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NBDC - LSDB Archive
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DK960583
Clone id TST39A01NGRL0007_M24
Library
Length 651
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_M24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGATGTCTCTGCCTCTACCAGCAATGAGGACACCGCTCTTGATTCTAGTAGCAGCGACG
TCTCTTCCATCCCGGCAGAGAAGACGCAAGCAAGGCGATCATCTAGTAGGAGTAGCAGTA
AGAAGAACATTACCATAAGCCCCGCCGAGCTTGTTCCCGGAGCCCAGTTCCCCGGCAAGG
TTGTTGCCATCCAAACGTTCGGTGCATTTGTGGACTTTGGGGCTTTCACCAATGGGCTTG
CTCACATCTCCAGATTGAGTAAATCTTATGTCAAGAAAGTAGAGGATGTGGTGCAGGTAG
GGCAAGAAGTGAAGGTCCAGATTCTTGAGGTTGATTTTGAAGCCAACCGCATCTCACTCA
TGCTGGTTGGGGAGGCAGAGGACGAAGCTCAGGAGGAAGAAGGAGACAAAGCTAAAGGAG
GAGTGGGAGCCGAAAGAGCTTCTCAGCAGCAAGCACGGGCTCCTCGAAGGGATGCTTCGA
GGCGAGCTCCGTCTCAAAGGAATGTGGCCACAACCAAATTGCAGAAAGGTGAAATTATTG
TGGGAACTGTGAAGAACTTGATCAAATCGGGTGTGTTTATTGCCCTCCCCGATGGAACCG
ATGGGTATCTTCCAGTTCAGGAGGTTATTTTCAAGGTGCCGAATGCTGGCT
■■Homology search results ■■ -
sp_hit_id P38494
Definition sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis
Align length 156
Score (bit) 74.3
E-value 5.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960583|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M24, 5'
         (651 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillu...    74   5e-13
sp|Q45388|TEX_BORPE Protein tex OS=Bordetella pertussis GN=tex P...    70   1e-11
sp|A3DCH7|PNP_CLOTH Polyribonucleotide nucleotidyltransferase OS...    66   1e-10
sp|P46837|YHGF_ECOLI Protein yhgF OS=Escherichia coli (strain K1...    66   2e-10
sp|A3M1M7|PNP_ACIBT Polyribonucleotide nucleotidyltransferase OS...    65   4e-10
sp|Q6FF12|PNP_ACIAD Polyribonucleotide nucleotidyltransferase OS...    65   4e-10
sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus s...    64   7e-10
sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus h...    64   9e-10
sp|A6LSR0|PNP_CLOB8 Polyribonucleotide nucleotidyltransferase OS...    64   9e-10
sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium le...    63   2e-09
sp|Q3YX77|PNP_SHISS Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|Q83JG0|PNP_SHIFL Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|Q0T0B7|PNP_SHIF8 Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|Q31W43|PNP_SHIBS Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|Q6D9A1|PNP_ERWCT Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|P05055|PNP_ECOLI Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|B1IQV7|PNP_ECOLC Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|A8A4Y0|PNP_ECOHS Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|Q8X9M3|PNP_ECO57 Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|A7ZS61|PNP_ECO24 Polyribonucleotide nucleotidyltransferase OS...    63   2e-09
sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus a...    62   2e-09
sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus a...    62   2e-09
sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus a...    62   2e-09
sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus a...    62   2e-09
sp|A8G911|PNP_SERP5 Polyribonucleotide nucleotidyltransferase OS...    62   2e-09
sp|Q65VB0|PNP_MANSM Polyribonucleotide nucleotidyltransferase OS...    62   2e-09
sp|Q1R6H4|PNP_ECOUT Polyribonucleotide nucleotidyltransferase OS...    62   2e-09
sp|Q8FD87|PNP_ECOL6 Polyribonucleotide nucleotidyltransferase OS...    62   2e-09
sp|Q0TCU5|PNP_ECOL5 Polyribonucleotide nucleotidyltransferase OS...    62   2e-09
sp|A1AG69|PNP_ECOK1 Polyribonucleotide nucleotidyltransferase OS...    62   2e-09

>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus
           subtilis GN=ypfD PE=1 SV=1
          Length = 382

