DK960634 |
Clone id |
TST39A01NGRL0007_P05 |
Library |
TST39 |
Length |
559 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_P05. 5' end sequence. |
Accession |
DK960634 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GTAGGTATTGCGTTAGGGTTCTTATTCCGCTGTCTCTCTGCTGCTGTTCTCATGGATTCT TCGCGGGCGCTTCTGGAGACTGCTCGCGAGCTATACGGACGGAGGCAAGCTCCTTCCATG GCCCTGTCGAGCAGTCTCTTGTCTGGCCAGTCCTACTACACAGTCGAGTCCCTTGAAGGT GCTTCCGCTCTTCCACCTCTCAAACCGAGCTTTGCTGCCGCAGACCGGGAATTCCTTTTG CGCTTGGATGCACATAAAAGAGCTTTGGCTGCTGAAAGAGAATCATTAGATGCCGAAAAG AGACTTCTTGCAGCGGACAGAGAAGCTTTGGTGCGTTCGGATCCGAGGTTAGCAGATTTG TTGCCGCCTGTACCAGGTGTAGATGCCCGAACAAGGCTTGATGGGTTACCCGCTGTGGAT GCTAGCAGAAGGCTTTTAGTCGATGAGTTGCATGCACTTGACTCACGTTCCAGACTTCAT GGGCTTGATGTACGTCCTAATGACGATGTACTTGACTCGCGGTTTAGAATTCATGGGCTG GATGTGCGTTCTCATGACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7VYB7 |
Definition |
sp|Q7VYB7|LPXB_BORPE Lipid-A-disaccharide synthase OS=Bordetella pertussis |
Align length |
91 |
Score (bit) |
31.6 |
E-value |
2.8 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B2WW54 |
Definition |
tr|B2WW54|B2WW54_9ACTO Transcriptional activator OS=Streptomyces albus |
Align length |
101 |
Score (bit) |
45.1 |
E-value |
0.003 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960634|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_P05, 5' (559 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B2WW54|B2WW54_9ACTO Transcriptional activator OS=Streptomyces... 45 0.003 tr|Q1ZXH1|Q1ZXH1_DICDI Putative uncharacterized protein OS=Dicty... 40 0.11 tr|A4R2P3|A4R2P3_MAGGR Putative uncharacterized protein OS=Magna... 39 0.15 tr|B2K210|B2K210_YERPB Putative uncharacterized protein OS=Yersi... 37 0.56 tr|A3P5Y3|A3P5Y3_BURP0 Non-ribosomal peptide synthase OS=Burkhol... 37 0.56 tr|A2W6L8|A2W6L8_9BURK ATPase with chaperone activity ATP-bindin... 37 0.56 tr|A6WAX7|A6WAX7_KINRD Transcriptional regulator, GntR family OS... 37 0.95 tr|B7DVI3|B7DVI3_9BACL Chromosome segregation protein SMC OS=Ali... 37 0.95 tr|Q1DCD7|Q1DCD7_MYXXD Response regulator receiver domain/DnaJ d... 36 1.2 tr|Q2GN61|Q2GN61_CHAGB Putative uncharacterized protein OS=Chaet... 36 1.2 tr|Q66B94|Q66B94_YERPS Putative uncharacterized protein OS=Yersi... 36 1.6 tr|B8JEF0|B8JEF0_9DELT Putative uncharacterized protein OS=Anaer... 36 1.6 tr|A9VAF3|A9VAF3_MONBE Predicted protein OS=Monosiga brevicollis... 36 1.6 tr|Q8XT09|Q8XT09_RALSO Probable transcription regulator protein ... 35 2.1 tr|Q2NAU5|Q2NAU5_ERYLH tRNA delta(2)-isopentenylpyrophosphate tr... 35 2.1 tr|A1R484|A1R484_ARTAT Putative MazG family protein OS=Arthrobac... 