NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960560
Clone id TST39A01NGRL0007_M01
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_M01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGTGAGAGCCTCCCATCTGTGAGCTTTGTGCGTCGCTAGCGCCTGTTTCCTCTCCAGTC
CGCAAAACCTTCATGGCTCCCAAACGCAGAGGAAGGCCCCGCAAGACCGATAAACCTGCT
GATGATAATGTGGAGAAGCAGGAGACTTCTGTGTCTGCAGAGGCCGCCGAAGCTGCCGAA
GAAGTGGTAGAAGAAGAAGAGAAAGCGGAAACGGAGCCCAGCCCGAAGAAGAGTAAAGTG
GAAGAGAAGAAGAAGAGGGGTCGCAAGCCAAAAGCTACCTCGAAGAAGGTTGCTGCTAAG
AAGTCTGCGGATGATGATGATGATGCAAAGGACGCCAGTGAGGACGAAGAGGCCGAGGAG
GGAGTGGAGGAGGAAGTTCCAGCCGATGCTATGTCTCAGAAAGTGGTTATCATTGAGGCC
AGCAAGGAGTGCAATTGTTTCAAGACTCGGGCTGCCAAAGTTCATGCAGGTCTTACTAAA
GCTATTCCTGGTATTGAAGTGCAAATCAATCCAGACAAGCCTAGAAAAGGTTGCTTTGAG
GTGCGTGGCAAGGATGGCAAGATTTACATGTCTCTGCTTGGATTGCCAAGGCCTTTTACA
AAGCTGAAGAATGTGGACATGGACAAGGCTGTTGAGG
■■Homology search results ■■ -
sp_hit_id Q4R5Y4
Definition sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis
Align length 85
Score (bit) 38.5
E-value 0.03
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960560|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M01, 5'
         (637 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis GN=S...    39   0.030
sp|Q8IZQ5|SELH_HUMAN Selenoprotein H OS=Homo sapiens GN=SELH PE=...    39   0.030
sp|Q3UQA7|SELH_MOUSE Selenoprotein H OS=Mus musculus GN=Selh PE=...    37   0.066
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch...    30   8.1  

>sp|Q4R5Y4|SELH_MACFA Selenoprotein H OS=Macaca fascicularis GN=SELH
           PE=2 SV=2
          Length = 122

 Score = 38.5 bits (88), Expect = 0.030
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = +1

Query: 391 MSQKVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVR--GKDGKI 564
           M +  V+IE       +   AA +   L    P + V++NP KPR+G FEV     DG  
Sbjct: 31  MEETTVVIEHCTSURVYGXNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS 90

Query: 565 YMSLLGLPR-PFTKLKNVDMDKAVE 636
                G+ + P  KLK  +  + VE
Sbjct: 91  AELWTGIKKGPPRKLKFPEPQEVVE 115


>sp|Q8IZQ5|SELH_HUMAN Selenoprotein H OS=Homo sapiens GN=SELH PE=1
           SV=2
          Length = 122

 Score = 38.5 bits (88), Expect = 0.030
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = +1

Query: 391 MSQKVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVR--GKDGKI 564
           M +  V+IE       +   AA +   L    P + V++NP KPR+G FEV     DG  
Sbjct: 31  MEEATVVIEHCTSURVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGSS 90

Query: 565 YMSLLGLPR-PFTKLKNVDMDKAVE 636
                G+ + P  KLK  +  + VE
Sbjct: 91  AELWTGIKKGPPRKLKFPEPQEVVE 115


>sp|Q3UQA7|SELH_MOUSE Selenoprotein H OS=Mus musculus GN=Selh PE=2
           SV=2
          Length = 116

 Score = 37.4 bits (85), Expect = 0.066
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 406 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEV 543
           V+IE       +   AA +   L    P + VQ+NP KPR+G FEV
Sbjct: 30  VVIEHCTSURVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEV 75


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4
           OS=Schizosaccharomyces pombe GN=orc4 PE=1 SV=1
          Length = 972

