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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960638
Clone id TST39A01NGRL0007_P09
Library
Length 627
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_P09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGCCAACAAAGCACGGAGCCTCAAGATAATTTGGAAGAGCAGTATGCCTTAGGAAGTGC
TGGTGATAATGCTGAGCAGCTTTCGAGCCAATCCACCATCATCGTCGACCCTTTCCTATT
CCCCCTTCTTCATCGCCAACACTAAGCTTCTCCATGGCCCCCACTACCATCGCCCCTTAC
TGTATGGTCGATGTCATGAAGTCCTTATATGCTACAGTTTGCAGGGAAGCTTCAGTATCC
AAGACCGTACAACCTTCAGCAGACATTCTCCTTTTGAGTGCATTTACACAGATTTCAGCT
ATGCCATCTGTGGAGAAAGCAGCTCTCGTTTCTCCATAATCTGCAAGAGTTATGGAGTAA
ACGACAATGAGACCTCAGCGGATTCAAGCAGGTATGAATTGTACAATGAAGAGCCTGCAC
CCTTTCGCAGAAAATATGACTCTACAGGAATCTCCAACAGAGAGGCTTTACGAGGAGGTG
AGGGCCATGGTCCATCAGAAAACTTTGACAGAAGGCCTAGGTCTCTGCACAGAAGCATGA
GCAGCCTGGAGGGCTTTGGTGGGGAGCCTTCACCCGACAACGGCTACCAGGGTACCGGAA
GCTTGAACAGAAAATTTCCTGTTTCAA
■■Homology search results ■■ -
sp_hit_id P19970
Definition sp|P19970|FRQ_NEUCR Frequency clock protein OS=Neurospora crassa
Align length 42
Score (bit) 31.6
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960638|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_P09, 5'
         (627 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19970|FRQ_NEUCR Frequency clock protein OS=Neurospora crassa...    32   3.5  
sp|Q04953|FLBE_CAUCR Protein flbE OS=Caulobacter crescentus GN=f...    31   4.5  
sp|Q9NQV8|PRDM8_HUMAN PR domain zinc finger protein 8 OS=Homo sa...    31   5.9  
sp|O88322|NID2_MOUSE Nidogen-2 OS=Mus musculus GN=Nid2 PE=1 SV=1       30   7.7  
sp|Q5KMS0|ATG2_CRYNE Autophagy-related protein 2 OS=Cryptococcus...    30   7.7  

>sp|P19970|FRQ_NEUCR Frequency clock protein OS=Neurospora crassa
           GN=frq PE=1 SV=3
          Length = 989

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 426 RRKYDSTGISNREALRGGEGHGPSENFDRRPRSLHRSMSSLE 551
           RRK   T  ++ E  R G    PS+ F  +P  +HR+ SS+E
Sbjct: 563 RRKKRKTQQASSEIGRFGPSRSPSDTFHYKPMFVHRNSSSIE 604


>sp|Q04953|FLBE_CAUCR Protein flbE OS=Caulobacter crescentus GN=flbE
           PE=4 SV=1
          Length = 212

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 341 DYGETRAAFSTDGIAEICVNALKRRMSAEG 252
           D+G+ RAAF  DG A+    AL+  ++AEG
Sbjct: 175 DWGDGRAAFDPDGAAQRVAEALEAAIAAEG 204


>sp|Q9NQV8|PRDM8_HUMAN PR domain zinc finger protein 8 OS=Homo
           sapiens GN=PRDM8 PE=2 SV=3
          Length = 689

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 18/74 (24%)
 Frame = +3

Query: 453 SNREALRGGEGHGPSENFDRRPRSLH-----------RSMSSLEGFGG-------EPSPD 578
           SN  A  GG    PS +F    R L            +S+SS  G GG       E SPD
Sbjct: 244 SNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAELSPD 303

Query: 579 NGYQGTGSLNRKFP 620
               G G   RKFP
Sbjct: 304 GIATGGGKGKRKFP 317


>sp|O88322|NID2_MOUSE Nidogen-2 OS=Mus musculus GN=Nid2 PE=1 SV=1
          Length = 1403

