DK960652 |
Clone id |
TST39A01NGRL0007_P23 |
Library |
TST39 |
Length |
675 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_P23. 5' end sequence. |
Accession |
DK960652 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3521Contig1 |
Sequence |
ACCTGCCATCAGCAAGCCCCTGTCCAAGCCTTCACCGCCACCAGCCATGGTAGCAGCTGA GCCTGTAAGCGTGAAGCCTCTCACTATGCGAGGCCGGAAACGTCACAAGTGCATGGTCTG TGGCAACATCGCTAGATCCAGGTGTCCATTCTTTTCTTGCAAAGGTTGCTGTGTCAAGGC AGGGAATGCATGTCAGATTCATGTCCTGAAGCCAAGCCTAGCTGGCGAGAGTGCGCAAGG CTCTTCTGCTCCCCTTCCTTCACAGGGACCGGTAACATCCACCATTGTTAGGCACCCTTA TGACAGCCTACGACTGAGGACCGCAAGGCCCTCGGGGCTTATTACTAGGAAGGAAGCTGG CATTATGAATAGCTGGAGATTCTGCAAACTAAGGGCTTACCTAGAAGGAATCACTACAAA TGAGGATGAGGCTTTTAATATGTATATGCAGAACAATCTCTTGCTAGAGGAGCTTTTCAA TGTCAGCTATTCCGACAACCTTGATGGGCCAGGTCCCTTGCTGATGGCTGGGTGCACTTC CTATGAAAGGCCAGATGGAGGGATTGATGCGGCAACAGTGTCGGCTACCTTACATGTAAG GCAAAGGGAAAAGAGACGAGATGCACATAAGCAAAGGCTCAAGCGCACCATTGATCGCGG CTTGCAGAAGCTGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6P1R4 |
Definition |
sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine synthase 1-like OS=Homo sapiens |
Align length |
57 |
Score (bit) |
35.0 |
E-value |
0.36 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PCG6 |
Definition |
tr|A7PCG6|A7PCG6_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
231 |
Score (bit) |
123.0 |
E-value |
1.0e-26 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960652|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_P23, 5' (675 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PCG6|A7PCG6_VITVI Chromosome chr2 scaffold_11, whole genome... 123 1e-26 tr|Q9LPJ1|Q9LPJ1_ARATH F6N18.11 (Putative uncharacterized protei... 117 9e-25 tr|B6T3T8|B6T3T8_MAIZE Putative uncharacterized protein OS=Zea m... 112 2e-23 tr|Q7EZS0|Q7EZS0_ORYSJ Os08g0129500 protein OS=Oryza sativa subs... 106 1e-21 tr|A9SJC1|A9SJC1_PHYPA Predicted protein OS=Physcomitrella paten... 104 6e-21 tr|B8BAF7|B8BAF7_ORYSI Putative uncharacterized protein OS=Oryza... 97 7e-19 tr|A3BPB4|A3BPB4_ORYSJ Putative uncharacterized protein OS=Oryza... 63 2e-08 tr|A3BPB3|A3BPB3_ORYSJ Putative uncharacterized protein OS=Oryza... 51 6e-05 tr|Q9FXH7|Q9FXH7_ARATH F6F9.16 protein (Putative uncharacterized... 41 0.060 tr|Q5Q0G3|Q5Q0G3_ARATH Putative uncharacterized protein OS=Arabi... 41 0.060 tr|Q5Q0G2|Q5Q0G2_ARATH Putative uncharacterized protein OS=Arabi... 41 0.060 tr|Q9M2U4|Q9M2U4_ARATH Putative uncharacterized protein T12E18_1... 41 0.079 tr|Q652K4|Q652K4_ORYSJ Os09g0531600 protein OS=Oryza sativa subs... 41 0.079 tr|B4FPQ4|B4FPQ4_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.079 tr|A3C0W6|A3C0W6_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.079 tr|A2Z3E0|A2Z3E0_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.079 tr|A3BVH0|A3BVH0_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.10 tr|Q9LQZ5|Q9LQZ5_ARATH F10A5.26 (Putative uncharacterized protei... 