 Score = 74.3 bits (181), Expect = 5e-13
 Identities = 48/156 (30%), Positives = 73/156 (46%)
 Frame = +3

Query: 159 GAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQILEVDF 338
           G+   GKV  +  FGAFVD G   +GL HIS+LS S+V+K  DVV+ GQEVKV++L VD 
Sbjct: 188 GSVLDGKVQRLTDFGAFVDIGGI-DGLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDR 246

Query: 339 EANRISLMLVXXXXXXXXXXXXXXXXXXVGAEXXXXXXXXXXXXXXXXXXXXXXNVATTK 518
           +  RISL +                                             N    K
Sbjct: 247 DNERISLSI-------------------------------------KDTLPGPWNQIGEK 269

Query: 519 LQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQEV 626
           ++ G+++ GTV+ L+  G F+ +  G +G + + ++
Sbjct: 270 VKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQI 305



 Score = 53.5 bits (127), Expect = 9e-07
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = +3

Query: 156 PGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQILEVD 335
           PG    G V  + +FGAFV+      GL HIS++S  ++    +V++ GQ VKV++L+V+
Sbjct: 272 PGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVKVLDVN 331

Query: 336 FEANRISLML 365
               RISL +
Sbjct: 332 ENEERISLSM 341


>sp|Q45388|TEX_BORPE Protein tex OS=Bordetella pertussis GN=tex PE=4
           SV=2
          Length = 791

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +3

Query: 147 ELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQIL 326
           +L PG    G V  +  FGAFVD G   +GL HIS L++ +VK   DVV+VGQ V V++L
Sbjct: 666 DLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTVTVKVL 725

Query: 327 EVDFEANRISLML 365
           EVD    R++L +
Sbjct: 726 EVDVARKRVALTM 738


>sp|A3DCH7|PNP_CLOTH Polyribonucleotide nucleotidyltransferase
           OS=Clostridium thermocellum (strain ATCC 27405 / DSM
           1237) GN=pnp PE=3 SV=1
          Length = 700

 Score = 66.2 bits (160), Expect = 1e-10
 Identities = 30/71 (42%), Positives = 51/71 (71%)
 Frame = +3

Query: 147 ELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQIL 326
           ++ PG  F G+V+ + +FGAFV+F     GL HIS+L K  V++VED+V+VG ++ V+++
Sbjct: 619 DIEPGQVFLGRVIRVTSFGAFVEFLPGKEGLVHISKLDKKRVERVEDIVRVGDQILVKVI 678

Query: 327 EVDFEANRISL 359
           E+D +  R++L
Sbjct: 679 EID-KQGRVNL 688


>sp|P46837|YHGF_ECOLI Protein yhgF OS=Escherichia coli (strain K12)
           GN=yhgF PE=1 SV=3
          Length = 773

 Score = 65.9 bits (159), Expect = 2e-10
 Identities = 33/73 (45%), Positives = 44/73 (60%)
 Frame = +3

Query: 147 ELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQIL 326
           +L PG    G V  +  FGAFVD G   +GL HIS LS  +V+    VV+ G  VKV++L
Sbjct: 647 DLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVL 706

Query: 327 EVDFEANRISLML 365
           EVD +  RI+L +
Sbjct: 707 EVDLQRKRIALTM 719


>sp|A3M1M7|PNP_ACIBT Polyribonucleotide nucleotidyltransferase
           OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC
           755) GN=pnp PE=3 SV=2
          Length = 697

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 35/74 (47%), Positives = 48/74 (64%)
 Frame = +3

Query: 144 AELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQI 323
           AE+ PG  + GKV+ I  FGAFV+    T+GL HIS++S   +  V DV++ GQEVKVQ+
Sbjct: 619 AEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERIANVTDVLKEGQEVKVQV 678

Query: 324 LEVDFEANRISLML 365
            +VD    RI L +
Sbjct: 679 QDVD-NRGRIKLTM 691



 Score = 31.2 bits (69), Expect = 4.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 510 TTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQEV 626
           T +++ G+I  G V  +++ G F+ +  GTDG L + ++
Sbjct: 618 TAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQI 656


>sp|Q6FF12|PNP_ACIAD Polyribonucleotide nucleotidyltransferase
           OS=Acinetobacter sp. (strain ADP1) GN=pnp PE=3 SV=1
          Length = 697

