NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960626
Clone id TST39A01NGRL0007_O21
Library
Length 673
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_O21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCTCGTCTTGTCTTGTAACTGTTGGGATGCTTACCACAGCATGTCTCTTTGCGTGTGAG
ATTGTGTCTCTGGGCGTAACACCCATCGTTCCATGAGAGCCTGTGTGTGTGTGAGAGAGC
ATGCGGAGAGAGAGAGAGAGAGAGAGACCTCAATTTTCCTTCCTGAGTGAGGAACTGCCC
TTTTGCCTATGAGAGGCACAGTGCCACAGACCCAAAACTTGTGTGTGTTTGTGTGCGTGC
GGGGGAGAGAGAGAGAGTACAAACACACAAAAAAAGAACCAGAGCTCGCCATTTACTTCC
TCTGTGCAGTGCGGAGTACTCTGTATGGGATTGAATGAGGAAGAGGGACAAAAAAAGTGC
GTGTGCATTGTCTGTAGGTGAAAGAGTGGACATACCGATCTTTCTGTGTGCTTTAATGGA
AGATTTGCGTGCGATGTGAGCTGCTTTGATCTCTAGCACTCTTTACCAGATGCTCACTCA
TGTGCCTTCTTCAGCTTTGTGTAAACATGAGTTTTCCATCGGGGCCTCCATACAGGAAGA
GCACCATGGCTCTTCATATATTTTTCTGCAATCTTTCTGCCATAGCTTATCGACACCATA
GCTGAGAAAGGTGAACATACAACATGAGATTGTGTATGGCGTCAGAAAAGCGCACATACA
GCATGAGGTTGCA
■■Homology search results ■■ -
sp_hit_id Q8IZJ1
Definition sp|Q8IZJ1|UNC5B_HUMAN Netrin receptor UNC5B OS=Homo sapiens
Align length 52
Score (bit) 32.3
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960626|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_O21, 5'
         (673 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IZJ1|UNC5B_HUMAN Netrin receptor UNC5B OS=Homo sapiens GN=U...    32   2.3  
sp|Q56A04|EME2_MOUSE Probable crossover junction endonuclease EM...    32   3.1  
sp|Q09714|YA38_SCHPO Uncharacterized protein C18B11.08c OS=Schiz...    32   4.0  
sp|O08722|UNC5B_RAT Netrin receptor UNC5B OS=Rattus norvegicus G...    31   5.2  
sp|Q8K1S3|UNC5B_MOUSE Netrin receptor UNC5B OS=Mus musculus GN=U...    31   5.2  

>sp|Q8IZJ1|UNC5B_HUMAN Netrin receptor UNC5B OS=Homo sapiens
           GN=UNC5B PE=1 SV=2
          Length = 945

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 173 NCPFAYERHSATDPKLVC-VCVRAGERE----RVQTHKKRTRARHLLPLCSA 313
           +C F  ERHS    +L C +CVR  E E    ++ T    T A  L  LCSA
Sbjct: 791 HCTFTLERHSLASTELTCKICVRQVEGEGQIFQLHTTLAETPAGSLDTLCSA 842


>sp|Q56A04|EME2_MOUSE Probable crossover junction endonuclease EME2
           OS=Mus musculus GN=Eme2 PE=2 SV=2
          Length = 373

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
 Frame = -2

Query: 552 EPWCSSCMEAPMENSCLHKAEEGT*VSIW*RVLEIKAAHIARKSSIKAHRKIGMSTLSPT 373
           +P CS    +P   +  H A  G    +W   L  +     +KS  +AH +  +S     
Sbjct: 156 DPPCSIPWLSPKSLTRSHLAVIGLDAYLWSHQLSSQKTWQLKKSK-EAHARGAISWAEVE 214

Query: 372 DNAHALFLSLFLIQSHTEYSALHRGSKWRALVLFLCVCTLSLSPARTQTHTSFGSVALCL 193
           +        L L+Q H     L   S W+ L  ++C  T +LS   ++ H    + + C 
Sbjct: 215 E-------ILVLLQLHANLDVLLMAS-WQELSQYVCAFTRALSQLPSKQHRDSQAFSFCT 266

Query: 192 S--*AKGQFLTQEG 157
           +   A GQ +T++G
Sbjct: 267 AGHWASGQQVTRDG 280


>sp|Q09714|YA38_SCHPO Uncharacterized protein C18B11.08c
           OS=Schizosaccharomyces pombe GN=SPAC18B11.08c PE=2 SV=2
          Length = 95

