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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960633
Clone id TST39A01NGRL0007_P04
Library
Length 696
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_P04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GACAATTGGAGCTCTTCTGTTGGGCGATCCTTCTTTGTCGAGATCGTGCAGAAGAAAAGC
ACATGAATGGCTACAGAAGCTTGAACATTCTTCTTGCGGGCAATCAAATCCCTTCACTCC
CTCTGCCGGCCAGCTGTCCGCGTACAGATACTGCCTTGCAAGCAGCCGATGCGCTCCTCC
TTTCTAATTGGAAAGAGATTATTATACCTTCTAGTTATCAAGGAGAGTGCTCAAGAGTTT
CTTCACAGCAGGCACATGTTCTCTTGTACTCCTGTGCTCAGATCTTTTTATACGTATCAA
GTAGTAGAGGATTGCAGAAAACAGATAAAGGACAAAACGACATTATTTTTCATAGATTCA
GGTTGGCATTTTCTCATGCATCCCTGCAAAGAGGGGTGCATGTGTGTTCGGGCGAGTCTC
AATGTTGTCTAGATTGCTGAAGCCTCCTTCAAAAGAGAGCAAGAGAAAGGGTGATGTTAA
GGAGGCATCATCACTACATGAACAACTGAGCCGGGTGAGGCACGAGGACTTAACGACCCC
TTGTACGCCACGCACACCTCGTCTAGAGAGGGCTCGTAATCTGCGTTGGCACTTGGTAGA
GCTCGACAAGTTTGAAGAGATACCCCGATTGTCTGTGTCTAGCTACAGTGTAGCCTCGGA
TGCTTCTCGTCAAGAGTTCTCGTCACCACCTGTGTC
■■Homology search results ■■ -
sp_hit_id A1L1F6
Definition sp|A1L1F6|IN80D_DANRE INO80 complex subunit D OS=Danio rerio
Align length 77
Score (bit) 33.1
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960633|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_P04, 5'
         (696 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1L1F6|IN80D_DANRE INO80 complex subunit D OS=Danio rerio GN=...    33   1.5  
sp|O31559|YFIQ_BACSU Uncharacterized protein yfiQ OS=Bacillus su...    31   5.5  
sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Pol...    30   9.5  
sp|Q88I82|DNAE2_PSEPK Error-prone DNA polymerase OS=Pseudomonas ...    30   9.5  

>sp|A1L1F6|IN80D_DANRE INO80 complex subunit D OS=Danio rerio
           GN=zgc:153949 PE=2 SV=1
          Length = 843

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 300 SSRGLQKTDKGQNDIIFHRFRLAFSHASLQRGVHVCSGESQCCLDC*SLLQKRA-----R 464
           +S  LQ T +G  D   ++ +L  +HA  ++ V   SG + CC D  S L K+      +
Sbjct: 223 TSSSLQDTHQGSKDSTDNKIKLDLNHAFDKKVVPAASGMAPCCDDTQSQLIKKCTVAMQQ 282

Query: 465 ERVMLRRHHHYMNN*AG 515
           +   L++ H  M+   G
Sbjct: 283 QAPCLKKLHRLMDQHKG 299


>sp|O31559|YFIQ_BACSU Uncharacterized protein yfiQ OS=Bacillus
           subtilis GN=yfiQ PE=3 SV=1
          Length = 362

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 198 IIIPSSYQGECSRVSSQQAHVLLYSCAQIFLYVSSSRGLQKTDKGQNDIIFHRFRLAFSH 377
           +++  SY GE   +SS++  ++LYS + IFL       ++   K    I  + F +   H
Sbjct: 232 LVVTVSYVGEIGMISSKRPDIMLYSTSMIFLCFHLFSKMKHVPKIMMFISNYSFSIYLLH 291

Query: 378 A 380
           A
Sbjct: 292 A 292


>sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Polk
           PE=1 SV=1
          Length = 852

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = -1

Query: 93  EECSSFCSHSCAFLLHDLDKEGSPNRRAPI 4
           EE  S C   CA L HDL KEG   R   I
Sbjct: 428 EEQYSLCQELCAELAHDLQKEGLKGRTVTI 457


>sp|Q88I82|DNAE2_PSEPK Error-prone DNA polymerase OS=Pseudomonas
           putida (strain KT2440) GN=dnaE2 PE=3 SV=1
          Length = 1033

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +1

Query: 244 HSRHMFSCTPVLR---SFYTY-QVVEDCRKQIKDKTTLFFIDSGWHFLMHPCKEGCMCVR 411
           H   +F+C  V      FY+  Q++++ R+Q  +   +    S W   + P  EG + +R
Sbjct: 743 HEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAIR 802

Query: 412 ASLNVV-*IAEASFKREQE 465
             L +V  +AEA  KR Q+
Sbjct: 803 MGLRLVRGLAEADAKRVQQ 821
tr_hit_id Q9S7B1
Definition tr|Q9S7B1|Q9S7B1_LOTJA Nodule inception protein OS=Lotus japonicus
Align length 85
Score (bit) 34.7
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960633|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_P04, 5'
         (696 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9S7B1|Q9S7B1_LOTJA Nodule inception protein OS=Lotus japonic...    35   6.0  

>tr|Q9S7B1|Q9S7B1_LOTJA Nodule inception protein OS=Lotus japonicus
           GN=nin PE=2 SV=1
          Length = 878

 Score = 34.7 bits (78), Expect = 6.0
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
 Frame = +3

Query: 36  CRDRAEEKHM---------NGYRSLNILLAGNQIPSLPLPASCPRXXXXXXXXXXXXXSN 188
           C D  E+K +            RSL+++L  ++  +LP+P+   +               
Sbjct: 398 CHDSEEQKQLLNSLSMVVQQACRSLHVVLVEDEY-TLPMPSHTSKEELEEEEITITNNHE 456

Query: 189 WKEIIIPSSYQGECSRVSSQQAHVL 263
            K  + PSS++ ECS+ SS  AH++
Sbjct: 457 QKLFVSPSSHESECSKESSWIAHMM 481