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 34  SLAPVSSPVRKTFMAPKRRGRPRK-TDKPADDNVE 135
           +LAP S    +   AP+RRGRPRK   KP D+  E
Sbjct: 85  TLAPPSPSPLRLNEAPRRRGRPRKYPPKPIDEGSE 119
tr_hit_id Q53NN8
Definition tr|Q53NN8|Q53NN8_ORYSJ Os11g0704000 protein OS=Oryza sativa subsp. japonica
Align length 79
Score (bit) 94.4
E-value 5.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960560|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M01, 5'
         (637 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q53NN8|Q53NN8_ORYSJ Os11g0704000 protein OS=Oryza sativa subs...    94   5e-18
tr|A9NQ13|A9NQ13_PICSI Putative uncharacterized protein OS=Picea...    94   5e-18
tr|A5BYV8|A5BYV8_VITVI Putative uncharacterized protein OS=Vitis...    94   9e-18
tr|A2ZH16|A2ZH16_ORYSI Putative uncharacterized protein OS=Oryza...    94   9e-18
tr|A8JGP7|A8JGP7_CHLRE Selenoprotein H OS=Chlamydomonas reinhard...    93   1e-17
tr|A7P4Z5|A7P4Z5_VITVI Chromosome chr4 scaffold_6, whole genome ...    92   3e-17
tr|Q9ZQ24|Q9ZQ24_ARATH Expressed protein (Putative uncharacteriz...    91   8e-17
tr|Q8W465|Q8W465_ARATH Putative uncharacterized protein At4g3136...    90   1e-16
tr|B6TEF3|B6TEF3_MAIZE SelT/selW/selH selenoprotein domain conta...    89   3e-16
tr|B6TCP6|B6TCP6_MAIZE SelT/selW/selH selenoprotein domain conta...    89   3e-16
tr|A9TLP6|A9TLP6_PHYPA Predicted protein (Fragment) OS=Physcomit...    86   2e-15
tr|A3B1W6|A3B1W6_ORYSJ Putative uncharacterized protein OS=Oryza...    70   1e-10
tr|A2Y2E9|A2Y2E9_ORYSI Putative uncharacterized protein OS=Oryza...    70   1e-10
tr|Q0DJN2|Q0DJN2_ORYSJ Os05g0250500 protein OS=Oryza sativa subs...    69   2e-10
tr|A9V7D7|A9V7D7_MONBE Predicted protein OS=Monosiga brevicollis...    61   5e-08
tr|O49585|O49585_ARATH Putative uncharacterized protein AT4g3136...    54   1e-05
tr|B7FZD4|B7FZD4_PHATR Predicted protein OS=Phaeodactylum tricor...    41   0.054
tr|A9VDK5|A9VDK5_MONBE Predicted protein OS=Monosiga brevicollis...    36   1.7  
tr|B3RYG8|B3RYG8_TRIAD Putative uncharacterized protein OS=Trich...    36   2.3  

>tr|Q53NN8|Q53NN8_ORYSJ Os11g0704000 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0704000 PE=4 SV=1
          Length = 164

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 38/79 (48%), Positives = 60/79 (75%)
 Frame = +1

Query: 400 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 579
           K +++EA  +C  FK RAAKV   L  ++PG+ V INP+KPR+GC E+R + G++++SLL
Sbjct: 79  KRIVVEACTQCRQFKIRAAKVKEDLESSVPGVSVVINPEKPRRGCLEIREEGGEVFISLL 138

Query: 580 GLPRPFTKLKNVDMDKAVE 636
            +PRPFT++K +DMD+ ++
Sbjct: 139 NMPRPFTEMKKLDMDEVIK 157


>tr|A9NQ13|A9NQ13_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 172

 Score = 94.4 bits (233), Expect = 5e-18
 Identities = 41/76 (53%), Positives = 56/76 (73%)
 Frame = +1

Query: 406 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGL 585
           +I+E  K+C CFK RA+KV   L  AI  +EV+INP+KPR+GCFE+R  +G I++SL  +
Sbjct: 89  IIVEHCKQCQCFKVRASKVEKELKGAIHDVEVKINPEKPRRGCFEIRDGEGNIFLSLQNM 148

Query: 586 PRPFTKLKNVDMDKAV 633
           PRPFTKLK  D+D  +
Sbjct: 149 PRPFTKLKQWDLDGTI 164


>tr|A5BYV8|A5BYV8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008125 PE=4 SV=1
          Length = 154

 Score = 93.6 bits (231), Expect = 9e-18
 Identities = 41/78 (52%), Positives = 57/78 (73%)
 Frame = +1

Query: 400 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 579
           K ++IE  K+CN FKTRA +V  GL K + GI V +NP+KPR+GCFE+R + G+ Y+SLL
Sbjct: 69  KTIVIEHCKQCNSFKTRATQVKDGLEKGVLGITVVVNPEKPRRGCFEIREEGGEKYISLL 128

Query: 580 GLPRPFTKLKNVDMDKAV 633
            + RPF  +K +DMDK +
Sbjct: 129 DMKRPFAPMKALDMDKVI 146


>tr|A2ZH16|A2ZH16_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37072 PE=4 SV=1
          Length = 164

 Score = 93.6 bits (231), Expect = 9e-18
 Identities = 38/79 (48%), Positives = 59/79 (74%)
 Frame = +1

Query: 400 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 579
           K +++EA  +C  FK RAAKV   L  ++PG+ V INP+KPR+GC E+R + G++++SLL
Sbjct: 79  KRIVVEACTQCRQFKIRAAKVKEDLESSVPGVSVVINPEKPRRGCLEIREEGGEVFISLL 138

