DK960654 |
Clone id |
TST39A01NGRL0008_A01 |
Library |
TST39 |
Length |
701 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A01. 5' end sequence. |
Accession |
DK960654 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CTCCGTCCCGCCCCCCTCCCTGTCTCTCTCTCTCTCACAGGTCGTTGTCTGCGCACACAT CACCACTCAACTACAATTCGCCTCCGCCATCGACCATCAAGAACCTTCTCTTCACTGCTG ATCTTTGTATGCGTCTAGTGCATGTGGTTCTGTTATGGCCATTTAAGCTCATGTTTGCTA CCTTCATTCTTGAAGAAGTAGCAGCACCGTCTTCCCTTTCATTTCAAAAGTCAACTTTTA GCTCCAAGATGAACATGCATTCAACTGCATCGGCTTCTGCATCGACGCCTAATTTACGCA AGTAGCCACGAGACCATCATCTCTATAGATAGAACGAGCGTGTCATTGCTACGAAGCGCG TCCCTAATTCGCTCAACCTATACAACAGCAAGGAGAATGCCACTAACATTACCATCACCA ATAACGTCCACGGCGGCGGTGGCAGCATCCGCTCCTATATCGTTACCCTCAAGAAGTCCT CTCACAGGATCAGGAACTGGGGCATCGGCCTTTTCCAGGAGGCTGAGTTTACTAAGCTCC GTATGTTGGGTCTCAATTGAGCTCTTTGTAACTTTGAGTCAAATTCTTGCAGCGATTGTG GTGCTTGCATTATCTCAAAATGAGCATCCTCAGACCCCTTTACCAGTATGGGTCATAGGT TATGCTGTGGGATGCGGGCGCATCACTGCCTCTCTTATATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q93Z92 |
Definition |
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana |
Align length |
42 |
Score (bit) |
40.0 |
E-value |
0.012 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84PB2 |
Definition |
tr|Q84PB2|Q84PB2_ORYSJ Putative ATP synthetase alpha chain OS=Oryza sativa subsp. japonica |
Align length |
132 |
Score (bit) |
74.3 |
E-value |
7.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960654|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_A01, 5' (701 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q84PB2|Q84PB2_ORYSJ Putative ATP synthetase alpha chain OS=Or... 74 7e-12 tr|A3AC39|A3AC39_ORYSJ Putative uncharacterized protein OS=Oryza... 74 7e-12 tr|A2XAD9|A2XAD9_ORYSI Putative uncharacterized protein OS=Oryza... 74 7e-12 tr|Q8VY23|Q8VY23_ARATH Putative uncharacterized protein At4g3260... 74 1e-11 tr|O65539|O65539_ARATH Putative uncharacterized protein F4D11.20... 74 1e-11 tr|A9SFT9|A9SFT9_PHYPA Predicted protein (Fragment) OS=Physcomit... 72 4e-11 tr|A9SFT2|A9SFT2_PHYPA Predicted protein (Fragment) OS=Physcomit... 72 4e-11 tr|Q0DKA7|Q0DKA7_ORYSJ Os05g0179000 protein OS=Oryza sativa subs... 69 3e-10 tr|B8AYN4|B8AYN4_ORYSI Putative uncharacterized protein OS=Oryza... 69 3e-10 tr|A3B0J1|A3B0J1_ORYSJ Putative uncharacterized protein OS=Oryza... 69 3e-10 tr|Q5VRD4|Q5VRD4_ORYSJ cDNA clone:J033120I17, full insert sequen... 67 8e-10 tr|B8ADJ9|B8ADJ9_ORYSI Putative uncharacterized protein OS=Oryza... 67 8e-10 tr|A2ZPX2|A2ZPX2_ORYSJ Putative uncharacterized protein OS=Oryza... 67 8e-10 tr|Q0DWY2|Q0DWY2_ORYSJ Os02g0787500 protein (Fragment) OS=Oryza ... 67 1e-09 tr|Q9XFH7|Q9XFH7_9ASTE Putative uncharacterized protein (Fragmen... 66 2e-09 tr|B6TV66|B6TV66_MAIZE Protein binding protein OS=Zea mays PE=2 ... 66 2e-09 tr|A7P5G9|A7P5G9_VITVI Chromosome chr4 scaffold_6, whole genome ... 65 5e-09 tr|A7P7H0|A7P7H0_VITVI Chromosome chr9 scaffold_7, whole genome ... 64 7e-09 tr|Q9C965|Q9C965_ARATH Putative RING zinc finger protein; 53384-... 