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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960642
Clone id TST39A01NGRL0007_P13
Library
Length 622
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_P13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCCGTCTCTCTCTCTCTCTCTCTGCGCTTCCTTCAAGAAGGGGGCACAGACACACAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACAAAGCTCGTATGCATCAGAC
GTTTCTGTTACATTGCACTGCTTTTCGTGTGGCTTGCGTGGTGGCACGGGTGTGTTCGTA
AAGAACGCATTGAACGCAATTCAGCTCCTAGCCTCCTCCTTGCTCTTAGTTCTGCGTGTC
GTTTTTGATCGAGGAGCCACCTCCTTGGTGCCCGCAAAAACCCAATTCAACTCTTCTCGT
CCTAGTTCTGCGTGTTGTTTTGCGGTGGTAACGCGGTGCTTTGTATTTGGTTCTGCATTT
TTGGTGGCATCTTGGAAGGCTCTGCTTTTCTGCAAGGCTTTTGTGGAGTCGTGCATTATA
TTTGGATGCACATTGGACATGGTTGTTTTTTACCTCACCATAGAGTTTTGACAGAACCCA
GAATTTGATAGTGCCTTGAAGCAGCAGGATTGATTTACATCCTTGTTGAACCTTCTTCTG
AAAATCTGGTTCCACAGTTGTGGCATTTTGTCACAGAATAATTGCAGCATTCTGGTGTAT
TCAGCACCATGAACCACATCAT
■■Homology search results ■■ -
sp_hit_id P57621
Definition sp|P57621|Y556_BUCAI UPF0265 protein BU556 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
Align length 59
Score (bit) 31.6
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960642|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_P13, 5'
         (622 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57621|Y556_BUCAI UPF0265 protein BU556 OS=Buchnera aphidicol...    32   3.4  
sp|P58002|IF2_LACLA Translation initiation factor IF-2 OS=Lactoc...    31   4.5  
sp|O84301|HEM3_CHLTR Probable porphobilinogen deaminase OS=Chlam...    30   7.7  
sp|A6QH29|EBPS_STAAE Elastin-binding protein ebpS OS=Staphylococ...    30   7.7  
sp|Q5HFU2|EBPS_STAAC Elastin-binding protein ebpS OS=Staphylococ...    30   7.7  
sp|Q2FYF1|EBPS_STAA8 Elastin-binding protein ebpS OS=Staphylococ...    30   7.7  
sp|Q2FGW1|EBPS_STAA3 Elastin-binding protein ebpS OS=Staphylococ...    30   7.7  

>sp|P57621|Y556_BUCAI UPF0265 protein BU556 OS=Buchnera aphidicola
           subsp. Acyrthosiphon pisum GN=BU556 PE=3 SV=1
          Length = 102

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 546 DFQKKVQQGCKSILLLQGTIKFWVLSKLYGEVKNNHVQCASKYNARLHKSLAEKQSLPR 370
           D +KK++   K ILLL   I++  L   Y E+K       S Y  R+   + +   L +
Sbjct: 30  DIEKKIRDNQKRILLLDNLIQYITLDMNYEEIKKIIFMMKSDYEDRIDDYIVKNAELSK 88


>sp|P58002|IF2_LACLA Translation initiation factor IF-2
           OS=Lactococcus lactis subsp. lactis GN=infB PE=3 SV=1
          Length = 944

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 1/126 (0%)
 Frame = -3

Query: 524 KDVNQSCCFKALSNSGFCQNSMVR*KTTMSNVHPNIMHDSTKALQKSRAFQDAT-KNAEP 348
           K +NQ      L+N+     +        S+        + K +Q ++   D T K AE 
Sbjct: 5   KRINQIAKETGLTNAELVSAAQTLGFEVKSHSSSVTAEQAEKIIQSAKTGTDQTAKVAEK 64

Query: 347 NTKHRVTTAKQHAELGREELNWVFAGTKEVAPRSKTTRRTKSKEEARS*IAFNAFFTNTP 168
             K     A + A+  +E+    FAG K V        R K+KEEA          T  P
Sbjct: 65  PVKKSQPKAAESAKKNKEDHPRTFAG-KAVVEDPAILARIKAKEEAEKAAKVEVASTEHP 123

Query: 167 VPPRKP 150
           V   KP
Sbjct: 124 VVTEKP 129


>sp|O84301|HEM3_CHLTR Probable porphobilinogen deaminase
           OS=Chlamydia trachomatis GN=hemC PE=3 SV=1
          Length = 241

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 617 VVHGAEYTRMLQLFCDKMPQLWNQIFRRRFNKDVNQSCCFKALSNSGF 474
           V+   E  R LQ+F    P+LW QI       D++Q     A+ N+GF
Sbjct: 32  VLQAHECLRKLQIF---FPRLWGQIITTTTQGDLDQETPLCAVENTGF 76


