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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960571
Clone id TST39A01NGRL0007_M12
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_M12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCGGCTTCAACTAACTTACGGCTGCTCGTCTCGCACGTGGGCGCTTCTTGAACGCAGGT
CTTACTCTCTTTCAAGGTCTTCTTCTATTTCGACCTCCCCGGTCGGCTCTCGTTCTTGAA
GAACTCTCAATTCGGCTCTGCAGAGATCAATGGTGGTCCACCAGCTATGGCGGTTTCCAA
GGGGAGCTAATGATCTCCAGTCTATGCTTCAAGAAAGCGCATAAGAGGCAGAGATCCCAG
GTCTGGATCAGCTCAGCATTGAGGAATTAGGTCATCTGAAAGATTTGATTTTTATGTATC
ATACACATGTAGTCGCCCCCGATCAAAGTTGCTCCATGGTGATTCAACGCATAAAAGCCC
CTGCAGAAGTGGTTTGGTCTGTCGTGCGACGCTTCGACAACCCACAGGCTTACAAGCACT
TTATTAGCAGCTGTTTCATGCAAGGTGATGGTCAAGTGGGCAGCACTCGAGAGGTAAGAG
TAGTTTCTGGTCTTCCGGCTGCGAGCAGTACAGAGAGGCTCGAAGTTTTAGATG
■■Homology search results ■■ -
sp_hit_id O49065
Definition sp|O49065|RAP_TAROF Root allergen protein OS=Taraxacum officinale
Align length 65
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960571|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M12, 5'
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O49065|RAP_TAROF Root allergen protein OS=Taraxacum officinal...    31   4.3  
sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=...    30   5.6  
sp|Q68CR7|LRC66_HUMAN Leucine-rich repeat-containing protein 66 ...    30   7.3  

>sp|O49065|RAP_TAROF Root allergen protein OS=Taraxacum officinale
           PE=1 SV=1
          Length = 157

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 357 APAEVVWSVVRRFDN------PQAYKHFISSCFMQGDGQVGSTREVRVVSGLPAASSTER 518
           +P+ +  + V  FD       P+ YK   +   ++GDG VG+ + +    G+P  SS  +
Sbjct: 13  SPSNIFKAFVIDFDTIAPKAEPETYKSIKT---IEGDGGVGTIKSITYSDGVPFTSSKHK 69

Query: 519 LEVLD 533
           ++ +D
Sbjct: 70  VDAID 74


>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2
           OS=Gallus gallus GN=USP2 PE=2 SV=1
          Length = 357

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
 Frame = -2

Query: 512 CTARSRKTRNYSYLS------------SAAHLTITLHETAANKVLVSLWVVEASHDRPNH 369
           C AR+R T+ +S               S A +  +   T  N  L  L + E +    NH
Sbjct: 231 CKARTRCTKKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLREFASQSCNH 290

Query: 368 FCRGFYALNHHGATLIGGDY 309
                YA+++H  T +GG Y
Sbjct: 291 AVYNLYAVSNHSGTTMGGHY 310


>sp|Q68CR7|LRC66_HUMAN Leucine-rich repeat-containing protein 66
           OS=Homo sapiens GN=LRRC66 PE=2 SV=1
          Length = 880