64 9e-09 tr|A5BDK1|A5BDK1_VITVI Putative uncharacterized protein OS=Vitis... 63 2e-08 tr|A7PEV6|A7PEV6_VITVI Chromosome chr11 scaffold_13, whole genom... 62 5e-08 tr|Q6K2E0|Q6K2E0_ORYSJ Os09g0323100 protein OS=Oryza sativa subs... 58 7e-07 tr|B8BEF9|B8BEF9_ORYSI Putative uncharacterized protein OS=Oryza... 58 7e-07 tr|B8A0K5|B8A0K5_MAIZE Putative uncharacterized protein OS=Zea m... 57 9e-07 tr|Q3EDB8|Q3EDB8_ARATH Uncharacterized protein At1g15590.1 (Puta... 54 1e-05 tr|Q6EPF2|Q6EPF2_ORYSJ Ring zinc finger protein-like OS=Oryza sa... 47 0.002 tr|Q0DYQ7|Q0DYQ7_ORYSJ Os02g0674700 protein OS=Oryza sativa subs... 47 0.002 tr|A3BXF6|A3BXF6_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.002 tr|Q9SUA5|Q9SUA5_ARATH Putative uncharacterized protein AT4g2658... 46 0.003 tr|Q9M9D6|Q9M9D6_ARATH T16N11.10 protein (Putative uncharacteriz... 46 0.003
>tr|Q84PB2|Q84PB2_ORYSJ Putative ATP synthetase alpha chain OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 198
Score = 74.3 bits (181), Expect = 7e-12 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 7/132 (5%) Frame = +1
Query: 301 SSHETIISIDRTS-VSLLRSASLIRSTYTTARRMPLTLPSPITSTA------AVAASAPI 459 S HE II I R S S S S+ R + P+P+ +A A+ A + + Sbjct: 8 SGHEHIIDIPRDSGPSTSTSHSVARENHGE--------PNPVDRSATRALVPALQAPSAV 59
Query: 460 SLPSRSPLTGSGTGASAFXXXXXXXXXVCWVSIELFVTLSQILAAIVVLALSQNEHPQTP 639 PS +G+ + W+SIE+ V +SQI+AAIVVL+LS+ EHPQ P Sbjct: 60 GAPSAGHTSGARRSDNYVRRHRSPLNSGLWISIEVLVNVSQIVAAIVVLSLSRKEHPQAP 119
Query: 640 LPVWVIGYAVGC 675 L WVIGY VGC Sbjct: 120 LFEWVIGYTVGC 131
>tr|A3AC39|A3AC39_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_008361 PE=4 SV=1 Length = 398
Score = 74.3 bits (181), Expect = 7e-12 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 7/132 (5%) Frame = +1
Query: 301 SSHETIISIDRTS-VSLLRSASLIRSTYTTARRMPLTLPSPITSTA------AVAASAPI 459 S HE II I R S S S S+ R + P+P+ +A A+ A + + Sbjct: 8 SGHEHIIDIPRDSGPSTSTSHSVARENHGE--------PNPVDRSATRALVPALQAPSAV 59
Query: 460 SLPSRSPLTGSGTGASAFXXXXXXXXXVCWVSIELFVTLSQILAAIVVLALSQNEHPQTP 639 PS +G+ + W+SIE+ V +SQI+AAIVVL+LS+ EHPQ P Sbjct: 60 GAPSAGHTSGARRSDNYVRRHRSPLNSGLWISIEVLVNVSQIVAAIVVLSLSRKEHPQAP 119
Query: 640 LPVWVIGYAVGC 675 L WVIGY VGC Sbjct: 120 LFEWVIGYTVGC 131
>tr|A2XAD9|A2XAD9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_09219 PE=4 SV=1 Length = 398
Score = 74.3 bits (181), Expect = 7e-12 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 7/132 (5%) Frame = +1
Query: 301 SSHETIISIDRTS-VSLLRSASLIRSTYTTARRMPLTLPSPITSTA------AVAASAPI 459 S HE II I R S S S S+ R + P+P+ +A A+ A + + Sbjct: 8 SGHEHIIDIPRDSGPSTSTSHSVARENHGE--------PNPVDRSATRALVPALQAPSAV 59
Query: 460 SLPSRSPLTGSGTGASAFXXXXXXXXXVCWVSIELFVTLSQILAAIVVLALSQNEHPQTP 639 PS +G+ + W+SIE+ V +SQI+AAIVVL+LS+ EHPQ P Sbjct: 60 GAPSAGHTSGARRSDNYVRRHRSPLNSGLWISIEVLVNVSQIVAAIVVLSLSRKEHPQAP 119
Query: 640 LPVWVIGYAVGC 675 L WVIGY VGC Sbjct: 120 LFEWVIGYTVGC 131
>tr|Q8VY23|Q8VY23_ARATH Putative uncharacterized protein At4g32600 OS=Arabidopsis thaliana GN=At4g32600 PE=2 SV=1 Length = 453
