DK960613 |
Clone id |
TST39A01NGRL0007_O08 |
Library |
TST39 |
Length |
676 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_O08. 5' end sequence. |
Accession |
DK960613 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3476Contig1 |
Sequence |
GAGAAACCCCCTCTCAGAGAGTAAAATAGGAAAAGAAAAGCTTCAATCATCTTCTGCCCA AGCGTGCTTTCCATTGCTTCTCTGCATCAAAGCGTACTGTGGGGAAAGCGCTTACTTTTC ATAAGTGTGTGAGTGTCTGTGGCTGTGTGTGTCTGTGTGTGTGTGCCCCGCTTTTATACC CTCCTCCTCGACTGTTTCGCCTTTCCAACAAAAGAAGCTTTATTCACTTCCCTCCTTTCA TCTCGCAGACAGACACAGATACACGCAGGCCTTGCCTTCAACAGAGTTTTGTCGTATAGC TTCCATGGAGACCTCGGCTATGCTTTCTCCCCTCAGGTTTGGTGTCCATCACGAACTCAT GCGCAAGCACCCCCACCCCCCAGAGCCTTCAGAGCCGTGGGTACCACCTACTCCTGAGCC CAATTTCAGAATTGACGACCTGCTGGACTTCTCCAACGGCGAGCTTTGTGATGAATTTGA CGAAGAGGAGGAGGAGCAATTGAAAGAGGGGAATTCGAGCTGTGGCGATGGTGGCATTGA GCTGAAGGCCGACAGGTGTGTGGCGCAAGAAGAAAGCCAACAGCTGGCAACGACAAGCGG TCTCTGTGTGCCGTCGGATGAGCTAGCTGACCAGCTGGAATGGCTCTCTACTTTCATTGA AGATAGCTCATACTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P69781 |
Definition |
sp|P69781|GAT13_ARATH GATA transcription factor 13 OS=Arabidopsis thaliana |
Align length |
83 |
Score (bit) |
41.2 |
E-value |
0.005 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960613|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_O08, 5' (676 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P69781|GAT13_ARATH GATA transcription factor 13 OS=Arabidopsi... 41 0.005 sp|Q9SD38|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis... 41 0.007 sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis... 38 0.056 sp|Q9FH57|GAT14_ARATH GATA transcription factor 14 OS=Arabidopsi... 36 0.21 sp|O82632|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsi... 35 0.48 sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis... 34 0.81 sp|P17101|HBSAG_HBVA4 Large envelope protein OS=Hepatitis B viru... 31 5.2 sp|Q8MYE8|PAAF1_DICDI Probable proteasomal ATPase-associated fac... 31 6.8 sp|Q4R1S6|HBSAG_HBVA8 Large envelope protein OS=Hepatitis B viru... 31 6.8 sp|P06902|H3L_CAIMO Histone H3-like OS=Cairina moschata PE=3 SV=2 31 6.8 sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein... 31 6.8 sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1 OS=Cryp... 30 8.9 sp|O91534|HBSAG_HBVA7 Large envelope protein OS=Hepatitis B viru... 30 8.9 sp|Q91C35|HBSAG_HBVA6 Large envelope protein OS=Hepatitis B viru... 30 8.9 sp|P03141|HBSAG_HBVA3 Large envelope protein OS=Hepatitis B viru... 30 8.9
>sp|P69781|GAT13_ARATH GATA transcription factor 13 OS=Arabidopsis thaliana GN=At5g25830 PE=2 SV=1 Length = 331
Score = 41.2 bits (95), Expect = 0.005 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +2
Query: 422 NFRIDDLL-DFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLATTS 598 +F +DDLL DFSN S +L + Q+ + + + Sbjct: 13 DFAVDDLLVDFSNDDDEENDVVADSTTTTTITDSSNFSAADLPSFHGDVQDGT---SFSG 69
Query: 599 GLCVPSDELADQLEWLSTFIEDS 667 LC+PSD+LAD+LEWLS +++S Sbjct: 70 DLCIPSDDLADELEWLSNIVDES 92
>sp|Q9SD38|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1 Length = 312
Score = 40.8 bits (94), Expect = 0.007 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 8/93 (8%) Frame = +2
Query: 422 NFRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEE----SQQLA 589 +F +DDLLDFS + ++++ R V+ E S + Sbjct: 27 DFSVDDLLDFSKEEEDDDVLVED------------EAELKVQRKRGVSDENTLHRSNDFS 74