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 122 NSQFGSAEINGGPPAMAVSKGS**SPVYASRKR--IRGRDPRSGSAQH*GI 268
           N   GS E NGG P   +S+ +   P++  R +  IR +  R    +H GI
Sbjct: 282 NRSIGSEEANGGTPQSRISRETRLPPIHLHRMKSLIRSKAERPQGGRHTGI 332
tr_hit_id Q53HY7
Definition tr|Q53HY7|Q53HY7_TOBAC Putative uncharacterized protein c17 OS=Nicotiana tabacum
Align length 85
Score (bit) 125.0
E-value 1.0e-27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960571|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M12, 5'
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q53HY7|Q53HY7_TOBAC Putative uncharacterized protein c17 OS=N...   125   1e-27
tr|A7QFE4|A7QFE4_VITVI Chromosome chr8 scaffold_88, whole genome...   122   1e-26
tr|A7Q3P6|A7Q3P6_VITVI Chromosome chr13 scaffold_48, whole genom...   114   3e-24
tr|O80920|O80920_ARATH Expressed protein (Putative uncharacteriz...   114   4e-24
tr|Q9FLB1|Q9FLB1_ARATH Genomic DNA, chromosome 5, TAC clone:K18I...   112   9e-24
tr|A7P4J1|A7P4J1_VITVI Chromosome chr4 scaffold_6, whole genome ...   112   1e-23
tr|A9NQM9|A9NQM9_PICSI Putative uncharacterized protein OS=Picea...   111   2e-23
tr|A2WWK4|A2WWK4_ORYSI Putative uncharacterized protein OS=Oryza...   109   8e-23
tr|B6SZQ1|B6SZQ1_MAIZE Cyclase/dehydrase family protein OS=Zea m...   108   1e-22
tr|Q941W8|Q941W8_ORYSJ Bet v I allergen-like (Putative uncharact...   105   1e-21
tr|Q65WX2|Q65WX2_ORYSJ Os05g0473000 protein OS=Oryza sativa subs...   105   2e-21
tr|B4FIS0|B4FIS0_MAIZE Putative uncharacterized protein OS=Zea m...   104   2e-21
tr|O80992|O80992_ARATH Putative uncharacterized protein At2g2604...   104   3e-21
tr|A7PC91|A7PC91_VITVI Chromosome chr2 scaffold_11, whole genome...   104   3e-21
tr|A5AKM8|A5AKM8_VITVI Putative uncharacterized protein OS=Vitis...   104   3e-21
tr|Q9S718|Q9S718_ARATH Putative uncharacterized protein T07M07.2...   103   6e-21
tr|Q8S8E3|Q8S8E3_ARATH Expressed protein (Putative uncharacteriz...   103   6e-21
tr|A9THF2|A9THF2_PHYPA Predicted protein (Fragment) OS=Physcomit...   102   1e-20
tr|A7PM07|A7PM07_VITVI Chromosome chr14 scaffold_21, whole genom...   102   1e-20
tr|Q2A958|Q2A958_BRAOL Streptomyces cyclase/dehydrase family pro...   101   2e-20
tr|A9S6X3|A9S6X3_PHYPA Predicted protein OS=Physcomitrella paten...   101   3e-20
tr|O49686|O49686_ARATH Putative uncharacterized protein AT4g1787...   100   4e-20
tr|Q10MS2|Q10MS2_ORYSJ Os03g0297600 protein OS=Oryza sativa subs...   100   5e-20
tr|A2XFM1|A2XFM1_ORYSI Putative uncharacterized protein OS=Oryza...   100   5e-20
tr|B7FMB5|B7FMB5_MEDTR Putative uncharacterized protein OS=Medic...    99   1e-19
tr|Q308B1|Q308B1_SOLTU CAPIP1-like OS=Solanum tuberosum PE=2 SV=1      99   2e-19
tr|B7FMG9|B7FMG9_MEDTR Putative uncharacterized protein OS=Medic...    99   2e-19
tr|B6TSB9|B6TSB9_MAIZE Cyclase/dehydrase family protein OS=Zea m...    99   2e-19
tr|B7FJU7|B7FJU7_MEDTR Putative uncharacterized protein OS=Medic...    98   3e-19
tr|A7QN92|A7QN92_VITVI Chromosome chr2 scaffold_132, whole genom...    98   3e-19

>tr|Q53HY7|Q53HY7_TOBAC Putative uncharacterized protein c17
           OS=Nicotiana tabacum GN=c17 PE=2 SV=1
          Length = 213

 Score =  125 bits (315), Expect = 1e-27
 Identities = 60/85 (70%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +3

Query: 282 DLIFMYHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGDGQV 458
           D +  +HTH V P+Q CS VIQRI AP   VWSVVRRFDNPQAYKHF+ SC  + GDG V
Sbjct: 46  DSVVRFHTHPVGPNQCCSAVIQRISAPVSTVWSVVRRFDNPQAYKHFVKSCHVIVGDGDV 105

