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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960591
Clone id TST39A01NGRL0007_N08
Library
Length 703
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_N08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AACCACTCTCGCGGAGTCAGGGGCGCGAAGGGCACATCACCGACGCCACTCTTCGTCTGC
ATAGAAACACTGGCTCTGATTCTCGAAGGACCTCTAGCGGATATCTACTATTCTTCAACC
TGGCTAGATCACGTTCACACACAGCCACACACACACACAGCTTTACGGGTAGGCTTTGTG
GTCTCACATTCGCAGAACAGCTAAAATGCCGGGCCCCGGAACAGCTTCTGTGGAAAATTC
TGCCCTTCTCAATGAGGTAGACGAGATGTTTGATGAGCTGAAGAAGAAGAAGAAAAAAGA
GAAGAAGAACCCCACAGTCCTGTATGGCGGAGAAGCTATGGAGTCACTCGAACCTAGTAG
CCCACCTAGTCAAAAGAAGACAAAGAAGAAAAGCAAGGAGAAGGTGCTCTTTGAGGATCC
TTCACCAGCGTTAGATAAGAGCGCGTCTAAGTCAAAAAAGAGCAAGAAAAGGAAGCCAGA
TGAGCCTCTTGATTCAGAGCCGGAATTGAAGGTTTCGAAAGTTGAACAGAGTGAGAGTGA
AGAATCAAGTGAGGTTATCAATCCATATGCAGTAAGTAATTTTAGAATATCAGAAGCCCT
GAGGAGAAAGCTGAAGACAAAAGGAATAGAGGCTCTGTTCCCCATTCAAGCTCTTACATT
CAATGCTATTTTCAAAGGAAATGATTTGGGTGGGGCCGTGCTC
■■Homology search results ■■ -
sp_hit_id Q650T9
Definition sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica
Align length 45
Score (bit) 62.0
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960591|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_N08, 5'
         (703 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Ory...    62   3e-09
sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Ara...    59   3e-08
sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spi...    51   5e-06
sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicu...    44   6e-04
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus G...    44   6e-04
sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens G...    43   0.001
sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mu...    42   0.002
sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo s...    42   0.003
sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=A...    35   0.51 
sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=...    34   0.67 
sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Ara...    33   1.1  
sp|Q0I1X0|RHLB_HAES1 ATP-dependent RNA helicase rhlB OS=Haemophi...    32   3.3  
sp|B0UUZ9|RHLB_HAES2 ATP-dependent RNA helicase rhlB OS=Haemophi...    31   5.7  

>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza
           sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1
          Length = 696

 Score = 62.0 bits (149), Expect = 3e-09
 Identities = 29/45 (64%), Positives = 38/45 (84%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           +P A++NFRISE+LR KLK+KGI+ALFPIQA TF+ +  G+DL G
Sbjct: 113 DPNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVG 157


>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7
           OS=Arabidopsis thaliana GN=RH7 PE=2 SV=2
          Length = 671

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           NP AVS FRIS  LR KLK  GIEALFPIQA TF+ +  G DL G
Sbjct: 94  NPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVG 138


>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7
           OS=Spinacia oleracea GN=RH7 PE=2 SV=1
          Length = 685

 Score = 51.2 bits (121), Expect = 5e-06
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           +P ++SNFRIS+ L+  L +KGI+ALFPIQA+TF+ +  G DL G
Sbjct: 105 DPNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVG 149


>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus
           GN=Ddx21 PE=2 SV=1
          Length = 782

 Score = 44.3 bits (103), Expect = 6e-04
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQA TF+ ++ G DL
Sbjct: 183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDL 222


>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus
           GN=Ddx21 PE=1 SV=2
          Length = 851

 Score = 44.3 bits (103), Expect = 6e-04
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQA TF+ ++ G DL
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDL 298


>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens
           GN=DDX21 PE=1 SV=5
          Length = 783

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQA TF+ ++ G DL
Sbjct: 187 AFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDL 226


>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus
           musculus GN=Ddx50 PE=2 SV=1
          Length = 734

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQ  TF  +++G DL
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDL 174


>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo
           sapiens GN=DDX50 PE=1 SV=1
          Length = 737

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQ  TF  +++G DL
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDL 177