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 35/74 (47%), Positives = 48/74 (64%)
 Frame = +3

Query: 144 AELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQI 323
           AE+ PG  + GKV+ I  FGAFV+    T+GL HIS++S   V  V DV++ GQ+VKVQ+
Sbjct: 619 AEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQISNERVANVSDVLKEGQDVKVQV 678

Query: 324 LEVDFEANRISLML 365
            +VD    RI L +
Sbjct: 679 ADVD-NRGRIKLSM 691



 Score = 31.2 bits (69), Expect = 4.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 510 TTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQEV 626
           T +++ G+I  G V  +++ G F+ +  GTDG L + ++
Sbjct: 618 TAEVEPGKIYDGKVIRIVEFGAFVNIMPGTDGLLHISQI 656


>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus
           saprophyticus subsp. saprophyticus (strain ATCC 15305 /
           DSM 20229) GN=rpsA PE=3 SV=1
          Length = 393

 Score = 63.9 bits (154), Expect = 7e-10
 Identities = 44/156 (28%), Positives = 63/156 (40%)
 Frame = +3

Query: 159 GAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQILEVDF 338
           G    GKV  +  FGAFVD G   +GL H+S LS  +VK  EDVV +G+ V V+I  VD 
Sbjct: 194 GDVIEGKVARLTNFGAFVDIGG-VDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDK 252

Query: 339 EANRISLMLVXXXXXXXXXXXXXXXXXXVGAEXXXXXXXXXXXXXXXXXXXXXXNVATTK 518
           ++ RISL +                                                  +
Sbjct: 253 DSERISLSI-------------------------------------KDTLPSPFESIKGE 275

Query: 519 LQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQEV 626
             +G++I GTV  L   G F+ +  G  G + + E+
Sbjct: 276 FNEGDVIEGTVVRLANFGAFVEIKPGVQGLVHISEI 311



 Score = 54.3 bits (129), Expect = 5e-07
 Identities = 29/73 (39%), Positives = 40/73 (54%)
 Frame = +3

Query: 147 ELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQIL 326
           E   G    G VV +  FGAFV+      GL HIS +S S++    + ++ GQ V V++L
Sbjct: 275 EFNEGDVIEGTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSVKVL 334

Query: 327 EVDFEANRISLML 365
            VD E  RISL +
Sbjct: 335 GVDVENERISLSI 347


>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus
           haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1
          Length = 392

 Score = 63.5 bits (153), Expect = 9e-10
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = +3

Query: 159 GAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQILEVDF 338
           G    GKV  +  FGAFVD G   +GL H+S LS  +V   EDVV VGQEV V++  V+ 
Sbjct: 194 GDVIKGKVARLTNFGAFVDIGG-VDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEK 252

Query: 339 EANRISLML 365
           +A RISL +
Sbjct: 253 DAERISLSI 261



 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +3

Query: 174 GKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQILEVDFEANRI 353
           GKVV +  FGAFV+      GL HIS ++  ++    + ++ GQ+V V+IL +D E  RI
Sbjct: 284 GKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERI 343

Query: 354 SLML 365
           SL +
Sbjct: 344 SLSI 347


>sp|A6LSR0|PNP_CLOB8 Polyribonucleotide nucleotidyltransferase
           OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB
           8052) GN=pnp PE=3 SV=1
          Length = 701

 Score = 63.5 bits (153), Expect = 9e-10
 Identities = 34/71 (47%), Positives = 45/71 (63%)
 Frame = +3

Query: 147 ELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQIL 326
           E+  G  + GKV  I TFGAFV+      GL HIS+L+K  V KVEDVV +G E+ V++ 
Sbjct: 617 EVKAGEVYLGKVTKITTFGAFVEILPSKEGLVHISKLAKERVNKVEDVVSIGDEILVKVT 676

Query: 327 EVDFEANRISL 359
           E+D    RI+L
Sbjct: 677 EID-NQGRINL 686


>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium
           leprae GN=rpsA PE=3 SV=2
          Length = 481

 Score = 62.8 bits (151), Expect = 2e-09
 Identities = 34/73 (46%), Positives = 46/73 (63%)
 Frame = +3