Query: 459 GSTREVRVVSGLPAASSTERLEVLD 533
           G+ REVRV+SGLPAASSTERLE+LD
Sbjct: 106 GTLREVRVISGLPAASSTERLEILD 130


>tr|A7QFE4|A7QFE4_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037390001
           PE=4 SV=1
          Length = 215

 Score =  122 bits (306), Expect = 1e-26
 Identities = 57/85 (67%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +3

Query: 282 DLIFMYHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGDGQV 458
           D +  +HTHVV P+Q CS V+Q+I AP   VWSVVRRFDNPQAYKHF+ SC  + GDG V
Sbjct: 47  DAVSRHHTHVVGPNQCCSAVVQQIAAPVSTVWSVVRRFDNPQAYKHFVKSCHVVVGDGDV 106

Query: 459 GSTREVRVVSGLPAASSTERLEVLD 533
           G+ REV V+SGLPAA+STERLE+LD
Sbjct: 107 GTLREVHVISGLPAANSTERLEILD 131


>tr|A7Q3P6|A7Q3P6_VITVI Chromosome chr13 scaffold_48, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029365001
           PE=4 SV=1
          Length = 212

 Score =  114 bits (285), Expect = 3e-24
 Identities = 55/85 (64%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
 Frame = +3

Query: 282 DLIFMYHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGDGQV 458
           D +  YH H V P Q CSMV+Q   A    VWSVVRRFDNPQAYKHF+ SC  + GDG +
Sbjct: 44  DAVASYHAHAVGPHQCCSMVVQTTAAALPTVWSVVRRFDNPQAYKHFLKSCHVIFGDGDI 103

Query: 459 GSTREVRVVSGLPAASSTERLEVLD 533
           G+ REV VVSGLPA SSTERLE+LD
Sbjct: 104 GTLREVHVVSGLPAESSTERLEILD 128


>tr|O80920|O80920_ARATH Expressed protein (Putative uncharacterized
           protein) (At2g38310/T19C21.20) OS=Arabidopsis thaliana
           GN=At2g38310 PE=2 SV=1
          Length = 207

 Score =  114 bits (284), Expect = 4e-24
 Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
 Frame = +3

Query: 297 YHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGDG-QVGSTR 470
           +HTH V P+Q CS VIQ I AP   VWSVVRRFDNPQAYKHF+ SC  + GDG  VGS R
Sbjct: 42  FHTHEVGPNQCCSAVIQEISAPISTVWSVVRRFDNPQAYKHFLKSCSVIGGDGDNVGSLR 101

Query: 471 EVRVVSGLPAASSTERLEVLD 533
           +V VVSGLPAASSTERL++LD
Sbjct: 102 QVHVVSGLPAASSTERLDILD 122


>tr|Q9FLB1|Q9FLB1_ARATH Genomic DNA, chromosome 5, TAC clone:K18I23
           (Putative uncharacterized protein At5g05440) (Putative
           uncharacterized protein) (AT5g05440/K18I23_25)
           OS=Arabidopsis thaliana GN=At5g05440 PE=2 SV=1
          Length = 203

 Score =  112 bits (281), Expect = 9e-24
 Identities = 56/89 (62%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
 Frame = +3

Query: 273 HLKDLIFMYHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGD 449
           H+ + + M+HTH V PDQ CS V+Q I AP E VW++VRRFDNP+ YK+FI  C  +QGD
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQGD 99

Query: 450 G-QVGSTREVRVVSGLPAASSTERLEVLD 533
           G  VG  REV VVSGLPA SSTERLE+LD
Sbjct: 100 GLHVGDLREVMVVSGLPAVSSTERLEILD 128


>tr|A7P4J1|A7P4J1_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032173001
           PE=4 SV=1
          Length = 233

 Score =  112 bits (280), Expect = 1e-23
 Identities = 55/94 (58%), Positives = 69/94 (73%)
 Frame = +3