Score = 73.6 bits (179), Expect = 1e-11 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Frame = +1
Query: 400 PLTLPSPITSTAAVAASA---PISLPSRSPLTGSGTGASAFXXXXXXXXXVCWVSIELFV 570 P+ P P T+TA+ ++S P S+ R SG W+SIELF+ Sbjct: 76 PMAAPQPATATASSSSSMRSNPRSVRRRRSPLNSGL----------------WISIELFL 119
Query: 571 TLSQILAAIVVLALSQNEHPQTPLPVWVIGYAVGC 675 T+ QI+AAIVVL+LS++EHP+ PL W++GYA GC Sbjct: 120 TVGQIIAAIVVLSLSKHEHPRAPLFTWIVGYACGC 154
>tr|O65539|O65539_ARATH Putative uncharacterized protein F4D11.200 (Putative uncharacterized protein AT4g32600) OS=Arabidopsis thaliana GN=F4D11.200 PE=4 SV=1 Length = 495
Score = 73.6 bits (179), Expect = 1e-11 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Frame = +1
Query: 400 PLTLPSPITSTAAVAASA---PISLPSRSPLTGSGTGASAFXXXXXXXXXVCWVSIELFV 570 P+ P P T+TA+ ++S P S+ R SG W+SIELF+ Sbjct: 76 PMAAPQPATATASSSSSMRSNPRSVRRRRSPLNSGL----------------WISIELFL 119
Query: 571 TLSQILAAIVVLALSQNEHPQTPLPVWVIGYAVGC 675 T+ QI+AAIVVL+LS++EHP+ PL W++GYA GC Sbjct: 120 TVGQIIAAIVVLSLSKHEHPRAPLFTWIVGYACGC 154
>tr|A9SFT9|A9SFT9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_44459 PE=4 SV=1 Length = 304
Score = 71.6 bits (174), Expect = 4e-11 Identities = 31/43 (72%), Positives = 37/43 (86%) Frame = +1
Query: 547 WVSIELFVTLSQILAAIVVLALSQNEHPQTPLPVWVIGYAVGC 675 WVSIEL +T+SQI+A+I+VL LS+NEHPQ PL VWV GYA GC Sbjct: 12 WVSIELTITISQIIASIIVLVLSRNEHPQAPLHVWVAGYAAGC 54
>tr|A9SFT2|A9SFT2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_44467 PE=4 SV=1 Length = 300
Score = 71.6 bits (174), Expect = 4e-11 Identities = 31/43 (72%), Positives = 37/43 (86%) Frame = +1
Query: 547 WVSIELFVTLSQILAAIVVLALSQNEHPQTPLPVWVIGYAVGC 675 WVSIEL +T+SQI+A+I+VL LS+NEHPQ PL VWV GYA GC Sbjct: 12 WVSIELTITISQIIASIIVLVLSRNEHPQAPLHVWVAGYAAGC 54
>tr|Q0DKA7|Q0DKA7_ORYSJ Os05g0179000 protein OS=Oryza sativa subsp. japonica GN=Os05g0179000 PE=2 SV=1 Length = 407
Score = 68.9 bits (167), Expect = 3e-10 Identities = 29/44 (65%), Positives = 37/44 (84%) Frame = +1
Query: 544 CWVSIELFVTLSQILAAIVVLALSQNEHPQTPLPVWVIGYAVGC 675 CW+S+EL V +SQI+AAI VL++S+NEHP +PL WVIGY VGC Sbjct: 97 CWISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGC 140
>tr|B8AYN4|B8AYN4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18674 PE=4 SV=1 Length = 407
Score = 68.9 bits (167), Expect = 3e-10 Identities = 29/44 (65%), Positives = 37/44 (84%) Frame = +1
Query: 544 CWVSIELFVTLSQILAAIVVLALSQNEHPQTPLPVWVIGYAVGC 675 CW+S+EL V +SQI+AAI VL++S+NEHP +PL WVIGY VGC Sbjct: 97 CWISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGC 140
>tr|A3B0J1|A3B0J1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_016563 PE=4 SV=1 Length = 383
Score = 68.9 bits (167), Expect = 3e-10 Identities = 29/44 (65%), Positives = 37/44 (84%) Frame = +1
Query: 544 CWVSIELFVTLSQILAAIVVLALSQNEHPQTPLPVWVIGYAVGC 675 CW+S+EL V +SQI+AAI VL++S+NEHP +PL WVIGY VGC Sbjct: 73 CWISVELVVNVSQIIAAICVLSVSRNEHPHSPLFEWVIGYTVGC 116
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