Query: 580 GLPRPFTKLKNVDMDKAVE 636
            +PRPFT +K +DMD+ ++
Sbjct: 139 NMPRPFTAMKKLDMDEVIK 157


>tr|A8JGP7|A8JGP7_CHLRE Selenoprotein H OS=Chlamydomonas reinhardtii
           GN=SelH PE=4 SV=2
          Length = 128

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 42/77 (54%), Positives = 54/77 (70%)
 Frame = +1

Query: 406 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGL 585
           ++IEA K    FKTRA K+   + +  PG  V +NPDKPRKGCFEVRG  GK ++SLL +
Sbjct: 44  IVIEACKSUGAFKTRATKLEKLIKEGAPGTSVSVNPDKPRKGCFEVRGPGGKTFVSLLDM 103

Query: 586 PRPFTKLKNVDMDKAVE 636
           PRPFTKLK +D++   E
Sbjct: 104 PRPFTKLKALDVEALAE 120


>tr|A7P4Z5|A7P4Z5_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032342001
           PE=4 SV=1
          Length = 154

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 40/78 (51%), Positives = 57/78 (73%)
 Frame = +1

Query: 400 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 579
           K ++IE  K+CN FKTRA +V  GL K + GI V +NP+KPR+GCFE+R + G+ ++SLL
Sbjct: 69  KTIVIEHCKQCNSFKTRATQVKDGLEKGVLGITVVVNPEKPRRGCFEIREEGGEKFISLL 128

Query: 580 GLPRPFTKLKNVDMDKAV 633
            + RPF  +K +DMDK +
Sbjct: 129 DMKRPFAPMKALDMDKVI 146


>tr|Q9ZQ24|Q9ZQ24_ARATH Expressed protein (Putative uncharacterized
           protein) (Putative uncharacterized protein
           At2g24440/T28I24.17) OS=Arabidopsis thaliana
           GN=At2g24440/T28I24.17 PE=2 SV=1
          Length = 183

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 38/79 (48%), Positives = 59/79 (74%)
 Frame = +1

Query: 397 QKVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSL 576
           +K ++IE  K+C  FK RA +V  GL +A+PGI V +NPDKPR+GCFE+R + G+ ++SL
Sbjct: 97  KKKIVIEHCKQCKSFKERANEVKEGLEEAVPGIIVTVNPDKPRRGCFEIREEGGETFISL 156

Query: 577 LGLPRPFTKLKNVDMDKAV 633
           L + RPFT +K ++M++ +
Sbjct: 157 LAMKRPFTPMKELNMEEVI 175


>tr|Q8W465|Q8W465_ARATH Putative uncharacterized protein At4g31360;
           F8F16.180 (Putative uncharacterized protein At4g31360)
           OS=Arabidopsis thaliana GN=At4g31360/F8F16.180 PE=2 SV=1
          Length = 186

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 37/77 (48%), Positives = 57/77 (74%)
 Frame = +1

Query: 406 VIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLLGL 585
           ++IE  K+CN FKTRA +V   L  A+PG+ V +NP+KPR+GCFE+R + G+ ++SLL +
Sbjct: 103 IVIEHCKQCNAFKTRAIQVKEALEGAVPGVTVSLNPEKPRRGCFEIREEGGQTFISLLEM 162

Query: 586 PRPFTKLKNVDMDKAVE 636
            RPF  +K +DM++ +E
Sbjct: 163 KRPFAPMKALDMEEVIE 179


>tr|B6TEF3|B6TEF3_MAIZE SelT/selW/selH selenoprotein domain
           containing protein OS=Zea mays PE=2 SV=1
          Length = 209

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 39/79 (49%), Positives = 55/79 (69%)
 Frame = +1

Query: 400 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 579
           K VI+EA  +C  FK RA KV   L   + G+ V INP KPR+GC E+R + G++++SLL
Sbjct: 124 KRVIVEACTQCRQFKIRAQKVKEDLESYVSGVSVIINPQKPRRGCLEIREEGGEVFISLL 183

Query: 580 GLPRPFTKLKNVDMDKAVE 636
            +PRPFT +K +DMDK ++
Sbjct: 184 NMPRPFTPMKKLDMDKVIK 202


>tr|B6TCP6|B6TCP6_MAIZE SelT/selW/selH selenoprotein domain
           containing protein OS=Zea mays PE=2 SV=1
          Length = 183

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 39/79 (49%), Positives = 55/79 (69%)
 Frame = +1

Query: 400 KVVIIEASKECNCFKTRAAKVHAGLTKAIPGIEVQINPDKPRKGCFEVRGKDGKIYMSLL 579
           K VI+EA  +C  FK RA KV   L   + G+ V INP KPR+GC E+R + G++++SLL
Sbjct: 98  KRVIVEACTQCRQFKIRAQKVKEDLESYVSGVSVIINPQKPRRGCLEIREEGGEVFISLL 157

Query: 580 GLPRPFTKLKNVDMDKAVE 636
            +PRPFT +K +DMDK ++
Sbjct: 158 NMPRPFTPMKKLDMDKVIK 176