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -2

Query: 426 KSSIKAHRKIGMSTLSPTDNAHALFLSLFLIQSHTEYSALHRGSKWRALVL-FLCVCTLS 250
           K+ +KA+ ++G+S +S      ALFL   LI              W A +L F  +   +
Sbjct: 16  KARVKANEEVGLSLVSTATCMAALFLRFKLI-------------AWVAFILTFSNLLNAN 62

Query: 249 LSPARTQTHTSFGSVALCLS*AKGQFLTQEGK 154
            SP+ + T  +F  +A  +S    QFL    K
Sbjct: 63  TSPSSSPTSMAFMGIAALVSTYLPQFLNTPNK 94


>sp|O08722|UNC5B_RAT Netrin receptor UNC5B OS=Rattus norvegicus
           GN=Unc5b PE=1 SV=1
          Length = 945

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 173 NCPFAYERHSATDPKLVC-VCVRAGERE----RVQTHKKRTRARHLLPLCSA 313
           +C F  ERHS    +  C VCVR  E E    ++ T    T A  L  LCSA
Sbjct: 791 HCTFTLERHSLASTEFTCKVCVRQVEGEGQIFQLHTTLAETPAGSLDALCSA 842


>sp|Q8K1S3|UNC5B_MOUSE Netrin receptor UNC5B OS=Mus musculus
           GN=Unc5b PE=1 SV=1
          Length = 945

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 173 NCPFAYERHSATDPKLVC-VCVRAGERE----RVQTHKKRTRARHLLPLCSA 313
           +C F  ERHS    +  C VCVR  E E    ++ T    T A  L  LCSA
Sbjct: 791 HCTFTLERHSLASTEFTCKVCVRQVEGEGQIFQLHTTLAETPAGSLDALCSA 842
tr_hit_id A5PJP9
Definition tr|A5PJP9|A5PJP9_BOVIN UNC5B protein OS=Bos taurus
Align length 56
Score (bit) 34.3
E-value 7.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960626|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_O21, 5'
         (673 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5PJP9|A5PJP9_BOVIN UNC5B protein OS=Bos taurus GN=UNC5B PE=2...    34   7.4  
tr|A9V1B8|A9V1B8_MONBE Predicted protein OS=Monosiga brevicollis...    34   9.6  
tr|A2SSX8|A2SSX8_METLZ Peptidase M20 OS=Methanocorpusculum labre...    34   9.6  

>tr|A5PJP9|A5PJP9_BOVIN UNC5B protein OS=Bos taurus GN=UNC5B PE=2
           SV=1
          Length = 945

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 173 NCPFAYERHSATDPKLVC-VCVRAGERE----RVQTHKKRTRARHLLPLCSAEYSV 325
           +C F  ERHS    +L C +CVR  E E    ++ T    T A  L  LCSA  SV
Sbjct: 791 HCTFTLERHSLASTELTCKICVRQVEGEGQIFQLHTTLAETPAGSLDALCSAPSSV 846


>tr|A9V1B8|A9V1B8_MONBE Predicted protein OS=Monosiga brevicollis
            GN=MBCDH17 PE=4 SV=1
          Length = 3811

 Score = 33.9 bits (76), Expect = 9.6
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = +1

Query: 202  CHRPKTCVCL---CACGGERESTNTQK-KNQSSPFTSSVQCGVLCMGLNEEE--GQKKCV 363
            C      VC+   CACGG+    + +  + +S     S  C     G N+ E  GQ +CV
Sbjct: 780  CSGESRGVCVGASCACGGQYSGASCEYFQCRSDECRFSDSCHDPAYGSNDAECNGQGRCV 839

Query: 364  CIVCR*KSGHTDLSVCFNGRFACDVSC 444
              VC    G  D S C       D +C
Sbjct: 840  AGVCECNDGFADESQCTRTGCETDEAC 866


>tr|A2SSX8|A2SSX8_METLZ Peptidase M20 OS=Methanocorpusculum
           labreanum (strain ATCC 43576 / DSM 4855 / Z)
           GN=Mlab_1265 PE=4 SV=1
          Length = 395

 Score = 33.9 bits (76), Expect = 9.6
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +2

Query: 368 LSVGERVDIPIFLCALMEDLRAM*AALISSTLYQMLTHVPSSALCKHEFSIGASIQEEHH 547
           +S GERV+I    C LM D+R          L ++ +H+P SA+        AS+     
Sbjct: 252 ISGGERVNIVAQKCTLMMDMRLPWGCDCDEILDEICSHIPKSAVLTPRTKANASLT---- 307

Query: 548 GSSYIFLQSFCHSLS 592
            S    +Q  C ++S
Sbjct: 308 ASDSFLVQKTCEAIS 322