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 189  RCHEVLICYSLQGSFSIQDRTTFSRHSPFEC 281
            RCHE  ICY+  GSFS + +  + R   F C
Sbjct: 923  RCHEAAICYNTPGSFSCRCQPGY-RGDGFHC 952


>sp|Q5KMS0|ATG2_CRYNE Autophagy-related protein 2 OS=Cryptococcus
            neoformans GN=ATG2 PE=3 SV=1
          Length = 1935

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
 Frame = +3

Query: 273  FECIYTDFSYAICGESSSRFSIICKSYGVNDNETSADSSRYEL-YNEEPAPFRRKYDSTG 449
            F  I TDF +++     + F+++ +    +D +   D   + L Y +      + Y S  
Sbjct: 1248 FAEIATDFGHSL---DENAFNLLPEIVSHSDTDMIEDDLPHNLDYLDHATRISKHYPSMD 1304

Query: 450  ISNREALRGGEGHGPSENFDRRPRSLHRSMSSLEGFGGEPSPDNGY-QGTGSLN 608
             +  E LR    H P E  +        S  ++  FGGE   + GY +G   LN
Sbjct: 1305 RTTGENLRAW--HTPEEGLEEGEWENGESGETIRAFGGEIEEEEGYWEGLPILN 1356
tr_hit_id Q1JTC6
Definition tr|Q1JTC6|Q1JTC6_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii RH
Align length 132
Score (bit) 36.2
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960638|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_P09, 5'
         (627 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1JTC6|Q1JTC6_TOXGO Putative uncharacterized protein OS=Toxop...    36   1.6  
tr|Q9SJN8|Q9SJN8_ARATH Expressed protein (At2g15440) (Putative u...    36   2.1  
tr|B3LAB2|B3LAB2_PLAKH Putative uncharacterized protein OS=Plasm...    35   4.8  
tr|Q0W4M7|Q0W4M7_UNCMA Putative uncharacterized protein OS=Uncul...    35   4.8  
tr|Q7QK54|Q7QK54_ANOGA AGAP002157-PA OS=Anopheles gambiae GN=AGA...    34   6.2  
tr|Q17E25|Q17E25_AEDAE Putative uncharacterized protein OS=Aedes...    34   6.2  
tr|A9V0C1|A9V0C1_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.2  
tr|B5DTA7|B5DTA7_DROPS GA29143 OS=Drosophila pseudoobscura pseud...    34   6.3  

>tr|Q1JTC6|Q1JTC6_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii RH GN=TgIa.0950 PE=4 SV=1
          Length = 525

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 4/132 (3%)
 Frame = +3

Query: 216 SLQGSFSIQDRTTFSRHSPFECIYTDFSYAICGESSSRFSIICKSYGVNDNETSADSSRY 395
           S   SFS    ++    S         S A    SSS +S  C S     +      S  
Sbjct: 72  SCSSSFSASCFSSLPPSSSSSSSSASSSSASSSSSSSLYSSTCSS-----SSCCVRKSEP 126

Query: 396 ELYNEEPAPFRR--KYDSTGISNREALRGGEGH-GPSENFDRRPR-SLHRSMSSLEGFGG 563
            L+ +E + FR    +    + +R+A R  E   GP   F         RS SSL  F  
Sbjct: 127 PLFRQEASQFRAALSFSQVTVDSRQASRDFEAKPGPLPGFSAASSYQTARSFSSLPSFFS 186

Query: 564 EPSPDNGYQGTG 599
             SPD+ Y G G
Sbjct: 187 LSSPDSAYDGIG 198


>tr|Q9SJN8|Q9SJN8_ARATH Expressed protein (At2g15440) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=At2g15440 PE=2 SV=1
          Length = 329

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 27/79 (34%), Positives = 39/79 (49%)
 Frame = +3

Query: 39  SSMP*EVLVIMLSSFRANPPSSSTLSYSPFFIANTKLLHGPHYHRPLLYGRCHEVLICYS 218
           SS+P  VL  +L    ++PP++S        I+N    HGP  +  L++G  HE L    
Sbjct: 72  SSLPPPVLAALLHYTSSSPPNTSMSFLELSTISNIIHSHGPACNL-LIFGLTHESL---- 126

