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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960582
Clone id TST39A01NGRL0007_M23
Library
Length 277
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_M23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTTCCACCTTGCTCATACACCGTCACACAGAGCTACCAGTCAGGTGTGCTAGGAGTACCC
TAGTTGGTTGCCATGTCATCGGATAGCTCATCTGGCGTTGAATATGTGAAGGATGCCATA
GGCGAGAAGTTTCAGGACTTGCCATCATCTTCCTACACAGAGGCGGGGGAGGAGTCTTCA
TCAGCTGTTAAAGCACGCCTATTCCATCGCGCAGAGATCTCTGCATCATATTCTTGGGGG
TGGAAAGGCTGCTGATACATTTTTATTGGAAGGATAA
■■Homology search results ■■ -
sp_hit_id P42530
Definition sp|P42530|DIS2_DICDI Discoidin-2 OS=Dictyostelium discoideum
Align length 36
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960582|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M23, 5'
         (277 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42530|DIS2_DICDI Discoidin-2 OS=Dictyostelium discoideum GN=...    31   1.7  

>sp|P42530|DIS2_DICDI Discoidin-2 OS=Dictyostelium discoideum
           GN=dscE PE=1 SV=1
          Length = 257

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 269 PIKMYQQPFHPQEYDAEISARWNRRALTADEDSSPA 162
           PIK      HPQ Y+  IS RW   AL     S+P+
Sbjct: 128 PIKARSIAIHPQTYNNHISLRWELYALPVKSYSNPS 163
tr_hit_id A9CI67
Definition tr|A9CI67|A9CI67_AGRT5 Permease OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Align length 60
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960582|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M23, 5'
         (277 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9CI67|A9CI67_AGRT5 Permease OS=Agrobacterium tumefaciens (st...    33   7.2  
tr|Q8H4K6|Q8H4K6_ORYSJ Os07g0142000 protein OS=Oryza sativa subs...    33   7.2  
tr|A2YI28|A2YI28_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.2  
tr|Q6ZAH2|Q6ZAH2_ORYSJ Os08g0322600 protein OS=Oryza sativa subs...    33   9.4  

>tr|A9CI67|A9CI67_AGRT5 Permease OS=Agrobacterium tumefaciens
           (strain C58 / ATCC 33970) GN=AGR_C_3999 PE=4 SV=1
          Length = 300

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +1

Query: 88  SSGVEYVKDAIGEKFQDLPSSSYTEAGEESSSAVKARLFHRAEISASYSWGWKGC*YIFI 267
           SSG+ +V   IG+++   P ++   + E    A+ A +F +  IS++   G+ GC  IF+
Sbjct: 221 SSGLAFVLQVIGQRYTTAPQAAIFLSSEALFGALMASIFLKETISSA---GYVGCLIIFV 277


>tr|Q8H4K6|Q8H4K6_ORYSJ Os07g0142000 protein OS=Oryza sativa subsp.
           japonica GN=OJ1351_C05.119 PE=2 SV=1
          Length = 246

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146 HLPTQRRGR----SLHQLLKHAYSIAQRSLHHILGGGKAADTFL 265
           +LP Q+  R    S+    K  +   Q+S+HH+LGGGK+AD  L
Sbjct: 23  NLPKQKSVRFEDGSISDQAKRLFG-GQKSVHHVLGGGKSADVLL 65


>tr|A2YI28|A2YI28_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24857 PE=4 SV=1
          Length = 246

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 146 HLPTQRRGR----SLHQLLKHAYSIAQRSLHHILGGGKAADTFL 265
           +LP Q+  R    S+    K  +   Q+S+HH+LGGGK+AD  L
Sbjct: 23  NLPKQKSVRFEDGSISDQAKRLFG-GQKSVHHVLGGGKSADVLL 65


>tr|Q6ZAH2|Q6ZAH2_ORYSJ Os08g0322600 protein OS=Oryza sativa subsp.
           japonica GN=P0048E12.27 PE=2 SV=1
          Length = 418

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 256 ISSLSTPKNMMQRSLRDGIGVL*QLMKTPPPPLCRKMMA---SPETSRLWHPSHIQRQMS 86
           +S+LS P      S  DG   +      PPPPLCR+  +    P   R+   S++ R + 
Sbjct: 25  LSALSPPPPTTPESCPDGPSPVAPYFAPPPPPLCRRRRSWPPPPPPPRVSSSSYVGRGIL 84

Query: 85  YPMTW 71
            P T+
Sbjct: 85  LPATF 89