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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960593
Clone id TST39A01NGRL0007_N10
Library
Length 642
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_N10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTTGGGGTTTTTTTTTTTTTTTGGGGCTATTCTCGTTTGATTCGAGCTCGACACAGTCAG
GGCAGCCAACATGCAGTTCATGGCACGGGCGGTCAGAACGGACCGATTTAAGGTGGCGTT
GCTCTCTGCATCACGAAGGAGTATCAAAGCTCCTCTTTCTGATCACTTGTTTGGAAGAGG
GTGCGCTTTCTGCTCTGCTGCCAATGCTAACCCTCCTTCTAACAATCAAGCTTCAGCTCA
ACCTCAGACACCTACTCCGCCTCCTCCCCCTCCACCCCCTCCTCCCTCCTATGCGAGCAC
AGACTATTCTTCAAGCTACCAACAGACCACTGTAAGGAGGCGGCCTTATAATTTGGAAGC
CAAGATGAGGATGAAGCAATATCGGAGAGAGGCCATGCACCGCCAACAAGCTCTTGAGAT
TGAAGAGGAAGAGAGGAATTTTCAACTGGATCAATCAAAGCTGTATCAGAAGGGCGATCC
TGGTACAATGCAAGGTATAGTGAAAGATATTATCACTGTGGGTTACTTCATGTCCTTACC
AGATGGCAGGGAAGGGTTTTTACCCTGCATGCAGCTAGGTTGCACCGGTGGGATACCCCT
GTTGACGCGACTGTTCAAAGTTGGAGATGAAATTACTGTACG
■■Homology search results ■■ -
sp_hit_id Q30TH2
Definition sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251)
Align length 59
Score (bit) 34.3
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960593|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_N10, 5'
         (620 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS...    34   0.53 
sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria mening...    34   0.70 
sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein O...    32   2.6  
sp|Q9UKE5|TNIK_HUMAN TRAF2 and NCK-interacting protein kinase OS...    31   5.9  

>sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=pnp PE=3 SV=1
          Length = 721

 Score = 34.3 bits (77), Expect = 0.53
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +1

Query: 442 YQKGDPGTMQGIVKDIITVGYFMSLPDGREGFLPCMQLGCTGGIPLLTRLFKVGDEITV 618
           Y+ GD    +GIVK I+  G F+ LPDG +G L   ++     +  ++ + K G+EI V
Sbjct: 651 YKVGD--IHKGIVKKIVEFGAFIELPDGVDGLLHISKIS-DQRVEKVSDILKEGEEINV 706


>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria
           meningitidis serogroup B GN=rpsA PE=1 SV=1
          Length = 561

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQLDQSKL-----------YQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E  R   L   +            + KGD   + G VK I   G F+ LP G +G 
Sbjct: 334 LEIDEGRRRISLGMKQCQANPWEEFAANHNKGDK--ISGAVKSITDFGVFVGLPGGIDGL 391

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  T       R +K G+E+
Sbjct: 392 VHLSDLSWTESGEEAVRKYKKGEEV 416


>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein
           OS=Schizosaccharomyces pombe GN=mug70 PE=1 SV=1
          Length = 730

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 346 RMKQYRR-EAMHRQQALEIEEEERNFQLDQSKLYQKGDPGTMQGIVKDIITVGYFMSL 516
           R +QY+R EA+ ++   E+ ++  NF+    K+ + G+PGT+     D     +  SL
Sbjct: 24  RKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRNGEPGTVDSAALDPALTVHMQSL 81


>sp|Q9UKE5|TNIK_HUMAN TRAF2 and NCK-interacting protein kinase
           OS=Homo sapiens GN=TNIK PE=1 SV=1
          Length = 1360

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = +1

Query: 313 RRRPYNLEAKMRMKQYRREAMHRQQAL--EIEEEERNFQLDQSKL 441
           +RR Y  E +MR ++ RR A H Q+ +  ++EEE+R  ++ Q +L
Sbjct: 423 QRRHY--EEQMRREEERRRAEHEQEYIRRQLEEEQRQLEILQQQL 465
tr_hit_id Q13VC4
Definition tr|Q13VC4|Q13VC4_BURXL SSU ribosomal protein S1P OS=Burkholderia xenovorans (strain LB400)
Align length 85
Score (bit) 40.0
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960593|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_N10, 5'
         (620 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q13VC4|Q13VC4_BURXL SSU ribosomal protein S1P OS=Burkholderia...    40   0.11 
tr|B2T628|B2T628_BURPP Ribosomal protein S1 OS=Burkholderia phyt...    40   0.11 
tr|B2JF06|B2JF06_BURP8 Ribosomal protein S1 OS=Burkholderia phym...    40   0.11 
tr|B1G2W0|B1G2W0_9BURK Ribosomal protein S1 OS=Burkholderia gram...    40   0.11 
tr|Q63S06|Q63S06_BURPS 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|Q62M27|Q62M27_BURMA Ribosomal protein S1 OS=Burkholderia mall...    39   0.32 
tr|Q3JPY0|Q3JPY0_BURP1 Ribosomal protein S1 OS=Burkholderia pseu...    39   0.32 
tr|Q2SY24|Q2SY24_BURTA Ribosomal protein S1 OS=Burkholderia thai...    39   0.32 
tr|Q1BY26|Q1BY26_BURCA SSU ribosomal protein S1P OS=Burkholderia...    39   0.32 
tr|Q0BH91|Q0BH91_BURCM SSU ribosomal protein S1P OS=Burkholderia...    39   0.32 
tr|B4EB40|B4EB40_BURCJ 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|B1YV35|B1YV35_BURA4 Ribosomal protein S1 OS=Burkholderia ambi...    39   0.32 
tr|B1JXS1|B1JXS1_BURCC Ribosomal protein S1 OS=Burkholderia ceno...    39   0.32 
tr|A9ADV4|A9ADV4_BURM1 Ribosomal protein S1 (Small subunit ribos...    39   0.32 
tr|A4JCH6|A4JCH6_BURVG SSU ribosomal protein S1P OS=Burkholderia...    39   0.32 
tr|A3NXW9|A3NXW9_BURP0 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A3NC30|A3NC30_BURP6 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A3MHP0|A3MHP0_BURM7 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A2S4R8|A2S4R8_BURM9 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A1V6M1|A1V6M1_BURMS 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A0K5M3|A0K5M3_BURCH SSU ribosomal protein S1P OS=Burkholderia...    39   0.32 
tr|B7CK47|B7CK47_BURPS 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|B2GZD2|B2GZD2_BURPS 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|B1SYZ0|B1SYZ0_9BURK Ribosomal protein S1 OS=Burkholderia ambi...    39   0.32 
tr|B1HD06|B1HD06_BURPS 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|B1FBZ1|B1FBZ1_9BURK Ribosomal protein S1 OS=Burkholderia ambi...    39   0.32 
tr|A9K5G8|A9K5G8_BURMA 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A8HKI2|A8HKI2_BURPS 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A8E7Y8|A8E7Y8_BURPS 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 
tr|A5XXG2|A5XXG2_BURMA 30S ribosomal protein S1 OS=Burkholderia ...    39   0.32 

