX0_VITVI Chromosome chr18 scaffold_122, whole genome shotgun sequence OS=Vitis vinifera
Align length 36
Score (bit) 39.7
E-value 0.15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960556|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_L21, 5'
(628 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QLX0|A7QLX0_VITVI Chromosome chr18 scaffold_122, whole geno... 40 0.15
tr|A5ASS1|A5ASS1_VITVI Putative uncharacterized protein OS=Vitis... 40 0.15
tr|A7PKK5|A7PKK5_VITVI Chromosome chr7 scaffold_20, whole genome... 37 1.3
tr|B6TB19|B6TB19_MAIZE Patellin-5 OS=Zea mays PE=2 SV=1 35 4.8

>tr|A7QLX0|A7QLX0_VITVI Chromosome chr18 scaffold_122, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001819001
PE=4 SV=1
Length = 606

Score = 39.7 bits (91), Expect = 0.15
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2

Query: 239 ESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVED 346
E +TE+ SFKEES VGDL E ++KALE ++ V +
Sbjct: 78 EKMTESVSFKEESNVVGDLPESQRKALEELKVLVRE 113


>tr|A5ASS1|A5ASS1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_013163 PE=4 SV=1
Length = 595

Score = 39.7 bits (91), Expect = 0.15
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2

Query: 239 ESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVED 346
E +TE+ SFKEES VGDL E ++KALE ++ V +
Sbjct: 78 EKMTESVSFKEESNVVGDLPESQRKALEELKVLVRE 113


>tr|A7PKK5|A7PKK5_VITVI Chromosome chr7 scaffold_20, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019216001
PE=4 SV=1
Length = 452

Score = 36.6 bits (83), Expect = 1.3
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2

Query: 239 ESLTETPSFKEESYSVGDLTEVEKKALEAFRL--KVED 346
E + ++ SFKEES V DL E EKKALE + KV+D
Sbjct: 72 EKIPQSDSFKEESTRVSDLPETEKKALEELKQLEKVDD 109


>tr|B6TB19|B6TB19_MAIZE Patellin-5 OS=Zea mays PE=2 SV=1
Length = 520

Score = 34.7 bits (78), Expect = 4.8
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +2

Query: 230 PPSESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVE 343
P E T+ SF+EES + DL E E+KAL R KVE
Sbjct: 18 PAKEVSTKQASFREESNFLDDLKESERKALAELRDKVE 55