35 2.1 tr|B1G105|B1G105_9BURK Sensor protein OS=Burkholderia graminis C... 35 2.1 tr|Q850X8|Q850X8_ORYSJ Putative uncharacterized protein OSJNBb00... 35 2.1 tr|Q72J57|Q72J57_THET2 Putative uncharacterized protein OS=Therm... 35 2.8 tr|Q5SIS6|Q5SIS6_THET8 Exonuclease SbcC OS=Thermus thermophilus ... 35 2.8 tr|Q3JXL8|Q3JXL8_BURP1 Putative uncharacterized protein OS=Burkh... 35 2.8 tr|A4LU41|A4LU41_BURPS Non-ribosomal peptide synthase OS=Burkhol... 35 2.8 tr|A3BSP0|A3BSP0_ORYSJ Putative uncharacterized protein OS=Oryza... 35 2.8 tr|B6KLC5|B6KLC5_TOXGO Myosin heavy chain, putative OS=Toxoplasm... 35 2.8 tr|Q7TW21|Q7TW21_MYCBO PUTATIVE TRANSPOSASE OS=Mycobacterium bov... 35 3.6 tr|Q603P5|Q603P5_METCA Putative membrane protein OS=Methylococcu... 35 3.6 tr|O06367|O06367_MYCTU PROBABLE TRANSPOSASE OS=Mycobacterium tub... 35 3.6 tr|A5U8W4|A5U8W4_MYCTA IS1245-like transposase OS=Mycobacterium ... 35 3.6 tr|A1KPW9|A1KPW9_MYCBP Putative transposase OS=Mycobacterium bov... 35 3.6 tr|Q7D557|Q7D557_MYCTU IS1553, transposase OS=Mycobacterium tube... 35 3.6
>tr|B2WW54|B2WW54_9ACTO Transcriptional activator OS=Streptomyces albus GN=ozmU PE=4 SV=1 Length = 929
Score = 45.1 bits (105), Expect = 0.003 Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 9/101 (8%) Frame = +1
Query: 202 KPSFAAADREFLLRLDAHKRALAAERESLDAEKRLLAADREALV-----RSDPRLADLLP 366 +P+ REFLL L R + + A R L ADR+ LV R+ ++ DLLP Sbjct: 368 EPTLLEVLREFLLGLGVPPRRIPESASAASALFRSLCADRQLLVVLDNARASEQVRDLLP 427
Query: 367 P----VPGVDARTRLDGLPAVDASRRLLVDELHALDSRSRL 477 V V +R RL GL A DA+R + VD L DS + L Sbjct: 428 GGARCVTVVTSRYRLRGLIASDAARPVPVDVLEPDDSAALL 468
>tr|Q1ZXH1|Q1ZXH1_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0233267 PE=4 SV=1 Length = 1646
Score = 39.7 bits (91), Expect = 0.11 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +1
Query: 355 DLLPPVPGVDARTRLDGLPAVDASRRL-LVDELHALDSRSRLHGLDVRPNDDVLDSRFRI 531 DLL V G+D R DGL VD+ R+ VD L +D R+ G+D D +DS R+ Sbjct: 1295 DLLDCVDGIDGLDRADGLDGVDSVDRVDRVDSLDRVDGLDRVDGVD---RVDRVDSVDRL 1351
Query: 532 HGLD 543 GLD Sbjct: 1352 DGLD 1355
>tr|A4R2P3|A4R2P3_MAGGR Putative uncharacterized protein OS=Magnaporthe grisea GN=MGG_02474 PE=4 SV=1 Length = 380
Score = 39.3 bits (90), Expect = 0.15 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = -1
Query: 550 NAHPAHEF*TASQVHRH*DVHQAHEVWNVSQVHATHRLKA 431 + H +H A +VH H +VH H++ +V VHA H L+A Sbjct: 36 DVHESHSVHEAHEVHEHHEVHDTHDLPDVHDVHAVHELQA 75
>tr|B2K210|B2K210_YERPB Putative uncharacterized protein OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1926 PE=4 SV=1 Length = 101