Query: 147 ELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQIL 326
           +L  GA   G V +I  FGAFVD G   +GL H+S LS  ++    +VVQVG EV V++L
Sbjct: 205 QLQKGAIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKHIDHPSEVVQVGNEVTVEVL 263

Query: 327 EVDFEANRISLML 365
           +VD +  R+SL L
Sbjct: 264 DVDMDRERVSLSL 276



 Score = 57.0 bits (136), Expect = 8e-08
 Identities = 29/69 (42%), Positives = 41/69 (59%)
 Frame = +3

Query: 159 GAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQILEVDF 338
           G   PGKV  +  FGAFV       GL HIS L++ +V+  + VV VG +  V+++++D 
Sbjct: 294 GQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDL 353

Query: 339 EANRISLML 365
           E  RISL L
Sbjct: 354 ERRRISLSL 362



 Score = 30.4 bits (67), Expect = 8.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 516 KLQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQEVIFK 635
           +LQKG I  G V +++  G F+ L  G DG + V E+ +K
Sbjct: 205 QLQKGAIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWK 243
tr_hit_id A7PEK9
Definition tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 159
Score (bit) 119.0
E-value 2.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960583|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_M24, 5'
         (651 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom...   119   2e-25
tr|Q9SZD6|Q9SZD6_ARATH Elongation factor Ts OS=Arabidopsis thali...   116   1e-24
tr|Q93ZG6|Q93ZG6_ARATH AT4g29060/F19B15_90 (Putative uncharacter...   116   1e-24
tr|Q5QEA9|Q5QEA9_ARATH Elongation factor Ts OS=Arabidopsis thali...   116   1e-24
tr|Q0WVD2|Q0WVD2_ARATH Elongation factor Ts (Fragment) OS=Arabid...   116   1e-24
tr|A9RZ32|A9RZ32_PHYPA Elongation factor Ts (Fragment) OS=Physco...   106   1e-21
tr|A9SG13|A9SG13_PHYPA Elongation factor Ts OS=Physcomitrella pa...   103   1e-20
tr|Q2QP54|Q2QP54_ORYSJ Elongation factor Ts OS=Oryza sativa subs...    99   2e-19
tr|A2ZLC1|A2ZLC1_ORYSI Elongation factor Ts OS=Oryza sativa subs...    99   2e-19
tr|A9SG12|A9SG12_PHYPA Predicted protein OS=Physcomitrella paten...    91   8e-17
tr|Q5QEB2|Q5QEB2_CHLRE Elongation factor Ts OS=Chlamydomonas rei...    78   4e-13
tr|Q5QEB1|Q5QEB1_CHLRE Plastid-specific ribosomal protein-7 OS=C...    78   4e-13
tr|Q5QEB0|Q5QEB0_CHLRE Chloroplast polyprotein of elongation fac...    78   4e-13
tr|A8J641|A8J641_CHLRE Plastid-specific ribosomal protein 7 OS=C...    78   4e-13
tr|A8J639|A8J639_CHLRE Polyprotein of PSRP-7 and EF-Ts, splice v...    78   4e-13
tr|A8J637|A8J637_CHLRE Elongation factor Ts OS=Chlamydomonas rei...    78   4e-13
tr|B0KBU5|B0KBU5_THEP3 RNA binding S1 domain protein OS=Thermoan...    76   2e-12
tr|B0K3L4|B0K3L4_THEPX RNA binding S1 domain protein OS=Thermoan...    76   2e-12
tr|Q01BN8|Q01BN8_OSTTA Chloroplast polyprotein of elongation fac...    76   2e-12
tr|A9B5U0|A9B5U0_HERA2 RNA binding S1 domain protein OS=Herpetos...    76   2e-12
tr|B8FHU3|B8FHU3_9DELT RNA binding S1 domain protein OS=Desulfat...    76   2e-12
tr|A7D078|A7D078_9BACT RNA binding S1 domain protein (Fragment) ...    76   2e-12
tr|Q11LK4|Q11LK4_MESSB RNA binding S1 OS=Mesorhizobium sp. (stra...    73   2e-11
tr|B8G7S3|B8G7S3_9CHLR RNA binding S1 domain protein OS=Chlorofl...    73   2e-11
tr|Q039G5|Q039G5_LACC3 SSU ribosomal protein S1P OS=Lactobacillu...    72   2e-11
tr|B3WE79|B3WE79_LACCB 30S Ribosomal protein S1 OS=Lactobacillus...    72   2e-11
tr|Q47CF7|Q47CF7_DECAR RNA binding S1 OS=Dechloromonas aromatica...    72   3e-11
tr|B5QPD9|B5QPD9_LACRH 30S ribosomal protein S1 OS=Lactobacillus...    72   3e-11
tr|Q0KBQ7|Q0KBQ7_RALEH Transcriptional accessory protein OS=Rals...    72   4e-11
tr|B3R4R7|B3R4R7_CUPTR Transcriptional accessory protein OS=Cupr...    72   4e-11