40 0.13 tr|Q70I38|Q70I38_LOTJA CM0216.460.nc protein OS=Lotus japonicus ... 40 0.18 tr|Q6YT10|Q6YT10_ORYSJ Putative lateral root primordia (LRP1) OS... 39 0.30 tr|A2YXT0|A2YXT0_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.30 tr|Q5Z5Y2|Q5Z5Y2_ORYSJ Os06g0712600 protein OS=Oryza sativa subs... 38 0.67 tr|B6T347|B6T347_MAIZE LRP1 OS=Zea mays PE=2 SV=1 38 0.67 tr|A2Q4P0|A2Q4P0_MEDTR Zinc finger, LRP1-type OS=Medicago trunca... 37 0.87 tr|A1DR76|A1DR76_CATRO DNA-binding protein OS=Catharanthus roseu... 37 0.87 tr|A9EPH6|A9EPH6_SORC5 Putative uncharacterized protein OS=Soran... 37 1.1 tr|Q9SJT8|Q9SJT8_ARATH Putative uncharacterized protein At2g2140... 37 1.1 tr|A7P7V9|A7P7V9_VITVI Chromosome chr3 scaffold_8, whole genome ... 37 1.1 tr|Q9SD40|Q9SD40_ARATH Putative uncharacterized protein F24M12.1... 35 3.3 tr|Q10954|Q10954_CAEEL Putative uncharacterized protein OS=Caeno... 35 3.3
>tr|A7PCG6|A7PCG6_VITVI Chromosome chr2 scaffold_11, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015854001 PE=4 SV=1 Length = 384
Score = 123 bits (308), Expect = 1e-26 Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 21/231 (9%) Frame = +2
Query: 44 AMVAAEPVSV--KPLTMRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHVLK-- 211 A AA P S+ +P +RG + KC+ CGN+ARSRCP+ SCK CC KA N C IHVLK Sbjct: 36 AAAAATPSSITSQPKNLRGLNKPKCIQCGNVARSRCPYQSCKSCCAKAQNPCHIHVLKAN 95
Query: 212 -------PSLAGE---------SAQGSSAPLPSQGPVTSTIVRHPYDSLRLRTARPSGLI 343 PS + S G+S + S +++ + + LR+ +P + Sbjct: 96 ATFPDRTPSSSSPLFDQQSTEVSPSGTSLRVASLRQLSNNFAQFNNVQMPLRSRKP---L 152
Query: 344 TRKEAGIMNSWRFCKLRAYLEGITTNEDEAFNMYMQNNLLLEELFNVSYSDNLDGPGPLL 523 TRK+A +N WRF KL+ Y E+EAF+ YMQN LLEE+F+V + + + Sbjct: 153 TRKDAATINEWRFSKLKEYKNRNIEVENEAFDRYMQNISLLEEVFSVKSTPDGTTDHGIS 212
Query: 524 MAGCTSYERPDGGIDAATVS-ATLHVRQREKRRDAHKQRLKRTIDRGLQKL 673 ++ S D + VS L ++ R D ++R+ +DRGL+KL Sbjct: 213 VSDAASPNLEDN--SSVMVSWLKLRLKSNPTRSDNSRKRILEIVDRGLKKL 261
>tr|Q9LPJ1|Q9LPJ1_ARATH F6N18.11 (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=At1g32730 PE=2 SV=1 Length = 327
Score = 117 bits (292), Expect = 9e-25 Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 15/218 (6%) Frame = +2
Query: 65 VSVKPLTMRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHVLK-PSLAGESAQG 241 V P T+RG + KC+ CGN+ARSRCPF SCKGCC +A N C IHVLK S +GE Q Sbjct: 16 VVTPPKTLRGLNKPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKVASTSGEKTQA 75
Query: 242 SSAPLPSQ----GPVTSTIVRHPYDSLRLRTARPSGL---------ITRKEAGIMNSWRF 382 S P Q G ST L A+ + L +T K+A +N WRF Sbjct: 76 PSTPSSEQKATEGTPGSTTRVSSIRQLSSNFAQFNNLNASSRQRKPLTIKDAQALNEWRF 135
Query: 383 CKLRAYLEGITTNEDEAFNMYMQNNLLLEELFNVSYSDNLDGPGPLLMAGCTSYERPDGG 562 KL+ Y + E+EAF+ YM N LLEE F+ + + + G P+ Sbjct: 136 TKLKEYRDRNIEVENEAFDRYMSNVNLLEEAFSFTSVPDEESHGT---------AAPEQN 186
Query: 563 IDAATVS-ATLHVRQREKRRDAHKQRLKRTIDRGLQKL 673 + VS L +R R ++ K+R+ T+ GL KL Sbjct: 187 KEENIVSELKLRLRSNSARTESFKKRIAETVKAGLVKL 224
