DK960558 |
Clone id |
TST39A01NGRL0007_L23 |
Library |
TST39 |
Length |
704 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_L23. 5' end sequence. |
Accession |
DK960558 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3375Contig1 |
Sequence |
GCCACTGGAAAGGCGTCGTTTGAGTGAAGTAGTATAGTAGGTCTCGTCGCCGTTCTCAAG CAGCCATGGATTCCAAGATTGCGCAGACGCAGGCCTTGTTCGAGAAATTCAAGGGTGCTT ACGCCAAGAAGGATTTCGAGACAAGCTGCACGTTGCTATCTCAGCTGAAGGTCAAACTCA CAGAGTTTCAAAGCCTTCCCCCTTTATTCAGGCAAACGTCAACGGCAGTAGCAGAACTAC AGCTTGCGAGGAGCATATTTGAGCATGCAGTGGTTCTAAGTATTATGACAGAGGACCAAG AAGCATTTGAAAGACATTTTTTACAGCTAAAGCCCTATTATAGCGATACCAGAAGTGTGA TTCCACCATCAGCAGAGGAGTATCCTATTCTTGGGCTCAATCTTCTGAGATTGCTAGTGC AAAACCGTATTGCTGAGTTCCATACAGAGCTGGAGCTTCTCTCTCCCGCCACCCTGGAAA ACCCTTGTATAAAGTATGCAGTTGAGCTGGAGCAGTCTTTCATGGAGGGTGCATATAACA GAGTTTTAAGTGCACGGCAGTCTGTTCCTCATGAAACCTATAAGTACTTTATGGATCTTT TGGCCAAAACTGTGAGAGATGAGATAGCAGGCTGCAGCGAGAAGGTGTATGATTATCTTT CCCTCTCGGATGCAAAGAAGATGTGGATGTTTTCTACTGATCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RE15 |
Definition |
sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii |
Align length |
204 |
Score (bit) |
135.0 |
E-value |
2.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960558|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_L23, 5' (704 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subun... 135 2e-31 sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subun... 135 2e-31 sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subun... 134 5e-31 sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subun... 134 5e-31 sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulat... 133 8e-31 sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS... 106 1e-22 sp|P32496|RPN12_YEAST 26S proteasome regulatory subunit RPN12 OS... 88 5e-17 sp|Q23449|PSMD8_CAEEL 26S proteasome non-ATPase regulatory subun... 80 1e-14 sp|Q99TD3|ISDH_STAAN Iron-regulated surface determinant protein ... 34 0.67 sp|Q931P4|ISDH_STAAM Iron-regulated surface determinant protein ... 34 0.67 sp|Q5HF43|ISDH_STAAC Iron-regulated surface determinant protein ... 34 0.67 sp|Q2FXJ2|ISDH_STAA8 Iron-regulated surface determinant protein ... 34 0.67 sp|Q2FG07|ISDH_STAA3 Iron-regulated surface determinant protein ... 34 0.67 sp|A4QNR8|LENG8_DANRE Leukocyte receptor cluster member 8 homolo... 33 1.1 sp|Q8NW39|ISDH_STAAW Iron-regulated surface determinant protein ... 33 1.5 sp|Q6G8J7|ISDH_STAAS Iron-regulated surface determinant protein ... 33 1.5 sp|Q2YTF7|ISDH_STAAB Iron-regulated surface determinant protein ... 33 1.5 sp|Q87RT6|THII_VIBPA Thiamine biosynthesis protein thiI OS=Vibri... 32 2.6 sp|P56166|MPA53_PHAAQ Major pollen allergen Pha a 5.3 OS=Phalari... 32 2.6 sp|Q7MN44|THII_VIBVY Thiamine biosynthesis protein thiI OS=Vibri... 32 3.3 sp|Q8DFA8|THII_VIBVU Thiamine biosynthesis protein thiI OS=Vibri... 32 3.3 sp|Q6GHV7|ISDB_STAAR Iron-regulated surface determinant protein ... 