Query: 590 T----TSGLCVPSDELADQLEWLSTFIEDSSYS 676 T TSGL VP D++A+ LEWLS F++DSS++ Sbjct: 75 TADFHTSGLSVPMDDIAE-LEWLSNFVDDSSFT 106
>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1 Length = 240
Score = 37.7 bits (86), Expect = 0.056 Identities = 32/82 (39%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Frame = +2
Query: 428 RIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLAT--TSG 601 RIDDLLDFSN SS E + S L T T Sbjct: 13 RIDDLLDFSNDEIFSSSSTVTSSAASSAASS------ENPFSFPSSTYTSPTLLTDFTHD 66
Query: 602 LCVPSDELADQLEWLSTFIEDS 667 LCVPSD+ A LEWLS F++DS Sbjct: 67 LCVPSDDAA-HLEWLSRFVDDS 87
>sp|Q9FH57|GAT14_ARATH GATA transcription factor 14 OS=Arabidopsis thaliana GN=At5g66320 PE=2 SV=1 Length = 339
Score = 35.8 bits (81), Expect = 0.21 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Frame = +2
Query: 422 NFRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSC---GDGGIELKADRCVAQEESQQLAT 592 +F +DDLLD SN S D G L+ + + Sbjct: 40 DFSVDDLLDLSNDDVFADEETDLKAQHEMVRVSSEEPNDDGDALRRSSDFSGCDDFGSLP 99
Query: 593 TSGLCVPSDELADQLEWLSTFIEDS 667 TS L +P+D+LA+ LEWLS F+EDS Sbjct: 100 TSELSLPADDLAN-LEWLSHFVEDS 123
>sp|O82632|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1 Length = 308
Score = 34.7 bits (78), Expect = 0.48 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Frame = +2
Query: 422 NFRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLATT-- 595 +F +DDLLDFSN G ++ D L S L T Sbjct: 17 SFVVDDLLDFSNDDGEVDD----------GLNTLPDSST-LSTGTLTDSSNSSSLFTDGT 65
Query: 596 --SGLCVPSDELADQLEWLSTFIEDS 667 S L +P+D++A+ LEWLS F+E+S Sbjct: 66 GFSDLYIPNDDIAE-LEWLSNFVEES 90
>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1 Length = 264
Score = 33.9 bits (76), Expect = 0.81 Identities = 25/80 (31%), Positives = 32/80 (40%) Frame = +2
Query: 428 RIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLATTSGLC 607 RIDDLLDFSN +S + + +C Sbjct: 13 RIDDLLDFSNEDIFSASSSGGSTAATSSSSFPPPQNPSFHHHHLPSSADHHSFL--HDIC 70
Query: 608 VPSDELADQLEWLSTFIEDS 667 VPSD+ A LEWLS F++DS Sbjct: 71 VPSDDAA-HLEWLSQFVDDS 89
>sp|P17101|HBSAG_HBVA4 Large envelope protein OS=Hepatitis B virus genotype A2 subtype adw2 (isolate Germany/991/1990) GN=S PE=1 SV=3 Length = 400
Score = 31.2 bits (69), Expect = 5.2 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = -3
Query: 587 PAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSPAGRQ 432 P +L P + P +R S P I+PP LR H +A +W S A Q Sbjct: 79 PQAQGMLTPVSTIPPPASANRQSGRQPTPISPP-LRDSHPQAMQWNSTAFHQ 129
>sp|Q8MYE8|PAAF1_DICDI Probable proteasomal ATPase-associated factor 1 OS=Dictyostelium discoideum GN=paaf1 PE=3 SV=1 Length = 425
Score = 30.8 bits (68), Expect = 6.8 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Frame = +3
Query: 345 SITNSCASTP-------TPQSLQSRGYHLLLSPISELTTCWTSPTASFVMNLTKRRR 494 +I +CAST T SL RG +L+ + W PT+S + NLTK R Sbjct: 174 AIEGTCASTLVGHIGGITSASLVDRGRNLVSCSRDGTSKLWDIPTSSIISNLTKLSR 230
>sp|Q4R1S6|HBSAG_HBVA8 Large envelope protein OS=Hepatitis B virus genotype A3 (isolate Cameroon/CMR983/1994) GN=S PE=1 SV=1 Length = 400
Score = 30.8 bits (68), Expect = 6.8 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3
Query: 548 PSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSPAGRQ 432 P +R S P I+PP LR H +A +W SPA Q Sbjct: 92 PPPASANRQSGRQPTPISPP-LRDSHPQAIKWNSPAFHQ 129
>sp|P06902|H3L_CAIMO Histone H3-like OS=Cairina moschata PE=3 SV=2 Length = 136
Score = 30.8 bits (68), Expect = 6.8 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = -3