Score = 37.4 bits (85), Expect = 0.56 Identities = 21/68 (30%), Positives = 28/68 (41%) Frame = -1
Query: 553 ENAHPAHEF*TASQVHRH*DVHQAHEVWNVSQVHATHRLKAFC*HPQRVTHQALFGHLHL 374 + AH AH+ A Q H+ HQAH+ Q H H +A H HQA H + Sbjct: 25 QQAHQAHQAHQAHQAHQAHQAHQAHQAHQAHQAHQAH--QAHQAHQAHQAHQAHQAHQVI 82
Query: 373 VQAATNLL 350 T + Sbjct: 83 AYGVTEFI 90
>tr|A3P5Y3|A3P5Y3_BURP0 Non-ribosomal peptide synthase OS=Burkholderia pseudomallei (strain 1106a) GN=BURPS1106A_A1709 PE=3 SV=1 Length = 4265
Score = 37.4 bits (85), Expect = 0.56 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = -1
Query: 556 HENAHPAHEF*TASQVHRH*DVHQAHEVWNVSQVHATHRLKAFC*HPQRVTHQA 395 HE AH AHE +VH + H+ HEV V +VH H + H H+A Sbjct: 1574 HE-AHEAHEVHEVHEVHEAHEAHEVHEVHEVHEVHEVHEM-----HEMHDVHEA 1621
Score = 37.0 bits (84), Expect = 0.73 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = -1
Query: 556 HENAHPAHEF*TASQVHRH*DVHQAHEVWNVSQVHATHRL 437 HE AH HE A +VH +VH+AHE V +VH H + Sbjct: 1568 HE-AHEVHEAHEAHEVHEVHEVHEAHEAHEVHEVHEVHEV 1606
Score = 34.3 bits (77), Expect = 4.7 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1
Query: 556 HENAHPAHEF*TASQVHRH*DVHQAHEVWNVSQVHATHRL 437 HE AH AHE A + H +VH+ HE +VH H + Sbjct: 1565 HE-AHEAHEVHEAHEAHEVHEVHEVHEAHEAHEVHEVHEV 1603
Score = 34.3 bits (77), Expect = 4.7 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -1
Query: 556 HENAHPAHEF*TASQVHRH*DVHQAHEVWNVSQVHATHRLKA 431 HE H HE A +VH +VH+ HEV + ++H H +A Sbjct: 1583 HE-VHEVHEAHEAHEVHEVHEVHEVHEVHEMHEMHDVHEARA 1623
Score = 33.5 bits (75), Expect = 8.1 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = -1
Query: 556 HENAHPAHEF*TASQVHRH*DVHQAHEVWNVSQVHATHRLKAFC*HPQRVTHQALFGH-L 380 HE H HE A +VH + H+ HEV V + H H + H H+ H + Sbjct: 1559 HE-VHEVHEAHEAHEVHEAHEAHEVHEVHEVHEAHEAHEVHEV--HEVHEVHEVHEMHEM 1615
Query: 379 HLVQAATNLLTSD 341 H V A L D Sbjct: 1616 HDVHEARAQLADD 1628
>tr|A2W6L8|A2W6L8_9BURK ATPase with chaperone activity ATP-binding subunit OS=Burkholderia dolosa AUO158 GN=BDAG_00298 PE=4 SV=1 Length = 885
Score = 37.4 bits (85), Expect = 0.56 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 12/84 (14%) Frame = +1
Query: 247 DAHKRALAA--ERESLDAEKRLLAADREALVRSDPRLADLLPPVPGVDARTRLDGL---- 408 D +R AA E E LD E+R+ D +A+ R+ R+A+L VDA R Sbjct: 444 DVRQRLQAAQVEHELLDHERRIGLGDADAVARAHARIAELEREAASVDACWRAQAAAAHA 503
Query: 409 ------PAVDASRRLLVDELHALD 462 A DA R DELHAL+ Sbjct: 504 LLSAREAAGDAGDRAPGDELHALE 527
>tr|A6WAX7|A6WAX7_KINRD Transcriptional regulator, GntR family OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=Krad_2490 PE=4 SV=1 Length = 240