32 3.3 sp|Q2YX96|ISDB_STAAB Iron-regulated surface determinant protein ... 32 3.3 sp|P47521|Y279_MYCGE Uncharacterized protein MG279 OS=Mycoplasma... 31 7.4 sp|Q8NX66|ISDB_STAAW Iron-regulated surface determinant protein ... 31 7.4 sp|P0C7J5|ISDB_STAAT Iron-regulated surface determinant protein ... 31 7.4 sp|Q7A656|ISDB_STAAN Iron-regulated surface determinant protein ... 31 7.4 sp|Q99UX5|ISDB_STAAM Iron-regulated surface determinant protein ... 31 7.4 sp|A6QG30|ISDB_STAAE Iron-regulated surface determinant protein ... 31 7.4 sp|Q5HGV5|ISDB_STAAC Iron-regulated surface determinant protein ... 31 7.4
>sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1 Length = 257
Score = 135 bits (340), Expect = 2e-31 Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 3/204 (1%) Frame = +3
Query: 96 LFEKFKGAYAKKDFETS-C-TLLSQLKVKLTEFQSLPPLFRQTSTAVAELQLARSIFEHA 269 ++E+ KG + +K S C L +LK+ L E LP T +L LAR I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58
Query: 270 VVLSIMTEDQEAFERHFLQLKPYYSDTRSVIPPSAEEYPIXXXXXXXXXVQNRIAEFHTE 449 SI+ +D +FER+ QLK YY D + +P SA + + QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118
Query: 450 LELLSPATLE-NPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKYFMDLLAKTVRDEI 626 LE L ++ N IK+ V LEQ MEG+YN+V A+ ++P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYAFFIDILLDTIRDEI 178
Query: 627 AGCSEKVYDYLSLSDAKKMWMFST 698 AGC EK Y+ + ++A ++ F+T Sbjct: 179 AGCIEKAYEKILFTEATRILFFNT 202
>sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1 Length = 257
Score = 135 bits (340), Expect = 2e-31 Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 3/204 (1%) Frame = +3
Query: 96 LFEKFKGAYAKKDFETS-C-TLLSQLKVKLTEFQSLPPLFRQTSTAVAELQLARSIFEHA 269 ++E+ KG + +K S C L +LK+ L E LP T +L LAR I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58
Query: 270 VVLSIMTEDQEAFERHFLQLKPYYSDTRSVIPPSAEEYPIXXXXXXXXXVQNRIAEFHTE 449 SI+ +D +FER+ QLK YY D + +P SA + + QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118
Query: 450 LELLSPATLE-NPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKYFMDLLAKTVRDEI 626 LE L ++ N IK+ V LEQ MEG+YN+V A+ ++P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEI 178
Query: 627 AGCSEKVYDYLSLSDAKKMWMFST 698 AGC EK Y+ + ++A ++ F+T Sbjct: 179 AGCIEKAYEKILFTEATRILFFNT 202
>sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1 Length = 257
Score = 134 bits (337), Expect = 5e-31 Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 3/204 (1%) Frame = +3
Query: 96 LFEKFKGAYAKKDFETS-C-TLLSQLKVKLTEFQSLPPLFRQTSTAVAELQLARSIFEHA 269 ++E+ K + +K+ S C L +LK+ L E LP T +L LAR I E Sbjct: 1 MYEQLKDEWNRKNPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDILEIG 58
Query: 270 VVLSIMTEDQEAFERHFLQLKPYYSDTRSVIPPSAEEYPIXXXXXXXXXVQNRIAEFHTE 449 SI+ +D +FER+ QLK YY D + +P SA + + QNR+AEFHTE Sbjct: 59 AQWSILCKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118
Query: 450 LELLSPATLE-NPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKYFMDLLAKTVRDEI 626 LE L ++ N IK+ V LEQ MEG+YN+V A+ ++P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEI 178