Query: 647 RAIPAGQLAHPTAHRDRLSLPAVGFLLAPHTCRP-SAQCH--HRHSSNSPLSIAPPPLRQ 477 R P QLA AH+ S PA+G + PH RP + H HR+ ++ L I P ++ Sbjct: 14 RKAPRKQLATKAAHK---SAPAMGGVKKPHCYRPGTVALHEIHRYQKSTELLICKLPFQR 70
Query: 476 I 474 + Sbjct: 71 L 71
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TIX1 |
Definition |
tr|A9TIX1|A9TIX1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
89 |
Score (bit) |
45.8 |
E-value |
0.002 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960613|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_O08, 5' (676 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TIX1|A9TIX1_PHYPA Predicted protein (Fragment) OS=Physcomit... 46 0.002 tr|A5BYA8|A5BYA8_VITVI Putative uncharacterized protein OS=Vitis... 43 0.016 tr|Q76DY1|Q76DY1_TOBAC AG-motif binding protein-3 OS=Nicotiana t... 43 0.021 tr|A7PKH7|A7PKH7_VITVI Chromosome chr15 scaffold_19, whole genom... 42 0.027 tr|A7QE32|A7QE32_VITVI Chromosome chr4 scaffold_83, whole genome... 41 0.080 tr|A7P7X0|A7P7X0_VITVI Chromosome chr3 scaffold_8, whole genome ... 40 0.18 tr|A5BCJ0|A5BCJ0_VITVI Putative uncharacterized protein (Chromos... 37 1.5 tr|B5HS19|B5HS19_9ACTO Beta-lactamase OS=Streptomyces sviceus AT... 36 1.9 tr|B8LKB3|B8LKB3_PICSI Putative uncharacterized protein OS=Picea... 35 3.3 tr|A7P754|A7P754_VITVI Chromosome chr9 scaffold_7, whole genome ... 35 3.3 tr|Q6Z8A3|Q6Z8A3_ORYSJ Putative uncharacterized protein P0017H11... 35 5.6 tr|Q0IML3|Q0IML3_ORYSJ Os12g0562800 protein OS=Oryza sativa subs... 35 5.6 tr|A9VC57|A9VC57_MONBE Predicted protein OS=Monosiga brevicollis... 35 5.7 tr|A9UZS3|A9UZS3_MONBE Predicted protein OS=Monosiga brevicollis... 35 5.7 tr|Q91C42|Q91C42_HBV Large envelope protein OS=Hepatitis B virus... 34 7.4 tr|A3BUA3|A3BUA3_ORYSJ Putative uncharacterized protein OS=Oryza... 34 7.4 tr|Q4T167|Q4T167_TETNG Chromosome 18 SCAF10707, whole genome sho... 34 9.7
>tr|A9TIX1|A9TIX1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_34911 PE=4 SV=1 Length = 243
Score = 45.8 bits (107), Expect = 0.002 Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 8/89 (8%) Frame = +2
Query: 425 FRIDDLLDFSN--------GXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQ 580 F IDDLLDFS G G +S IE K + E Sbjct: 6 FHIDDLLDFSCDDIGGPILGGHLPLSGVTTESSMIGGETSISSSPIEAKNETLEPALEDI 65
Query: 581 QLATTSGLCVPSDELADQLEWLSTFIEDS 667 ++ T LCVP D+LAD LEWLS+F+EDS Sbjct: 66 EVKTD--LCVPCDDLAD-LEWLSSFVEDS 91
>tr|A5BYA8|A5BYA8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037635 PE=4 SV=1 Length = 338
Score = 43.1 bits (100), Expect = 0.016 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 13/95 (13%) Frame = +2
Query: 422 NFRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLATT-- 595 +F IDDLLDF+NG + CG L R + + ++ L TT Sbjct: 44 DFSIDDLLDFTNGGIGEGLFQEEDEEDE--DKGCG----SLSPRRELTENDNSNLTTTTF 97
Query: 596 -----------SGLCVPSDELADQLEWLSTFIEDS 667 + L VP+D+LAD LEWLS F+EDS Sbjct: 98 SVKDEFPSVPATELTVPADDLAD-LEWLSHFVEDS 131
>tr|Q76DY1|Q76DY1_TOBAC AG-motif binding protein-3 OS=Nicotiana tabacum GN=AGP3 PE=2 SV=1 Length = 256
Score = 42.7 bits (99), Expect = 0.021 Identities = 33/96 (34%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Frame = +2
Query: 425 FRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLAT---- 592 FRIDDLLDFSN NSS + + ++ AT Sbjct: 12 FRIDDLLDFSNDEIFSIN----------SNSSSTTATPDSQHHHHQPHSDNSSAATANYY 61