>tr|Q13VC4|Q13VC4_BURXL SSU ribosomal protein S1P OS=Burkholderia
           xenovorans (strain LB400) GN=Bxeno_A3427 PE=4 SV=1
          Length = 577

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD   +QG +K I   G F+ LP G +G 
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGL 405

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 406 VHLSDLSWSETGEEAVRKYKKGDEV 430


>tr|B2T628|B2T628_BURPP Ribosomal protein S1 OS=Burkholderia
           phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_3001
           PE=4 SV=1
          Length = 577

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD   +QG +K I   G F+ LP G +G 
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGL 405

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 406 VHLSDLSWSETGEEAVRKYKKGDEV 430


>tr|B2JF06|B2JF06_BURP8 Ribosomal protein S1 OS=Burkholderia
           phymatum (strain DSM 17167 / STM815) GN=Bphy_0746 PE=4
           SV=1
          Length = 589

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD   +QG +K I   G F+ LP G +G 
Sbjct: 361 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGL 418

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 419 VHLSDLSWSETGEEAVRKYKKGDEV 443


>tr|B1G2W0|B1G2W0_9BURK Ribosomal protein S1 OS=Burkholderia
           graminis C4D1M GN=BgramDRAFT_3687 PE=4 SV=1
          Length = 577

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD   +QG +K I   G F+ LP G +G 
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGL 405

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 406 VHLSDLSWSETGEEAVRKYKKGDEV 430


>tr|Q63S06|Q63S06_BURPS 30S ribosomal protein S1 OS=Burkholderia
           pseudomallei GN=rpsA PE=4 SV=1
          Length = 570

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD  T  G +K I   G F+ LP G +G 
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDKIT--GAIKSITDFGVFIGLPGGIDGL 399

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 400 VHLSDLSWSEAGEEAVRKYKKGDEV 424


>tr|Q62M27|Q62M27_BURMA Ribosomal protein S1 OS=Burkholderia mallei
           GN=rpsA PE=4 SV=1
          Length = 570

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD  T  G +K I   G F+ LP G +G 
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDKIT--GAIKSITDFGVFIGLPGGIDGL 399

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 400 VHLSDLSWSEAGEEAVRKYKKGDEV 424


>tr|Q3JPY0|Q3JPY0_BURP1 Ribosomal protein S1 OS=Burkholderia
           pseudomallei (strain 1710b) GN=rpsA PE=4 SV=1
          Length = 570

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD  T  G +K I   G F+ LP G +G 
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDKIT--GAIKSITDFGVFIGLPGGIDGL 399

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 400 VHLSDLSWSEAGEEAVRKYKKGDEV 424


>tr|Q2SY24|Q2SY24_BURTA Ribosomal protein S1 OS=Burkholderia
           thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
           CIP 106301) GN=rpsA PE=4 SV=1
          Length = 570

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD  T  G +K I   G F+ LP G +G 
Sbjct: 342 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDKIT--GAIKSITDFGVFIGLPGGIDGL 399

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 400 VHLSDLSWSEAGEEAVRKYKKGDEV 424


>tr|Q1BY26|Q1BY26_BURCA SSU ribosomal protein S1P OS=Burkholderia
           cenocepacia (strain AU 1054) GN=Bcen_0568 PE=4 SV=1
          Length = 576

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD  T  G +K I   G F+ LP G +G 
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDKIT--GAIKSITDFGVFIGLPGGIDGL 405

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 406 VHLSDLSWSEAGEEAVRKYKKGDEV 430


>tr|Q0BH91|Q0BH91_BURCM SSU ribosomal protein S1P OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_0923 PE=4
           SV=1
          Length = 576

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
 Frame = +1

Query: 391 LEIEEEERNFQL-----------DQSKLYQKGDPGTMQGIVKDIITVGYFMSLPDGREGF 537
           LEI+E+ R   L           D S+ ++KGD  T  G +K I   G F+ LP G +G 
Sbjct: 348 LEIDEDRRRISLGMKQCKPNPWDDFSRNFKKGDKIT--GAIKSITDFGVFIGLPGGIDGL 405

Query: 538 LPCMQLGCTGGIPLLTRLFKVGDEI 612
           +    L  +       R +K GDE+
Sbjct: 406 VHLSDLSWSEAGEEAVRKYKKGDEV 430