Query: 627 AGCSEKVYDYLSLSDAKKMWMFST 698 AGC EK Y+ + ++A ++ FST Sbjct: 179 AGCIEKAYEKILFAEATRILFFST 202
>sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2 Length = 257
Score = 134 bits (337), Expect = 5e-31 Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 3/204 (1%) Frame = +3
Query: 96 LFEKFKGAYAKKDFETS-C-TLLSQLKVKLTEFQSLPPLFRQTSTAVAELQLARSIFEHA 269 ++E+ KG + +K S C L +LK+ L E LP T +L LAR I E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTT--GTKLTKQQLILARDIQEIG 58
Query: 270 VVLSIMTEDQEAFERHFLQLKPYYSDTRSVIPPSAEEYPIXXXXXXXXXVQNRIAEFHTE 449 SI+ +D +FER+ QLK YY D + +P SA + + QNR+AEFHTE Sbjct: 59 AQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTE 118
Query: 450 LELLSPATLE-NPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKYFMDLLAKTVRDEI 626 LE L ++ N IK+ V LEQ MEG+YN+V A+ ++P E+Y +F+D+L T+RDEI Sbjct: 119 LERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEI 178
Query: 627 AGCSEKVYDYLSLSDAKKMWMFST 698 AGC EK Y+ + ++A ++ F+T Sbjct: 179 AGCIEKAYEKILFTEATRILFFNT 202
>sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2 Length = 263
Score = 133 bits (335), Expect = 8e-31 Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 1/209 (0%) Frame = +3
Query: 72 SKIAQTQALFEKFKGAYAKKDFETSCTLLSQLKVKLTEFQSLPPLFRQTSTAVA-ELQLA 248 S I Q F+K + K T +L QLK+ T P S V +L LA Sbjct: 4 SSIEQNLNNFKKLVAGNSDKAQITP--VLVQLKLAATIHLEKPTSLSNVSDKVKKDLVLA 61
Query: 249 RSIFEHAVVLSIMTEDQEAFERHFLQLKPYYSDTRSVIPPSAEEYPIXXXXXXXXXVQNR 428 R I E + SI +D ++FER F QLK YY D +S+I PS EY I +++ Sbjct: 62 REILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSIIAPSTLEYQIIGLNLMRLLAKHK 121
Query: 429 IAEFHTELELLSPATLENPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKYFMDLLAK 608 +EFH+E+EL+ L+N IK+ + +E+S EG+YN+++ +R VP E Y+ F+D+LA Sbjct: 122 TSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSGVPSEYYQVFLDILAD 181
Query: 609 TVRDEIAGCSEKVYDYLSLSDAKKMWMFS 695 +++++IA CSEK + LSL DA+K+ +F+ Sbjct: 182 SIKEDIANCSEKSFKTLSLKDAEKVLLFN 210
>sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1 Length = 270
Score = 106 bits (265), Expect = 1e-22 Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 2/190 (1%) Frame = +3
Query: 120 YAKKDFETSCTLLSQLKVKLTEFQSLPPLFRQTSTAVAELQLARSIFEHAVVLSIMTEDQ 299 Y +KD+ L +LKV+L + LF TS + AR++FE+ V++SI T D Sbjct: 13 YDRKDWNACKKELLKLKVELAKQN----LFVPTSDK-EKASFARNVFEYGVLVSIQTCDI 67
Query: 300 EAFERHFLQLKPYYSDTRSVIPPSAEEYPIXXXXXXXXXVQNRIAEFHTELELLSPATL- 476 E+F R+ Q+ P+Y D+ + PS+ + +NRIAEFHT LE + +L Sbjct: 68 ESFARYASQVIPFYHDS---LVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLF 124
Query: 477 -ENPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKYFMDLLAKTVRDEIAGCSEKVYD 653 +P +++ + LEQ+ MEGA+++V S +S + YFM ++ VR+EIA C+EKVY Sbjct: 125 ERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYS 184
Query: 654 YLSLSDAKKM 683 + LS+A + Sbjct: 185 EIPLSNATSL 194
