NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960606
Clone id TST39A01NGRL0007_O01
Library
Length 653
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_O01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CTCAATTCATGTACTAAGGATTGATGACCTAGACGATTGCCTGCAAACAGGAGACATTAT
CCATACATTAACTCTGCAGGTGATGGACGAGTTTGGAAATCCTGTAGAACGAGGGCGCAG
AGTTGTATTACAGCTGGACAATTTAGAGCTCCAAGATAGCCAGGGTTGTAACCGGATGGT
GGATGATGATGGGTGCGTGACATTGGGAGGCCTCTTGAAAGTGATAGGACCATTCAATGC
AAAAGCTAGGATTTCCCTTCTTACCGAAGAACAGAAGCTTGTTTATTTTAAAGAATTTTT
TCTCAAAAGAAGAATTCTTCAAGTTGTTTCTGAGATACCTGAAGATTGTGCGACTGGTGG
GATTCTACATGATATTATTGTTAACGTTATTGATGAGAATGGGAACATTGACAAGACCAT
GACAGGTGGTCAGCATTTAATTATTGTCAGTTGTGCCCAGCGGAGTGCTTATCCTTTAAT
GGAAGGGATGTGCTGTATCAAGTCTATACAGCTGTCTGATCAACCGGGCACCTGGTGTTG
CAGCATCAATCACGTGATGTACCAGGAACTTGAGGCACAAATCAAGGTAAATCTTGTTAC
AAGTGTTGGGCAGTCAATGAACTTTTTCGATACGAATGACAACGATGAAGCTC
■■Homology search results ■■ -
sp_hit_id A1Z9E2
Definition sp|A1Z9E2|LIN54_DROME Protein lin-54 homolog OS=Drosophila melanogaster
Align length 82
Score (bit) 30.8
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960606|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_O01, 5'
         (653 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1Z9E2|LIN54_DROME Protein lin-54 homolog OS=Drosophila melan...    31   6.5  
sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa GN=swr-...    30   8.5  
sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homol...    30   8.5  

>sp|A1Z9E2|LIN54_DROME Protein lin-54 homolog OS=Drosophila
            melanogaster GN=mip120 PE=1 SV=1
          Length = 950

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 164  GCNRMVD--DDGCVTLGGLLKVIGPFNAKARISLLTEEQKLVYFKEFFLKRRILQVVSEI 337
            GC  M D  D    +L GL+ V G    KA+   L E +  +YF +  ++  I+ ++S I
Sbjct: 843  GCRNMEDRPDVDMDSLDGLMGVEGQKKDKAKNKQLNENRANIYFTDDVIEATIMCMISRI 902

Query: 338  PEDCATGGILHDIIVNVIDENG 403
                     + D+   V++E G
Sbjct: 903  VMHEKQNVAVEDMEREVMEEMG 924


>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa GN=swr-1
            PE=3 SV=1
          Length = 1845

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = -3

Query: 222  TFKRPPNVTHPSSSTIRLQPWLSWSSKLSSCNTTLRPRSTGFPNSSITCRVNVWIMSPVC 43
            + + PPN  H S  T+      S S   S   T  +P     P+S +     V +  P  
Sbjct: 866  SLEAPPNTRHDSQETVAATDMQSQSQTQSPKTTDTKPTDVDTPHSELA----VSVQKPDS 921

Query: 42   RQSS 31
            RQSS
Sbjct: 922  RQSS 925


>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
           OS=Schizosaccharomyces pombe GN=byr3 PE=2 SV=1
          Length = 179

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = +1

Query: 460 AECLSFNGRDVLYQVYTAV*STGHLVLQHQSRDVPGT*GTNQGKSCYKCWAVNELFR 630
           +EC         Y   TA    GHLV     RD P +    QG  CYKC  V  + R
Sbjct: 49  SECTEPQQEKTCYACGTA----GHLV-----RDCPSSPNPRQGAECYKCGRVGHIAR 96
tr_hit_id A9TXM7
Definition tr|A9TXM7|A9TXM7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 207
Score (bit) 134.0
E-value 4.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960606|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_O01, 5'
         (653 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TXM7|A9TXM7_PHYPA Predicted protein OS=Physcomitrella paten...   134   4e-30
tr|Q9FNF4|Q9FNF4_ARATH Emb|CAB66404.1 OS=Arabidopsis thaliana GN...    97   1e-18
tr|A5AJP7|A5AJP7_VITVI Putative uncharacterized protein OS=Vitis...    94   6e-18
tr|A7QF30|A7QF30_VITVI Chromosome chr16 scaffold_86, whole genom...    88   5e-16
tr|Q9FNF5|Q9FNF5_ARATH Similarity to En/Spm-like transposon prot...    77   7e-13
tr|Q9LSV2|Q9LSV2_ARATH Genomic DNA, chromosome 3, P1 clone: MWL2...    56   2e-06
tr|Q8L755|Q8L755_ARATH Putative uncharacterized protein At5g2428...    56   2e-06
tr|Q75AY7|Q75AY7_ASHGO ADL217Wp OS=Ashbya gossypii GN=ADL217W PE...    36   1.8  
tr|Q976S0|Q976S0_SULTO Putative uncharacterized protein ST0120 O...    35   5.2  
tr|Q1CSV1|Q1CSV1_HELPH Outer membrane protein HopJ OS=Helicobact...    34   8.9  
tr|Q0CVE3|Q0CVE3_ASPTN Putative uncharacterized protein OS=Asper...    34   8.9  