>sp|A6QH29|EBPS_STAAE Elastin-binding protein ebpS OS=Staphylococcus
           aureus (strain Newman) GN=ebpS PE=1 SV=1
          Length = 486

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 440 MSNVHPNIMHDSTKALQKSRAFQDATKNAEPNTKHRVTTAKQHAELGREELNWVFAGTKE 261
           M   HP  + D+ K         D  KNAE NT+H   + K  AE  ++   +   G   
Sbjct: 125 MDKSHPEPIEDNDK--------HDTIKNAENNTEHSTVSDKSEAEQSQQPKPYFTTG--- 173

Query: 260 VAPRSKTTRRTKSKEEAR 207
            A +S+T++     +  +
Sbjct: 174 -ANQSETSKNEHDNDSVK 190


>sp|Q5HFU2|EBPS_STAAC Elastin-binding protein ebpS OS=Staphylococcus
           aureus (strain COL) GN=ebpS PE=3 SV=3
          Length = 486

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 440 MSNVHPNIMHDSTKALQKSRAFQDATKNAEPNTKHRVTTAKQHAELGREELNWVFAGTKE 261
           M   HP  + D+ K         D  KNAE NT+H   + K  AE  ++   +   G   
Sbjct: 125 MDKSHPEPIEDNDK--------HDTIKNAENNTEHSTVSDKSEAEQSQQPKPYFTTG--- 173

Query: 260 VAPRSKTTRRTKSKEEAR 207
            A +S+T++     +  +
Sbjct: 174 -ANQSETSKNEHDNDSVK 190


>sp|Q2FYF1|EBPS_STAA8 Elastin-binding protein ebpS OS=Staphylococcus
           aureus (strain NCTC 8325) GN=ebpS PE=1 SV=1
          Length = 486

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 440 MSNVHPNIMHDSTKALQKSRAFQDATKNAEPNTKHRVTTAKQHAELGREELNWVFAGTKE 261
           M   HP  + D+ K         D  KNAE NT+H   + K  AE  ++   +   G   
Sbjct: 125 MDKSHPEPIEDNDK--------HDTIKNAENNTEHSTVSDKSEAEQSQQPKPYFTTG--- 173

Query: 260 VAPRSKTTRRTKSKEEAR 207
            A +S+T++     +  +
Sbjct: 174 -ANQSETSKNEHDNDSVK 190


>sp|Q2FGW1|EBPS_STAA3 Elastin-binding protein ebpS OS=Staphylococcus
           aureus (strain USA300) GN=ebpS PE=3 SV=3
          Length = 486

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 440 MSNVHPNIMHDSTKALQKSRAFQDATKNAEPNTKHRVTTAKQHAELGREELNWVFAGTKE 261
           M   HP  + D+ K         D  KNAE NT+H   + K  AE  ++   +   G   
Sbjct: 125 MDKSHPEPIEDNDK--------HDTIKNAENNTEHSTVSDKSEAEQSQQPKPYFTTG--- 173

Query: 260 VAPRSKTTRRTKSKEEAR 207
            A +S+T++     +  +
Sbjct: 174 -ANQSETSKNEHDNDSVK 190
tr_hit_id A1CB97
Definition tr|A1CB97|A1CB97_ASPCL Putative uncharacterized protein OS=Aspergillus clavatus
Align length 118
Score (bit) 40.8
E-value 0.065
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960642|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_P13, 5'
         (622 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1CB97|A1CB97_ASPCL Putative uncharacterized protein OS=Asper...    41   0.065
tr|Q22ZF9|Q22ZF9_TETTH Putative uncharacterized protein OS=Tetra...    35   4.7  
tr|B8QS98|B8QS98_9CHLA Putative uncharacterized protein (Fragmen...    34   7.9  
tr|Q00Z54|Q00Z54_OSTTA Eukaryotic-type DNA primase, large subuni...    34   7.9  
tr|Q4Z6R8|Q4Z6R8_PLABE Kinesin-like protein, putative (Fragment)...    34   7.9  
tr|Q3SDE2|Q3SDE2_PARTE EPI10 protein (Chromosome undetermined sc...    34   8.0  
tr|B6L323|B6L323_BRAFL Putative uncharacterized protein OS=Branc...    34   8.0  

>tr|A1CB97|A1CB97_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_014520 PE=4 SV=1
          Length = 503

 Score = 40.8 bits (94), Expect = 0.065
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = -3

Query: 485 NSGFCQNSMVR*KTTMSNVHPNIMHDSTKALQKSRAFQDATKNAEPNTKHRVTTAKQ--H 312
           +SG CQ   VR   T  ++HP++  D   +       + A ++ +P   H   +  +  H
Sbjct: 5   SSGSCQELPVR---TTQDIHPDLEPDMASS-------ESAGQDNKPTESHAEQSEAEDNH 54