>sp|P32496|RPN12_YEAST 26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3 Length = 274
Score = 87.8 bits (216), Expect = 5e-17 Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 6/202 (2%) Frame = +3
Query: 117 AYAKKDFETSCTLLSQLKVKLTEFQSL-PPLFRQTSTAVAELQLARSIFEHAVVLSIMTE 293 A+ D+ LL +K++L + L P L Q + +L + + I E + SI T Sbjct: 14 AFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTF 73
Query: 294 DQEAFERHFLQLKPYYSDTRSVIPPSAEEYPIXXXXXXXXXVQNRIAEFHTELELLSPAT 473 + ++FE +F QLKPYY + S ++ + QN +FH+EL+ L Sbjct: 74 NFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHI 133
Query: 474 L---ENPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKY--FMDLLAKTVRDEIAGCS 638 ++ + Y ++L++ MEG+Y + QS ++ F D+L +RDEIA + Sbjct: 134 KNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNT 193
Query: 639 EKVYDYLSLSDAKKMWMFSTDQ 704 E YD+L LS+ K + F+ ++ Sbjct: 194 ELSYDFLPLSNIKALLFFNNEK 215
>sp|Q23449|PSMD8_CAEEL 26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=2 SV=1 Length = 250
Score = 79.7 bits (195), Expect = 1e-14 Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Frame = +3
Query: 246 ARSIFEHAVVLSIMTEDQEAFERHFLQLKPYYSDTRSVIPPSAE-EYPIXXXXXXXXXVQ 422 ++ ++E +V+L+I+ D E F+ + Q+ YY+ + P ++E ++ + Sbjct: 48 SKDLYEISVLLAILKHDFETFDDYINQMHTYYT----MAPENSENKHLMTGLHLMFLLAA 103
Query: 423 NRIAEFHTELELL-SPATLENPCIKYAVELEQSFMEGAYNRVLSARQSVPHETYKYFMDL 599 NR+++FH LE + N I V +EQS MEGAYN+V+ +++P Y F+ + Sbjct: 104 NRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRI 163
Query: 600 LAKTVRDEIAGCSEKVYDYLSLSDAKKMWMFSTDQ 704 + T+R EIA EK + L+ DA M +F D+ Sbjct: 164 MLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDE 198
>sp|Q99TD3|ISDH_STAAN Iron-regulated surface determinant protein H OS=Staphylococcus aureus (strain N315) GN=isdH PE=3 SV=1 Length = 891
Score = 34.3 bits (77), Expect = 0.67 Identities = 28/87 (32%), Positives = 45/87 (51%) Frame = +3
Query: 90 QALFEKFKGAYAKKDFETSCTLLSQLKVKLTEFQSLPPLFRQTSTAVAELQLARSIFEHA 269 + L EK+K Y KK +T L Q+K +TEF+++ P T+ + +LQ A H Sbjct: 502 EKLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTP----TNDQLTDLQEA-----HF 552
Query: 270 VVLSIMTEDQEAFERHFLQLKPYYSDT 350 VV E+ E+ F++ P+Y+ T Sbjct: 553 VVFE-SEENSESVMDGFVE-HPFYTAT 577
>sp|Q931P4|ISDH_STAAM Iron-regulated surface determinant protein H OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=isdH PE=1 SV=1 Length = 891
Score = 34.3 bits (77), Expect = 0.67 Identities = 28/87 (32%), Positives = 45/87 (51%) Frame = +3
Query: 90 QALFEKFKGAYAKKDFETSCTLLSQLKVKLTEFQSLPPLFRQTSTAVAELQLARSIFEHA 269 + L EK+K Y KK +T L Q+K +TEF+++ P T+ + +LQ A H Sbjct: 502 EKLPEKYKAEYKKKLDQTRVELADQVKSAVTEFENVTP----TNDQLTDLQEA-----HF 552
Query: 270 VVLSIMTEDQEAFERHFLQLKPYYSDT 350 VV E+ E+ F++ P+Y+ T Sbjct: 553 VVFE-SEENSESVMDGFVE-HPFYTAT 577
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LPE5 |
Definition |
tr|B8LPE5|B8LPE5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
213 |
Score (bit) |
304.0 |
E-value |
3.0e-81 |
Report |
|