>tr|A9TXM7|A9TXM7_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_98645 PE=4 SV=1
          Length = 1712

 Score =  134 bits (338), Expect = 4e-30
 Identities = 70/207 (33%), Positives = 115/207 (55%)
 Frame = +2

Query: 2    SIHVLRIDDLDDCLQTGDIIHTLTLQVMDEFGNPVERGRRVVLQLDNLELQDSQGCNRMV 181
            S+ +   D LD+CL+ G +I    +Q  D+F N VE G  + + L+ L+L D +G  R V
Sbjct: 1031 SVALTECDRLDNCLRPGQMIEKFVIQAFDDFKNVVENGSEIRVGLEGLQLVDKRGSRRQV 1090

Query: 182  DDDGCVTLGGLLKVIGPFNAKARISLLTEEQKLVYFKEFFLKRRILQVVSEIPEDCATGG 361
             ++GC+ LGGLLKV   +N++  I++ +++ + +    F    R L+++ E PE+  TG 
Sbjct: 1091 VENGCIHLGGLLKVTAEYNSRGTITVQSDKGRSLLALNFHTVYRSLRILKE-PEEAYTGS 1149

Query: 362  ILHDIIVNVIDENGNIDKTMTGGQHLIIVSCAQRSAYPLMEGMCCIKSIQLSDQPGTWCC 541
             L  + V VIDE+GN+D  M G  H + V    + + PL+ G+C +  I L   PG+W  
Sbjct: 1150 QLEGLKVQVIDEDGNVDTKMDGSLHYLTVDWNSKLSIPLVCGVCSLPPINLPLVPGSWYG 1209

Query: 542  SINHVMYQELEAQIKVNLVTSVGQSMN 622
             + H ++ EL   ++ N    +G S N
Sbjct: 1210 RVAHAVHPELFCALEANFEEKLGVSTN 1236


>tr|Q9FNF4|Q9FNF4_ARATH Emb|CAB66404.1 OS=Arabidopsis thaliana
            GN=At5g24280 PE=4 SV=1
          Length = 1634

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 10/187 (5%)
 Frame = +2

Query: 74   LQVMDEFGNPVERGRRVVLQLDNLELQDSQGCNRMVDDDGCVTLGGLLKVIGPFNAKARI 253
            +Q+ D + N V  G  V++ +D   ++D  G NR VD  GC+ L G+LKV   +     +
Sbjct: 1045 MQLFDGYNNHVAEGTDVLIHIDGYRIEDWMGINRKVDSRGCINLSGILKVTEGYGKSVSL 1104

Query: 254  SLLTEEQKLVYFKEFFLKRRILQVVSEIPEDCATGGILHDIIVNVIDENGNIDKTM---- 421
            S+++  + +++ KE  +  R L++V+E+P+ C  G  L ++I  V + +G++D ++    
Sbjct: 1105 SVMSGNE-VIFCKESQIDERQLRLVTELPDCCTAGTNLMNLIFQVTELDGSLDTSIHHDE 1163

Query: 422  -TGGQHLIIVSCAQRSA-----YPLMEGMCCIKSIQLSDQPGTWCCSINHVMYQELEAQI 583
             +G  H + +     S      Y  + G C + S+ L +  G + C + H  Y EL+  I
Sbjct: 1164 KSGCFHTMSIESDSSSVESAIRYAFVHGSCKVSSLSLPENEGVFSCRVFHSRYPELQMSI 1223

Query: 584  KVNLVTS 604
            K+ + ++
Sbjct: 1224 KIQVTSA 1230


>tr|A5AJP7|A5AJP7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039356 PE=4 SV=1
          Length = 1117

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 10/199 (5%)
 Frame = +2

Query: 32  DDCLQTGDIIHTLTLQVMDEFGNPVERGRRVVLQLDNLELQDSQGCNRMVDDDGCVTLGG 211
           D+ L  G +I  L L++ D +GN    G  V   +D    QD  G  R VDD GC+ L G
Sbjct: 146 DNQLLPGCVIEELVLEMFDAYGNHAREGLEVQFNVDGFCFQDHNGLKRKVDDRGCIDLSG 205