>tr|B6T3T8|B6T3T8_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 381
Score = 112 bits (280), Expect = 2e-23 Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 9/205 (4%) Frame = +2
Query: 86 MRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHVLKPS---------LAGESAQ 238 +RG + KC+ CGN+ARSRCPF CK CC KA N C IHVLK S S + Sbjct: 56 LRGLNKPKCIQCGNVARSRCPFQCCKSCCYKAQNPCHIHVLKQSNTLPDKPSPATAPSTE 115
Query: 239 GSSAPLPSQGPVTSTIVRHPYDSLRLRTARPSGLITRKEAGIMNSWRFCKLRAYLEGITT 418 S LP+ + L++ + +T+K+A +N WRF KLR +++G Sbjct: 116 QPSTNLPATSSASRLAALQKLPQHFLKSLQTKKSLTKKDAVAINKWRFMKLREHMQGDID 175
Query: 419 NEDEAFNMYMQNNLLLEELFNVSYSDNLDGPGPLLMAGCTSYERPDGGIDAATVSATLHV 598 +E+EA+ Y QN LLEE F +++ P A + ER +D A + + Sbjct: 176 DENEAYERYTQNVRLLEETFYPMEDADVE---PEAEAPSSDEER----MDLLVSEAKVRL 228
Query: 599 RQREKRRDAHKQRLKRTIDRGLQKL 673 + + D K+R+ +D+ L+KL Sbjct: 229 KSDNEIADRFKERVAAILDQKLKKL 253
>tr|Q7EZS0|Q7EZS0_ORYSJ Os08g0129500 protein OS=Oryza sativa subsp. japonica GN=P0582D05.115 PE=2 SV=1 Length = 358
Score = 106 bits (265), Expect = 1e-21 Identities = 70/207 (33%), Positives = 107/207 (51%), Gaps = 11/207 (5%) Frame = +2
Query: 86 MRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHVLK---------PSLAGESAQ 238 +RG + KC+ CGN+ARSRCPF CK CC KA N C IHVLK P ++ Sbjct: 47 LRGLNKPKCIQCGNVARSRCPFQCCKSCCYKAQNPCHIHVLKQNNTLPDKPPLSTAPLSE 106
Query: 239 GSSAPLPSQGPV-TSTIVRHPYDSLR-LRTARPSGLITRKEAGIMNSWRFCKLRAYLEGI 412 SA +PS G +++ R P+ L LRT + + +K+ +N WRF KL+ +++G Sbjct: 107 QPSANIPSTGSSRLASLQRLPHHFLNSLRTKKS---LAKKDVMGINKWRFEKLKEHIQGD 163
Query: 413 TTNEDEAFNMYMQNNLLLEELFNVSYSDNLDGPGPLLMAGCTSYERPDGGIDAATVSATL 592 E+EA+ Y QN LLEE F ++ D D P P +S ER ++ A + Sbjct: 164 IDAENEAYERYTQNVGLLEETFGLT-EDAADEPEP---EATSSEER----METLVSEAKV 215
Query: 593 HVRQREKRRDAHKQRLKRTIDRGLQKL 673 ++ D + R+ +D+ +++L Sbjct: 216 RLKSDSANADGFRDRIATILDQKIKEL 242
>tr|A9SJC1|A9SJC1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165246 PE=4 SV=1 Length = 537
Score = 104 bits (259), Expect = 6e-21 Identities = 78/256 (30%), Positives = 111/256 (43%), Gaps = 60/256 (23%) Frame = +2
Query: 86 MRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHVLKPSLA---------GESAQ 238 ++G K+ KC VCGN AR+RCPF +CK CC K N C++H KP A G Sbjct: 49 LKGVKKRKCAVCGNTARARCPFRACKTCCNKMKNVCEVHANKPKQALTPPALDPHGPQWT 108
Query: 239 GSSAPLP------------------SQGPVTSTIVRH-------------------PY-- 301 G+ +P +Q + + V H PY Sbjct: 109 GNVNAMPYGSPYVKPPYMSPAAYNAAQAGIAAFRVGHSPPQSRLLAPGQYTAQNARPYMA 168
Query: 302 --------DSLRLRTARPSGLITRKEAGIMNSWRFCKLRAYLEGITTNEDEAFNMYMQNN 457 + RL+ + + L +EA I N+WR K+R +L+G +EDEAF+ YM N Sbjct: 169 SQSTLEQQELQRLKNLKTAILAANREAQITNTWRTQKMREFLDGELLSEDEAFDRYMFNM 228
Query: 458 LLLEELF--NVSYSDNLDGPGPLLMAGCTSYERPDGGIDAATVSATLHVRQ--REKRRDA 625 LLEE+F + L G LL+ GC + D V L +++ R++ Sbjct: 229 ALLEEVFLPKTTAPTGLSPHGELLVGGCEALNDEKDVSDTLMVVDGLRLQRGMNATRKEE 288
Query: 626 HKQRLKRTIDRGLQKL 673 + RLK IDR LQ L Sbjct: 289 SRSRLKVIIDRSLQAL 304