Query: 219 LQGSFSIQDRTTFSRHSPF 275
           L  S + Q RT F   SP+
Sbjct: 127 LWRSINFQGRTVFVDESPY 145


>tr|B3LAB2|B3LAB2_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_132240 PE=4
           SV=1
          Length = 646

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 468 LRGGEGH-GPSENFDRRPRSLHRSMSSLEGFGGEPSPDNGYQGTGSLNRKFPVS 626
           LRGG G+ GPS N+  R +   R  +   G GG P+      G    N  FPVS
Sbjct: 489 LRGGHGYVGPSRNYGDRGK---RHSNHNRGRGGNPASKKARMGANGANYGFPVS 539


>tr|Q0W4M7|Q0W4M7_UNCMA Putative uncharacterized protein
           OS=Uncultured methanogenic archaeon RC-I GN=UNCMA_15590
           PE=4 SV=1
          Length = 292

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 459 REALRGGEGHGPSENFDRRPRSLHRSMSSLEGFG---GEPSPDNGYQGTGS 602
           RE  R  +G   SE  DR P ++   M SL+  G   G P P  GY+ T +
Sbjct: 20  REKGRAIKGEEISERIDRNPGTVRNQMQSLKALGLVEGVPGPKGGYKATSA 70


>tr|Q7QK54|Q7QK54_ANOGA AGAP002157-PA OS=Anopheles gambiae
           GN=AGAP002157 PE=4 SV=4
          Length = 1070

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 189 RCHEVLICYSLQGSFSIQDRTTFSRHSPFECIYTD---FSYAICGESSSRFSIICKSYGV 359
           RC   +IC++ +GS+  Q +  F R+S  EC+ +D       IC +++     +CK  G 
Sbjct: 494 RCGANMICHNTEGSYDCQCKAGFIRNSSRECLPSDRMCLDGTICDQNA-----VCKHAGN 548

Query: 360 N 362
           N
Sbjct: 549 N 549


>tr|Q17E25|Q17E25_AEDAE Putative uncharacterized protein OS=Aedes
            aegypti GN=AAEL003955 PE=4 SV=1
          Length = 1823

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = +3

Query: 396  ELYNEEPAPFRRKYDSTGISNREALRGGE-------GHGPSENFDRRPRSLHRSMSSLEG 554
            EL +  PAP ++ Y  T I ++ A +GG        G  P+ NF R  +S H+  +  +G
Sbjct: 1652 ELDSPPPAPVKQSYKPTKILSKGAKKGGGGTFDNLFGGSPANNFKRGKKSAHKRKAKAKG 1711


>tr|A9V0C1|A9V0C1_MONBE Predicted protein OS=Monosiga brevicollis
           GN=32562 PE=4 SV=1
          Length = 2159

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
 Frame = +3

Query: 357 VNDNETSADSSRYELYNE---------EPAPFRRKYDSTGISNREALRGGEGHGPSENFD 509
           V+ +E S D +  +L N+         E  P R+ + + G+S       G G  P     
Sbjct: 463 VDKHEHSPDGTDSDLLNDSTDSIHPEQEHTPERKSHLNNGVSVVPHTPAGAGRHPRSETS 522

Query: 510 RRPRSLHRSMSSLEGFGGE---PSPDNGYQGTGSLNRKFP 620
             P SLHR+ S   G         P   Y  + +LNR  P
Sbjct: 523 GSPSSLHRNKSPQPGMSRSIHGSRPARSYPASPALNRSAP 562


>tr|B5DTA7|B5DTA7_DROPS GA29143 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA29143 PE=4 SV=1
          Length = 816

 Score = 34.3 bits (77), Expect = 6.3
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
 Frame = -1

Query: 609 CSSFRYPGSRCRVKAPHQSPPGCS-CFCAET*AFCQSFLMDHGP----HLLVKPLCWRFL 445
           C+  + P  R  V     + P C  C  A     C+ FL   GP     +    LCWR L
Sbjct: 406 CTKEKNPRVRLMVHNDSSAQPPCRRCNGAHNLEDCKQFLELEGPGRWNFVRENKLCWRCL 465

Query: 444 *SHIFCERVQALHCTIHTCLNPLRSHCRLLHNS 346
             H          C++  C    R H  LLHNS
Sbjct: 466 GKHFIRHCKSTRVCSVDGC---SRKHHFLLHNS 495