Query: 212 LLKVIGPFNAKARISLLTEEQKLVYFKEFFLKRRILQVVSEIPEDCATGGILHDIIVNVI 391
           LL+V   +     +S+L+   K+V+ +E   ++R L+  S +P+ CA G  L +I+  +I
Sbjct: 206 LLRVTTGYGKNVSLSVLS-GNKVVFKQELQTEKRELRAASIVPQSCAAGSQLENIVFEII 264

Query: 392 DENGNIDKTM-----TGGQHLIIVSCAQ-----RSAYPLMEGMCCIKSIQLSDQPGTWCC 541
           +  G +D+T+      G  H + +            +    G C I +I L  + G +  
Sbjct: 265 NSKGEVDETVHEEEKHGQFHTLTIMSDSFYLDGSVRFAFRNGRCIIPTIPLPRKQGDFTF 324

Query: 542 SINHVMYQELEAQIKVNLV 598
              H  + EL   +KV++V
Sbjct: 325 LAAHSCHPELSLAVKVSVV 343


>tr|A7QF30|A7QF30_VITVI Chromosome chr16 scaffold_86, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00037253001
            PE=4 SV=1
          Length = 1533

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 61/216 (28%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
 Frame = +2

Query: 2    SIHVLRIDDLDDCLQTGDIIHTLTLQVM-------DEFGNPVERGRRVVLQLDNLELQDS 160
            S H++ I   DD       IHT+ L ++       D +GN    G  V   +D    QD 
Sbjct: 981  SSHIVIILPHDD-----QFIHTIVLCMLFLPLFMFDAYGNHAREGLEVQFNVDGFCFQDH 1035

Query: 161  QGCNRMVDDDGCVTLGGLLKVIGPFNAKARISLLTEEQKLVYFKEFFLKRRILQVVSEIP 340
             G  R VDD GC+ L GLL+V   +     +S+L+   K+V+ +E   ++R L+  S +P
Sbjct: 1036 NGLKRKVDDRGCIDLSGLLRVTTGYGKNVSLSVLS-GNKVVFKQELQTEKRELRAASIVP 1094

Query: 341  EDCATGGILHDIIVNVIDENGNIDKTM-----TGGQHLIIVSCAQ-----RSAYPLMEGM 490
            + CA G  L +I+  +I+  G +D+T+      G  H + +            +    G 
Sbjct: 1095 QSCAAGSQLENIVFEIINSKGEVDETVHEEEKHGQFHTLTIMSDSFYLDGSVRFAFRNGR 1154

Query: 491  CCIKSIQLSDQPGTWCCSINHVMYQELEAQIKVNLV 598
            C I +I L  + G +     H  + EL   +KV++V
Sbjct: 1155 CIIPTIPLPRKQGDFTFLAAHSCHPELSLAVKVSVV 1190


>tr|Q9FNF5|Q9FNF5_ARATH Similarity to En/Spm-like transposon protein
            OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1335

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 19/204 (9%)
 Frame = +2

Query: 41   LQTGDIIHTLTLQVMDEFGNPVERGRRVVLQLDNLELQDSQGCNRMVDDDGCVTLGGLLK 220
            L  G  +    L+V D + N V  G  V++ ++   + DS G N+ V+  GC+ L G+L+
Sbjct: 761  LLPGSTVQNYILEVFDGYNNHVAEGTNVLICIEGYCINDSMGLNQKVNSCGCIDLSGILQ 820

Query: 221  VIGP--------FNAKARISL-LTEEQKLVYFKEFFLKRRILQVVSEIPEDCATGGILHD 373
            V           +++  R+SL +      ++ KE   +RR L +++++PE C  G  L +
Sbjct: 821  VTAGYGKTSNICYHSFVRLSLSVMSGIDEIFKKESQTERRELMLLTKLPECCVAGSNLTN 880

Query: 374  IIVNVIDENGNIDKTM-----TGGQHLIIVSCAQRS-----AYPLMEGMCCIKSIQLSDQ 523
            +I  V D +G +D ++     +G  H + +     S      Y  + G C + ++ L ++
Sbjct: 881  LIFKVTDSDGVMDTSIHHDEKSGCFHTMSIETDSSSDESEIRYAFVHGSCKVPTLSLPER 940

Query: 524  PGTWCCSINHVMYQELEAQIKVNL 595
             G +   + H  + EL   +K+ L
Sbjct: 941  EGVFSFKVFHSRFPELHLSLKIQL 964


>tr|Q9LSV2|Q9LSV2_ARATH Genomic DNA, chromosome 3, P1 clone: MWL2
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 258

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 36/165 (21%), Positives = 78/165 (47%), Gaps = 27/165 (16%)
 Frame = +2