Query: 593 -----------TSGLCVPSDELADQLEWLSTFIEDS 667 T LCVPSD++A+ LEWLS F+EDS Sbjct: 62 DALLPNCSDDFTDNLCVPSDDVAE-LEWLSNFVEDS 96
>tr|A7PKH7|A7PKH7_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019179001 PE=4 SV=1 Length = 270
Score = 42.4 bits (98), Expect = 0.027 Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +2
Query: 425 FRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLAT-TSG 601 FRIDDLLDF+N +S G L A Q + A T Sbjct: 12 FRIDDLLDFTNDELFSSTTTDSGNLPPPEIAS---GNRSLAASGNRDQPNTFHSADFTDD 68
Query: 602 LCVPSDELADQLEWLSTFIEDS 667 LCVPSD++A +LEWLS F++DS Sbjct: 69 LCVPSDDVA-ELEWLSNFVDDS 89
>tr|A7QE32|A7QE32_VITVI Chromosome chr4 scaffold_83, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036842001 PE=4 SV=1 Length = 338
Score = 40.8 bits (94), Expect = 0.080 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 13/95 (13%) Frame = +2
Query: 422 NFRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKADRCVAQEESQQLATT-- 595 +F IDDLLDF+NG + G G + + + + + ++ L TT Sbjct: 44 DFSIDDLLDFTNGGIGEGLFQEEDEE----DEDKGCGSLSPRGE--LTENDNSNLTTTTF 97
Query: 596 -----------SGLCVPSDELADQLEWLSTFIEDS 667 + L VP+D+LAD LEWLS F+EDS Sbjct: 98 SVKDEFPSVPATELTVPADDLAD-LEWLSHFVEDS 131
>tr|A7P7X0|A7P7X0_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035949001 PE=4 SV=1 Length = 274
Score = 39.7 bits (91), Expect = 0.18 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 5/90 (5%) Frame = +2
Query: 422 NFRIDDLLDFSNGXXXXXXXXXXXXXXXXGNSSCGDGGIELKAD-----RCVAQEESQQL 586 +F +DDL DFSNG S +E D + + Sbjct: 44 DFSVDDLFDFSNGGLGVGFEGEEEEEEEEEKDSFSWSSLERVDDDNSNSSSFSGTGDFES 103
Query: 587 ATTSGLCVPSDELADQLEWLSTFIEDSSYS 676 + GL VP+D+L + LEWLS F++DSS S Sbjct: 104 LSAGGLAVPADDL-EHLEWLSHFVDDSSAS 132
>tr|A5BCJ0|A5BCJ0_VITVI Putative uncharacterized protein (Chromosome chr4 scaffold_6, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00032414001 PE=4 SV=1 Length = 342
Score = 36.6 bits (83), Expect = 1.5 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Frame = +2
Query: 422 NFRIDDLLDFSNGXXXXXXXXXXXXXXXXGNS-------SCGD-GGIELKADRCVAQEES 577 +F I+DLLDFSN +S SC G E + + Sbjct: 35 HFIIEDLLDFSNDDAVITDGTFDTVTGTSTDSSTFTIVDSCNSVSGCEPQFAGDIGSRNY 94
Query: 578 QQLATTSGLCVPSDELADQLEWLSTFIEDS 667 +S LCVP D+LA +LEWLS +E+S Sbjct: 95 TDAHFSSDLCVPYDDLA-ELEWLSNIVEES 123
>tr|B5HS19|B5HS19_9ACTO Beta-lactamase OS=Streptomyces sviceus ATCC 29083 GN=SSEG_08863 PE=4 SV=1 Length = 382
Score = 36.2 bits (82), Expect = 1.9 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = -3
Query: 638 PAGQLAHPTAHRDRLSLPAVGFLL-APHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKA 462 PA A P+A DR + P+ + +P RP+ C S P + PPP RQ+ H+ Sbjct: 282 PASDDAPPSA--DRRTAPSGAYSSPSPRAIRPAKPCKEETWSPPPPTTHPPPRRQMPHRP 339
Query: 461 RRWRSPA 441 R +PA Sbjct: 340 LRHATPA 346
>tr|B8LKB3|B8LKB3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 321
Score = 35.4 bits (80), Expect = 3.3 Identities = 15/22 (68%), Positives = 20/22 (90%) Frame = +2
Query: 602 LCVPSDELADQLEWLSTFIEDS 667 LCVP+D L ++LEWLSTF++DS Sbjct: 105 LCVPADAL-EELEWLSTFVDDS 125
>tr|A7P754|A7P754_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034329001 PE=4 SV=1 Length = 329
Score = 35.4 bits (80), Expect = 3.3 Identities = 16/22 (72%), Positives = 19/22 (86%) Frame = +2
Query: 602 LCVPSDELADQLEWLSTFIEDS 667 LCVP DELA+ LEWLS F+E+S Sbjct: 100 LCVPCDELAE-LEWLSNFVEES 120
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