>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
           PE=4 SV=1
          Length = 553

 Score =  119 bits (297), Expect = 2e-25
 Identities = 68/159 (42%), Positives = 89/159 (55%)
 Frame = +3

Query: 147 ELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVKVQIL 326
           ELVPGA F GKV +IQ FGAF+DFGAFT+GL H+SRLS SYVK V ++V +GQEVKV+++
Sbjct: 143 ELVPGATFTGKVKSIQPFGAFIDFGAFTDGLVHVSRLSDSYVKDVGNIVSIGQEVKVRLV 202

Query: 327 EVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGAEXXXXXXXXXXXXXXXXXXXXXXNV 506
           E + E  RISL +                     A                         
Sbjct: 203 EANTETGRISLTM-------RDSDDPTKPQQQKDAASSSDKPRPSRRNTQRSNQRRDEVK 255

Query: 507 ATTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQE 623
            T+K  KG+ + GTVKNL ++G FI+LP+G +G+LP  E
Sbjct: 256 KTSKFVKGQDLEGTVKNLNRAGAFISLPEGEEGFLPTSE 294


>tr|Q9SZD6|Q9SZD6_ARATH Elongation factor Ts OS=Arabidopsis thaliana
           GN=AT4g29060 PE=2 SV=1
          Length = 953

 Score =  116 bits (291), Expect = 1e-24
 Identities = 70/184 (38%), Positives = 96/184 (52%)
 Frame = +3

Query: 72  PAEKTQAXXXXXXXXXKKNITISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHIS 251
           PA  +Q+          +   +   ELVPGA F GKV AIQ FGAFVDFGAFT+GL H+S
Sbjct: 107 PAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVS 166

Query: 252 RLSKSYVKKVEDVVQVGQEVKVQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGA 431
           +LS ++VK V  VV +GQEVKV+++E D E+ RISL +                    G+
Sbjct: 167 QLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTM--------RENDDPPKRQSGGS 218

Query: 432 EXXXXXXXXXXXXXXXXXXXXXXNVATTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYL 611
           +                      N   +K  KG+++ G VKNL +SG FI + +G +G+L
Sbjct: 219 DKPRSGGKRDGSKGGGQRKGEGFN---SKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFL 275

Query: 612 PVQE 623
           P  E
Sbjct: 276 PTAE 279


>tr|Q93ZG6|Q93ZG6_ARATH AT4g29060/F19B15_90 (Putative
           uncharacterized protein At4g29060) OS=Arabidopsis
           thaliana GN=At4g29060 PE=2 SV=1
          Length = 455

 Score =  116 bits (291), Expect = 1e-24
 Identities = 70/184 (38%), Positives = 96/184 (52%)
 Frame = +3

Query: 72  PAEKTQAXXXXXXXXXKKNITISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHIS 251
           PA  +Q+          +   +   ELVPGA F GKV AIQ FGAFVDFGAFT+GL H+S
Sbjct: 107 PAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVS 166

Query: 252 RLSKSYVKKVEDVVQVGQEVKVQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGA 431
           +LS ++VK V  VV +GQEVKV+++E D E+ RISL +                    G+
Sbjct: 167 QLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTM--------RENDDPPKRQSGGS 218

Query: 432 EXXXXXXXXXXXXXXXXXXXXXXNVATTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYL 611
           +                      N   +K  KG+++ G VKNL +SG FI + +G +G+L
Sbjct: 219 DKPRSGGKRDGSKGGGQRKGEGFN---SKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFL 275