>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53
           OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1
          Length = 616

 Score = 34.7 bits (78), Expect = 0.51
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           A+S   IS  + + L +KGIE LFPIQ        +G D+ G
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIG 146


>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401
           OS=Methanocaldococcus jannaschii GN=MJ1401 PE=3 SV=1
          Length = 808

 Score = 34.3 bits (77), Expect = 0.67
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 557 INPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNA-IFKGNDL 688
           I  Y +    I E L+  +K++GIE L P+Q L+  A +  G+DL
Sbjct: 186 IENYKIDELDIPEELKEIIKSRGIEELLPVQTLSVKAGLLNGDDL 230
tr_hit_id A7QGV9
Definition tr|A7QGV9|A7QGV9_VITVI Chromosome chr16 scaffold_94, whole genome shotgun sequence OS=Vitis vinifera
Align length 45
Score (bit) 67.8
E-value 7.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960591|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_N08, 5'
         (703 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QGV9|A7QGV9_VITVI Chromosome chr16 scaffold_94, whole genom...    68   7e-10
tr|A9SDC8|A9SDC8_PHYPA Predicted protein OS=Physcomitrella paten...    66   2e-09
tr|A3C0Q9|A3C0Q9_ORYSJ Putative uncharacterized protein OS=Oryza...    62   4e-08
tr|A6MCY9|A6MCY9_9ORYZ DEAD/DEAH box helicase family protein OS=...    61   6e-08
tr|A2Z376|A2Z376_ORYSI Putative uncharacterized protein OS=Oryza...    61   6e-08
tr|Q9M6R6|Q9M6R6_PHAAU RNA helicase OS=Phaseolus aureus GN=VRH1 ...    59   3e-07
tr|B4FF50|B4FF50_MAIZE Putative uncharacterized protein OS=Zea m...    58   5e-07
tr|Q9CWZ5|Q9CWZ5_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.008
tr|Q8K2L4|Q8K2L4_MOUSE Ddx21 protein (Fragment) OS=Mus musculus ...    44   0.008
tr|Q6PCP0|Q6PCP0_MOUSE DEAD (Asp-Glu-Ala-Asp) box polypeptide 21...    44   0.008
tr|Q3ULC7|Q3ULC7_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.008
tr|Q3TVJ3|Q3TVJ3_MOUSE DEAD (Asp-Glu-Ala-Asp) box polypeptide 21...    44   0.008
tr|A4FV23|A4FV23_BOVIN DDX21 protein OS=Bos taurus GN=DDX21 PE=2...    44   0.010
tr|A4V6M8|A4V6M8_DUGJA Nucleolar RNA helicase II/Gu protein (Fra...    43   0.017
tr|B2RDL0|B2RDL0_HUMAN cDNA, FLJ96663, Homo sapiens DEAD (Asp-Gl...    43   0.017
tr|B1H1J4|B1H1J4_DANRE Ddx21 protein OS=Danio rerio GN=ddx21 PE=...    43   0.023
tr|A4RW46|A4RW46_OSTLU Predicted protein OS=Ostreococcus lucimar...    43   0.023
tr|Q8BRU5|Q8BRU5_MOUSE Putative uncharacterized protein OS=Mus m...    42   0.029
tr|Q5BKP5|Q5BKP5_MOUSE DEAD (Asp-Glu-Ala-Asp) box polypeptide 50...    42   0.029
tr|Q57Z07|Q57Z07_9TRYP Nucleolar RNA helicase II, putative OS=Tr...    42   0.029
tr|Q4QJI9|Q4QJI9_LEIMA Nucleolar RNA helicase II, putative OS=Le...    42   0.029
tr|A4HSE3|A4HSE3_LEIIN Nucleolar RNA helicase II, putative (Frag...    42   0.029
tr|Q5R409|Q5R409_PONAB Putative uncharacterized protein DKFZp459...    42   0.038
tr|B3RVR9|B3RVR9_TRIAD Putative uncharacterized protein OS=Trich...    42   0.038
tr|Q5VX37|Q5VX37_HUMAN DEAD (Asp-Glu-Ala-Asp) box polypeptide 50...    42   0.038
tr|Q53FI9|Q53FI9_HUMAN Nucleolar protein GU2 variant (Fragment) ...    42   0.038
tr|B4DW97|B4DW97_HUMAN cDNA FLJ61430, highly similar to ATP-depe...    42   0.038
tr|B4DED6|B4DED6_HUMAN cDNA FLJ56545, highly similar to ATP-depe...    42   0.038
tr|B5RIC3|B5RIC3_SALSA DEAD (Asp-Glu-Ala-Asp) box polypeptide 21...    42   0.050
tr|A4H460|A4H460_LEIBR Nucleolar RNA helicase II, putative OS=Le...    42   0.050