Query: 191 GCVTLGGLLKVIGPFNAKARISLLTEEQKLVYFKEFFLKRRILQVVSE------------ 334
           GC+ L  +LKV   +     +S+++  + +++ KE  ++ R L++++E            
Sbjct: 28  GCIDLSDILKVTEGYGKSVSLSVMSGNE-VIFRKESQIEERELRLLTEELVSLLAFDPEI 86

Query: 335 -----IPEDCATGGILHDIIVNVIDENGNIDKTM-----TGGQHLIIVSCAQRS-----A 469
                +P+ CA G  L ++I  V++ +G++D ++      G  H + +     S      
Sbjct: 87  VCIDQLPDCCAAGTNLMNLIFQVMELDGSLDTSIHHDEKPGCFHTMSIESDSSSIESAIR 146

Query: 470 YPLMEGMCCIKSIQLSDQPGTWCCSINHVMYQELEAQIKVNLVTS 604
           Y  + G C + S+ L +  G + C + H  Y EL+  +K+ + ++
Sbjct: 147 YAFVHGSCKVSSLSLPENEGVFSCRVFHSRYPELQMSVKIQVTSA 191


>tr|Q8L755|Q8L755_ARATH Putative uncharacterized protein At5g24280
           (At5g24280) OS=Arabidopsis thaliana GN=At5g24280 PE=2
           SV=1
          Length = 218

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
 Frame = +2

Query: 275 KLVYFKEFFLKRRILQVVSEIPEDCATGGILHDIIVNVIDENGNIDKTM-----TGGQHL 439
           ++++ KE  ++ R L++++E+P+ CA G  L ++I  V++ +G++D ++      G  H 
Sbjct: 5   EVIFRKESQIEERELRLLTELPDCCAAGTNLMNLIFQVMELDGSLDTSIHHDEKPGCFHT 64

Query: 440 IIVSCAQRS-----AYPLMEGMCCIKSIQLSDQPGTWCCSINHVMYQELEAQIKVNLVTS 604
           + +     S      Y  + G C + S+ L +  G + C + H  Y EL+  +K+ + ++
Sbjct: 65  MSIESDSSSIESAIRYAFVHGSCKVSSLSLPENEGVFSCRVFHSRYPELQMSVKIQVTSA 124


>tr|Q75AY7|Q75AY7_ASHGO ADL217Wp OS=Ashbya gossypii GN=ADL217W PE=4
           SV=1
          Length = 750

 Score = 36.2 bits (82), Expect = 1.8
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 326 VSEIPEDCATGGILHDIIVNVIDENGNIDKTMTGGQHLIIVSCAQRSAYPLMEGMCCIKS 505
           ++++P+DC   GI    I+ V      I + +T G    I SC   S  P+   + C+K 
Sbjct: 1   MNQVPQDCLQPGI----ILTVGSHEVKIIQYLTSGGFAQIYSCEVLSPGPIQGSLACLKR 56

Query: 506 IQLSDQP 526
           + + D+P
Sbjct: 57  VHVPDKP 63


>tr|Q976S0|Q976S0_SULTO Putative uncharacterized protein ST0120
           OS=Sulfolobus tokodaii GN=ST0120 PE=4 SV=1
          Length = 123

 Score = 34.7 bits (78), Expect = 5.2
 Identities = 25/69 (36%), Positives = 36/69 (52%)
 Frame = -3

Query: 426 PVMVLSMFPFSSITLTIISCRIPPVAQSSGISETT*RILLLRKNSLK*TSFCSSVRREIL 247
           P+ V S  PFS+ +L I SC + P+     IS ++   LL   +  K T F S V     
Sbjct: 57  PLTVASTLPFSNASLAIFSCSLYPI-----ISLSSTNTLLFPSSFTKTTLFPSEV----- 106

Query: 246 AFALNGPIT 220
           +FA+NG I+
Sbjct: 107 SFAINGKIS 115


>tr|Q1CSV1|Q1CSV1_HELPH Outer membrane protein HopJ OS=Helicobacter
           pylori (strain HPAG1) GN=HPAG1_0454 PE=4 SV=1
          Length = 368

 Score = 33.9 bits (76), Expect = 8.9
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 74  LQVMDEFGNPVERGRRVVLQLDNLELQDSQGCNRMVD--DDGCVTLGGLLKVIGPFNAKA 247
           +Q +++   P+     +   L NLELQ SQ  NRM+         +   L  + P +   
Sbjct: 129 VQALEKMQEPITNPLELAENLKNLELQFSQSQNRMLSSLSSQIAQISNSLNALDPTSYSK 188

Query: 248 RISLLTEEQKLVYFKEFFLKRR 313
            +S +      V +K FF K++
Sbjct: 189 NVSSMYGVSLSVGYKHFFTKKK 210