Query: 612 PVQE 623
           P  E
Sbjct: 276 PTAE 279


>tr|Q5QEA9|Q5QEA9_ARATH Elongation factor Ts OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 710

 Score =  116 bits (291), Expect = 1e-24
 Identities = 70/184 (38%), Positives = 96/184 (52%)
 Frame = +3

Query: 72  PAEKTQAXXXXXXXXXKKNITISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHIS 251
           PA  +Q+          +   +   ELVPGA F GKV AIQ FGAFVDFGAFT+GL H+S
Sbjct: 107 PAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVS 166

Query: 252 RLSKSYVKKVEDVVQVGQEVKVQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGA 431
           +LS ++VK V  VV +GQEVKV+++E D E+ RISL +                    G+
Sbjct: 167 QLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTM--------RENDDPPKRQSGGS 218

Query: 432 EXXXXXXXXXXXXXXXXXXXXXXNVATTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYL 611
           +                      N   +K  KG+++ G VKNL +SG FI + +G +G+L
Sbjct: 219 DKPRSGGKRDGSKGGGQRKGEGFN---SKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFL 275

Query: 612 PVQE 623
           P  E
Sbjct: 276 PTAE 279


>tr|Q0WVD2|Q0WVD2_ARATH Elongation factor Ts (Fragment)
           OS=Arabidopsis thaliana GN=At4g29060 PE=2 SV=1
          Length = 631

 Score =  116 bits (291), Expect = 1e-24
 Identities = 70/184 (38%), Positives = 96/184 (52%)
 Frame = +3

Query: 72  PAEKTQAXXXXXXXXXKKNITISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHIS 251
           PA  +Q+          +   +   ELVPGA F GKV AIQ FGAFVDFGAFT+GL H+S
Sbjct: 107 PAPTSQSRGTARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVS 166

Query: 252 RLSKSYVKKVEDVVQVGQEVKVQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGA 431
           +LS ++VK V  VV +GQEVKV+++E D E+ RISL +                    G+
Sbjct: 167 QLSDNFVKDVSSVVTIGQEVKVRLVEADIESKRISLTM--------RENDDPPKRQSGGS 218

Query: 432 EXXXXXXXXXXXXXXXXXXXXXXNVATTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYL 611
           +                      N   +K  KG+++ G VKNL +SG FI + +G +G+L
Sbjct: 219 DKPRSGGKRDGSKGGGQRKGEGFN---SKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFL 275

Query: 612 PVQE 623
           P  E
Sbjct: 276 PTAE 279


>tr|A9RZ32|A9RZ32_PHYPA Elongation factor Ts (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_21938 PE=3 SV=1
          Length = 854

 Score =  106 bits (265), Expect = 1e-21
 Identities = 65/185 (35%), Positives = 94/185 (50%), Gaps = 1/185 (0%)
 Frame = +3

Query: 75  AEKTQAXXXXXXXXXKKNITISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISR 254
           A+K Q           K IT+   ++VPGA F G+V  +Q +GAFVD GAFTNGL H+S 
Sbjct: 8   AKKMQRNSTMKGRAGGKTITVQKDQIVPGAVFTGRVRFVQPYGAFVDIGAFTNGLVHVSE 67

Query: 255 LSKSYVKKVEDVVQVGQEVKVQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGAE 434
           L+  YVK V D V+VGQEV V +LE++ ++ RI+L +                    G+ 
Sbjct: 68  LAPGYVKDVSDFVKVGQEVTVTVLEMNEKSKRIALTM--------RDRESEAAVPGDGSG 119

Query: 435 XXXXXXXXXXXXXXXXXXXXXXNVATTKLQKGEIIVGTVKNLIKSGVFIALPD-GTDGYL 611
                                  +  +K +KGE++ GTVKN+I++G FI  P+ G + +L
Sbjct: 120 KPTNQGKIAGRGNGGSRSNLKPKLRQSKAKKGEVLKGTVKNIIRNGAFIEFPEQGEEAFL 179

Query: 612 PVQEV 626
              EV
Sbjct: 180 RGSEV 184


>tr|A9SG13|A9SG13_PHYPA Elongation factor Ts OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_129127 PE=3 SV=1
          Length = 899

 Score =  103 bits (256), Expect = 1e-20
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
 Frame = +3