>tr|A7QGV9|A7QGV9_VITVI Chromosome chr16 scaffold_94, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038510001
           PE=3 SV=1
          Length = 600

 Score = 67.8 bits (164), Expect = 7e-10
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           NP A+SNFRISE LR KLK+KGIEALFPIQA+TF+ I  G+DL G
Sbjct: 11  NPNALSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVG 55


>tr|A9SDC8|A9SDC8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_127777 PE=3 SV=1
          Length = 689

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 31/46 (67%), Positives = 37/46 (80%)
 Frame = +2

Query: 557 INPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           ++P AVSNF I +ALR KLK KGIE+LFPIQA TF A+F GND+ G
Sbjct: 107 VDPMAVSNFNIGKALRDKLKAKGIESLFPIQAQTFEAVFDGNDMVG 152


>tr|A3C0Q9|A3C0Q9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028881 PE=3 SV=1
          Length = 685

 Score = 62.0 bits (149), Expect = 4e-08
 Identities = 29/45 (64%), Positives = 38/45 (84%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           +P A++NFRISE+LR KLK+KGI+ALFPIQA TF+ +  G+DL G
Sbjct: 102 DPNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVG 146


>tr|A6MCY9|A6MCY9_9ORYZ DEAD/DEAH box helicase family protein
           OS=Oryza brachyantha PE=3 SV=1
          Length = 688

 Score = 61.2 bits (147), Expect = 6e-08
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           +P A++NFRISE LR KLK+KGI+ALFPIQA TF+ +  G+DL G
Sbjct: 104 DPNALANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVG 148


>tr|A2Z376|A2Z376_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32075 PE=3 SV=1
          Length = 685

 Score = 61.2 bits (147), Expect = 6e-08
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           +P A++NFRISE LR KLK+KGI+ALFPIQA TF+ +  G+DL G
Sbjct: 102 DPNALANFRISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVG 146


>tr|Q9M6R6|Q9M6R6_PHAAU RNA helicase OS=Phaseolus aureus GN=VRH1
           PE=2 SV=1
          Length = 713

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           +P AVS  RISE LR KLK KGIE+LFPIQA+TF+ +  G+DL G
Sbjct: 127 DPNAVSKLRISEPLRLKLKEKGIESLFPIQAMTFDLVLDGSDLVG 171


>tr|B4FF50|B4FF50_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 506

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 26/45 (57%), Positives = 38/45 (84%)
 Frame = +2

Query: 560 NPYAVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDLGG 694
           +P A++NFRISE+LR+ L++KGI++LFPIQA TF+ +  G+DL G
Sbjct: 119 DPNALTNFRISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVG 163


>tr|Q9CWZ5|Q9CWZ5_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Ddx21 PE=2 SV=2
          Length = 832

 Score = 44.3 bits (103), Expect = 0.008
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQA TF+ ++ G DL
Sbjct: 240 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDL 279


>tr|Q8K2L4|Q8K2L4_MOUSE Ddx21 protein (Fragment) OS=Mus musculus
           GN=Ddx21 PE=2 SV=1
          Length = 689

 Score = 44.3 bits (103), Expect = 0.008
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQA TF+ ++ G DL
Sbjct: 97  AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDL 136


>tr|Q6PCP0|Q6PCP0_MOUSE DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           OS=Mus musculus GN=Ddx21 PE=2 SV=1
          Length = 851

 Score = 44.3 bits (103), Expect = 0.008
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +2

Query: 569 AVSNFRISEALRRKLKTKGIEALFPIQALTFNAIFKGNDL 688
           A SNF ISE   + LK +G+  LFPIQA TF+ ++ G DL
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDL 298