Score = 36.6 bits (83), Expect = 0.95 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 16/133 (12%) Frame = +1
Query: 196 PLKPSFAAADREFLLRLDAHK------------RALAAERESLDAEKRLLAADREALVRS 339 PL+ + ++ L+ LDAH+ R L R SLD LAA+R R+ Sbjct: 53 PLREALRRLKQQGLVELDAHRDARVSALDATEARDLLEMRRSLDPLAAALAAER----RT 108
Query: 340 DPRLADLLPPVPGVDARTRLDGLPAVD--ASRRLLVDELHALDSRSRLHGLDVRPNDDVL 513 LA++ + G+DA L G P D A R H R+ + + + D + Sbjct: 109 KAELAEMRAALEGLDA---LPGKPTWDQLAHHR----RFHTAIYRASHNAILIESLDGLW 161
Query: 514 DS--RFRIHGLDV 546 D+ R+R+HGL V Sbjct: 162 DTADRYRLHGLQV 174
>tr|B7DVI3|B7DVI3_9BACL Chromosome segregation protein SMC OS=Alicyclobacillus acidocaldarius LAA1 GN=AaLAA1DRAFT_3008 PE=4 SV=1 Length = 1190
Score = 36.6 bits (83), Expect = 0.95 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Frame = +1
Query: 247 DAHKRALAAERESLDAEKRLLAADREALVRSDPRLADLLPPVPGVDARTRLDGLPAVDAS 426 D + LA E+LD E+ LAADR + R + DLL +A + L A A Sbjct: 742 DFQLKTLAERMEALDWEREALAADRSQIERRKAEVRDLL-----AEAEDEVARLTAAIAE 796
Query: 427 RRLLVDELHALDS-----RSRLHGLDV 492 RR D L AL+S + RL GL + Sbjct: 797 RR---DRLAALESELAEAKERLTGLRI 820
>tr|Q1DCD7|Q1DCD7_MYXXD Response regulator receiver domain/DnaJ domain protein OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_1429 PE=4 SV=1 Length = 1850
Score = 36.2 bits (82), Expect = 1.2 Identities = 44/150 (29%), Positives = 60/150 (40%), Gaps = 25/150 (16%) Frame = +1
Query: 61 SRAL--LETARELYGRRQAPSMAXXXXXXXGQSYYTVESLEGASALPP------------ 198 SRAL +ET EL GR QA + A + +S A AL Sbjct: 756 SRALEEVETRAELAGRAQAEAEARAEQAARALAESEAQSERIARALADAEARVQAENGAD 815
Query: 199 ---------LKPSFAAADREFLLRLDAHKRALAAERESLDAEKRLLAADREALVRS--DP 345 L + A A+ E R+DA R +AE +A R A+ EA VR+ D Sbjct: 816 ARVESVATALAEAEARAEIESAARVDAEARLASAEAALAEASAR---AEIEATVRAEADA 872
Query: 346 RLADLLPPVPGVDARTRLDGLPAVDASRRL 435 R+ + + DAR ++ VDA RL Sbjct: 873 RVESVATALTEADARAEIESAARVDAEARL 902
>tr|Q2GN61|Q2GN61_CHAGB Putative uncharacterized protein OS=Chaetomium globosum GN=CHGG_10593 PE=4 SV=1 Length = 1130
Score = 36.2 bits (82), Expect = 1.2 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 4/94 (4%) Frame = +1
Query: 235 LLRLDAHKRALAAERE-SLDAEKRLLAADREALVRSDPRLADL---LPPVPGVDARTRLD 402 L+R H R L A+ S D+ +LL + L+ L P+ G+D R Sbjct: 959 LMRTHPHLRELLAQPIWSFDSRGKLLPSSTRPLLYHHAGRVLLNFAREPLLGLDGVRRAA 1018
Query: 403 GLPAVDASRRLLVDELHALDSRSRLHGLDVRPND 504 GLPA+D ++R +D + + RS++ LD RP D Sbjct: 1019 GLPALDDAQRRALDVVEEIAKRSQI-VLDARPGD 1051
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