Query: 123 KNITISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVG 302
           K +T+   ++V GA F GKV ++Q++GAFVD GAFT+GL HIS L+  +VK+V DVV +G
Sbjct: 53  KTLTVQKDQIVAGAVFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIG 112

Query: 303 QEVKVQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGAEXXXXXXXXXXXXXXXX 482
           QEV V++LE++ +A RI+L +                    G+                 
Sbjct: 113 QEVTVRVLELNEKAGRIALTMRDRENEEEEQSSRPGSESSAGS----------------- 155

Query: 483 XXXXXXNVATTKLQKGEIIVGTVKNLIKSGVFIALPD-GTDGYLPVQEV 626
                 +   TKL+KGE + GTVKN+I++G FI   + G + +L   EV
Sbjct: 156 GSGGEESGRPTKLKKGEELKGTVKNIIRNGAFIEFAEQGEEAFLRGSEV 204


>tr|Q2QP54|Q2QP54_ORYSJ Elongation factor Ts OS=Oryza sativa subsp.
           japonica GN=Os12g0541500 PE=3 SV=1
          Length = 1123

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 56/163 (34%), Positives = 82/163 (50%)
 Frame = +3

Query: 135 ISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVK 314
           ++  +LVPGA F GKV +I+ FG FVD GAFT GL HISR+S  +VK +  +  VGQEV 
Sbjct: 135 LNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDISSLFTVGQEVS 194

Query: 315 VQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGAEXXXXXXXXXXXXXXXXXXXX 494
           V+++E + E  RISL +                                           
Sbjct: 195 VRLVEANKETGRISLTM---RTGGDYVKPKTETPKAASGGRNTTATTSRGSPRQTRERDE 251

Query: 495 XXNVATTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQE 623
             ++  T   +G+ + G VKN  ++G F+ LPDG++G+LP +E
Sbjct: 252 AKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPREE 294


>tr|A2ZLC1|A2ZLC1_ORYSI Elongation factor Ts OS=Oryza sativa subsp.
           indica GN=OsI_38621 PE=3 SV=1
          Length = 1123

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 56/163 (34%), Positives = 82/163 (50%)
 Frame = +3

Query: 135 ISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVGQEVK 314
           ++  +LVPGA F GKV +I+ FG FVD GAFT GL HISR+S  +VK +  +  VGQEV 
Sbjct: 135 LNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDISSLFTVGQEVS 194

Query: 315 VQILEVDFEANRISLMLVXXXXXXXXXXXXXXXXXXVGAEXXXXXXXXXXXXXXXXXXXX 494
           V+++E + E  RISL +                                           
Sbjct: 195 VRLVEANKETGRISLTM---RTGGDYVKPKTETPKAASGGRNTTATTSRGSPRQTRERDE 251

Query: 495 XXNVATTKLQKGEIIVGTVKNLIKSGVFIALPDGTDGYLPVQE 623
             ++  T   +G+ + G VKN  ++G F+ LPDG++G+LP +E
Sbjct: 252 AKSMGETNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPREE 294


>tr|A9SG12|A9SG12_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164715 PE=4 SV=1
          Length = 421

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 42/81 (51%), Positives = 62/81 (76%)
 Frame = +3

Query: 123 KNITISPAELVPGAQFPGKVVAIQTFGAFVDFGAFTNGLAHISRLSKSYVKKVEDVVQVG 302
           K +T+   ++V GA F GKV ++Q++GAFVD GAFT+GL HIS L+  +VK+V DVV +G
Sbjct: 125 KTLTVQKDQIVAGAVFTGKVRSVQSYGAFVDIGAFTDGLVHISELAPKFVKEVTDVVSIG 184

Query: 303 QEVKVQILEVDFEANRISLML 365
           QEV V++LE++ +A RI+L +
Sbjct: 185 QEVTVRVLELNEKAGRIALTM 205



 Score = 38.1 bits (87), Expect = 0.47
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 504 VATTKLQKGEIIVGTVKNLIKSGVFIALPD-GTDGYLPVQEV 626
           V  TKL+KGE + GTVKN+I++G FI   + G + +L   EV
Sbjct: 282 VGWTKLKKGEELKGTVKNIIRNGAFIEFAEQGEEAFLRGSEV 323