>tr|B8BAF7|B8BAF7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27692 PE=4 SV=1 Length = 373
Score = 97.4 bits (241), Expect = 7e-19 Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 27/223 (12%) Frame = +2
Query: 86 MRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIH---------------VLK--- 211 +RG + KC+ CGN+ARSRCPF CK CC KA N C IH +LK Sbjct: 47 LRGLNKPKCIQCGNVARSRCPFQCCKSCCYKAQNPCHIHGFREGNEGKGVEKNFILKQNN 106
Query: 212 -------PSLAGESAQGSSAPLPSQGPV-TSTIVRHPYDSLR-LRTARPSGLITRKEAGI 364 PS A S Q SA +PS G +++ R P+ L LRT + + +K+ Sbjct: 107 TLPDKPHPSTAPLSEQ-PSANIPSTGSSRLASLQRLPHHFLNSLRTKKS---LAKKDVVG 162
Query: 365 MNSWRFCKLRAYLEGITTNEDEAFNMYMQNNLLLEELFNVSYSDNLDGPGPLLMAGCTSY 544 +N WRF KL+ +++G E+EA+ Y QN LLEE F ++ D D P P +S Sbjct: 163 INKWRFEKLKEHIQGDIDAENEAYERYTQNVGLLEETFGLT-EDAADEPEP---EATSSE 218
Query: 545 ERPDGGIDAATVSATLHVRQREKRRDAHKQRLKRTIDRGLQKL 673 ER ++ A + ++ D + R+ +D+ +++L Sbjct: 219 ER----METLVSEAKVRLKSDSANADGFRDRIATILDQKIKEL 257
>tr|A3BPB4|A3BPB4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_024886 PE=4 SV=1 Length = 118
Score = 62.8 bits (151), Expect = 2e-08 Identities = 25/51 (49%), Positives = 32/51 (62%) Frame = +2
Query: 86 MRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHVLKPSLAGESAQ 238 +RG + KC+ CGN+ARSRCPF CK CC KA N C IH + G+ + Sbjct: 47 LRGLNKPKCIQCGNVARSRCPFQCCKSCCYKAQNPCHIHGFREGNEGKGVE 97
>tr|A3BPB3|A3BPB3_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_024885 PE=4 SV=1 Length = 256
Score = 51.2 bits (121), Expect = 6e-05 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 1/143 (0%) Frame = +2
Query: 248 APLPSQGPVTSTIVRHPYDSLR-LRTARPSGLITRKEAGIMNSWRFCKLRAYLEGITTNE 424 AP+ +++ R P+ L LRT + + +K+ +N WRF KL+ +++G E Sbjct: 9 APIKISSSRLASLQRLPHHFLNSLRTKKS---LAKKDVMGINKWRFEKLKEHIQGDIDAE 65
Query: 425 DEAFNMYMQNNLLLEELFNVSYSDNLDGPGPLLMAGCTSYERPDGGIDAATVSATLHVRQ 604 +EA+ Y QN LLEE F ++ D D P P +S ER ++ A + ++ Sbjct: 66 NEAYERYTQNVGLLEETFGLT-EDAADEPEP---EATSSEER----METLVSEAKVRLKS 117
Query: 605 REKRRDAHKQRLKRTIDRGLQKL 673 D + R+ +D+ +++L Sbjct: 118 DSANADGFRDRIATILDQKIKEL 140
>tr|Q9FXH7|Q9FXH7_ARATH F6F9.16 protein (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=At1g19790 PE=2 SV=1 Length = 345
Score = 41.2 bits (95), Expect = 0.060 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2
Query: 59 EPV--SVKPLTMRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHV 205 EPV S T+ + C CGN A+ CP C+ CC G CQ HV Sbjct: 100 EPVRSSTGGFTVTRQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHV 150
>tr|Q5Q0G3|Q5Q0G3_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana GN=AT1G19790 PE=2 SV=1 Length = 234
Score = 41.2 bits (95), Expect = 0.060 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2
Query: 59 EPV--SVKPLTMRGRKRHKCMVCGNIARSRCPFFSCKGCCVKAGNACQIHV 205 EPV S T+ + C CGN A+ CP C+ CC G CQ HV Sbjct: 100 EPVRSSTGGFTVTRQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHV 150
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