Query: 252 LSIEELGHLKDLIFMYHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISS 431
           L+ EE   L+ +I  YHT   +P+   S++ Q+I APA+VVW  VR F+NPQ YKHFI  
Sbjct: 9   LTEEEFRALEPIIQNYHTFEPSPNTCTSLITQKIDAPAQVVWPFVRSFENPQKYKHFIKD 68

Query: 432 CFMQGDGQVGSTREVRVVSGLPAASSTERLEVLD 533
           C M+GDG VGS REV VVSGLPA++STERLE+LD
Sbjct: 69  CTMRGDGGVGSIREVTVVSGLPASTSTERLEILD 102


>tr|A9NQM9|A9NQM9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 213

 Score =  111 bits (278), Expect = 2e-23
 Identities = 52/82 (63%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
 Frame = +3

Query: 291 FMYHTHVVAPDQSCS-MVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSCFMQGDGQVGST 467
           + YH+H  A +  CS +V+Q+++AP  VVWS+VRRFD PQ YKHF+S+CFM+GD +VG  
Sbjct: 47  YHYHSHDGARECRCSSVVVQQVEAPVSVVWSLVRRFDQPQVYKHFVSNCFMRGDLKVGCL 106

Query: 468 REVRVVSGLPAASSTERLEVLD 533
           REVRVVSGLPAA+STERL++LD
Sbjct: 107 REVRVVSGLPAATSTERLDILD 128


>tr|A2WWK4|A2WWK4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04285 PE=4 SV=1
          Length = 208

 Score =  109 bits (273), Expect = 8e-23
 Identities = 57/81 (70%), Positives = 61/81 (75%), Gaps = 2/81 (2%)
 Frame = +3

Query: 297 YHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGD-GQVGSTR 470
           YH H V   Q CS V+Q I APA+ VWSVVRRFD PQAYK FI SC  + GD G+VGS R
Sbjct: 38  YHEHAVGAGQCCSTVVQAIAAPADAVWSVVRRFDRPQAYKKFIKSCRLVDGDGGEVGSVR 97

Query: 471 EVRVVSGLPAASSTERLEVLD 533
           EVRVVSGLPA SS ERLEVLD
Sbjct: 98  EVRVVSGLPATSSRERLEVLD 118


>tr|B6SZQ1|B6SZQ1_MAIZE Cyclase/dehydrase family protein OS=Zea mays
           PE=2 SV=1
          Length = 218

 Score =  108 bits (271), Expect = 1e-22
 Identities = 55/81 (67%), Positives = 62/81 (76%), Gaps = 2/81 (2%)
 Frame = +3

Query: 297 YHTHVV-APDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGDGQVGSTR 470
           +H H    P + CS V+QR+ APAE VWSVVRRFD PQAYK F+ SC  + GDG VG+ R
Sbjct: 55  HHEHAAPGPGRCCSAVVQRVAAPAEAVWSVVRRFDQPQAYKRFVRSCALLAGDGGVGTLR 114

Query: 471 EVRVVSGLPAASSTERLEVLD 533
           EVRVVSGLPAASS ERLEVLD
Sbjct: 115 EVRVVSGLPAASSRERLEVLD 135


>tr|Q941W8|Q941W8_ORYSJ Bet v I allergen-like (Putative
           uncharacterized protein) OS=Oryza sativa subsp. japonica
           GN=B1088C09.11 PE=4 SV=1
          Length = 208

 Score =  105 bits (262), Expect = 1e-21
 Identities = 56/81 (69%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
 Frame = +3

Query: 297 YHTHVVAPDQSCSMVIQRIKAPAEVVWSVVRRFDNPQAYKHFISSC-FMQGD-GQVGSTR 470
           YH H V   Q  S V+Q I APA+ VWSVVRRFD PQAYK FI SC  + GD G+VGS R
Sbjct: 38  YHEHAVGAGQCFSTVVQAIAAPADAVWSVVRRFDRPQAYKKFIKSCRLVDGDGGEVGSVR 97

Query: 471 EVRVVSGLPAASSTERLEVLD 533
           EVRVVSGLPA SS ERLEVLD
Sbjct: 98  EVRVVSGLPATSSRERLEVLD 118