Query: 311 AELGREELNWVFAGTKEVAPRSKTTRRTKSKEEARS*IAFNAFFTNTPVPPRKPHEKQ 138
           AE     ++W  A  K+   + K + R KSK        F  ++ + P+ P +   +Q
Sbjct: 55  AEPECVTIDWAEAKKKKKKKKKKRSNRPKSKRGKNKPTGFEEYYVDAPITPEEYANEQ 112


>tr|Q22ZF9|Q22ZF9_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01479590 PE=4
           SV=1
          Length = 402

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = -3

Query: 572 DKMPQLWNQIFRRRFNKDVNQSCCFKALSNSGFCQNSMVR*K 447
           DK+    N IFR + NK++NQ+CCF   SN+G   + +++ K
Sbjct: 258 DKLDPNLNYIFRCKVNKNLNQNCCFHT-SNNGLGLDKILKGK 298


>tr|B8QS98|B8QS98_9CHLA Putative uncharacterized protein (Fragment)
           OS=Chlamydophila pecorum PE=4 SV=1
          Length = 116

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
 Frame = -3

Query: 422 NIMHDSTKALQKSRAFQDATKNAEPNTKHRVTTAKQHAELGREELNWVFAGTKEVAPRSK 243
           ++   STK L      + +TK  EP+TK   T      EL  +E +     TKE++P+  
Sbjct: 10  SLKEPSTKELSPK---EPSTK--EPSTKEPSTKEPSTKELSPKEPSTKEPSTKELSPKEP 64

Query: 242 TTRRTKSKEEARS*IAFNAFFTNTP----VPPRKPHEKQCNVTETS 117
           +T+   +KE +   ++     T  P    + P++P  K+ +  E S
Sbjct: 65  STKEPSTKEPSTKELSPKEPSTKEPSTKELSPKEPSTKEPSTKEPS 110


>tr|Q00Z54|Q00Z54_OSTTA Eukaryotic-type DNA primase, large subunit
           (ISS) OS=Ostreococcus tauri GN=Ot11g01000 PE=4 SV=1
          Length = 511

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
 Frame = -3

Query: 428 HPNIMHDSTKALQKSRAFQDATKNAEPNTKHRVTTAKQHAELGREELNWVFAGTKEVAPR 249
           H N + D    L     F+ A K+A  N        ++ AE  R   NW   G +EV+P 
Sbjct: 167 HKNELRD---VLMADFEFRKALKDASVNNLKLGEFERKCAEEARNAKNWFVVGFEEVSPL 223

Query: 248 SKTTR------RTKSKEEARS*IAFNAFFTNTPVPPRKPHE--KQCNVTETS 117
            +T R      R   ++E    + F  F T   +  +K  E  KQ  V E +
Sbjct: 224 VRTRRAYLIGGRAWIRKETLDQLVFGRFRTRLSLGMKKAKELFKQFEVAEAN 275


>tr|Q4Z6R8|Q4Z6R8_PLABE Kinesin-like protein, putative (Fragment)
           OS=Plasmodium berghei GN=PB000287.00.0 PE=3 SV=1
          Length = 1008

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = -3

Query: 407 STKALQKSRAFQDATKNAEPNTKHRVTTAKQHAELGREELNWVFAGTKEVAPRSKTTRRT 228
           S K +QKS   ++  KN + + K+R+ T K+H  + R+  N+ F+ T + +         
Sbjct: 421 SNKNMQKSVCDKNDNKNVKHSNKNRINTIKKHNTISRK--NYTFSDTSDFSSLDDMNYNL 478

Query: 227 KSKEEA 210
            + E+A
Sbjct: 479 NNSEKA 484


>tr|Q3SDE2|Q3SDE2_PARTE EPI10 protein (Chromosome undetermined
           scaffold_2, whole genome shotgun sequence) OS=Paramecium
           tetraurelia GN=EPI10 PE=4 SV=1
          Length = 321

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 403 QKPCRKAEPSKMPPKMQNQIQSTALPPQN 317
           Q P +KA PS++PP  Q Q+    LP QN
Sbjct: 8   QLPAQKATPSQLPPTAQQQVPEAYLPQQN 36


>tr|B6L323|B6L323_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_65506 PE=4 SV=1
          Length = 128

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
 Frame = +1

Query: 259 TSLVPAKTQFNSSRPSS-ACCFAVVTRCFVFGSA-----FLVASWKALLFCKAFVESCII 420
           T+  PA T   S  PS  AC     TRC ++G+A      L+  W   L    F   C++
Sbjct: 20  TAAAPAPTA--SVLPSGGACTLTEPTRCGIYGAAPSLQPLLILIWLGFLLWALFGNGCLL 77

Query: 421 --FGCTLDMVVFYL 456
              G T+DM   Y+
Sbjct: 78  AAMGTTMDMEAMYI 91