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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960655
Clone id TST39A01NGRL0008_A02
Library
Length 686
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CTCCAATCAGCTATGGCTCTGCTCTTCTTGCTTTCTGCGTGAGCGAGGTTTTCCTTTTCC
ATGATTTCCACAGGTGTACCCATTTGTGGAAATCATGGAAAAAGCAAGCTCTGCTCATGC
AGAAAGCCGAAAGATCGGCGCCAAATCTTCTCCAATCGTCTATGGCGCTGCTTTTTTTGC
TCTCTGCATGCGCAGAGCTTGCATTTTTCATGAATACCATGTCCCCAATCGGCTATGCTG
CTGGTGTTCTGCTCTTTGCATGATAGCTTCCTTTCGTTGTGATTTTCCAAATTTTGGGAC
TTCTCCAATCGGATATGGTGCTGCTCTTTTTGCTTTCTGCGTGAGCAGCGATGATTTCCA
CATTTTGGGTCTTCCACTAATCGGCTGTGCAGCTGGTATTCTTGCCTTCTTCATGAGCAG
AGCTTGCTTTCTTGGTGACGGCATTTAGGTTTTGTCTTAAGCTCCTCTGGTTTATGCTTG
TGCTTATGCTTACTTACTTGTCTCTGATTTGCAATGTCTGAAAACAGGAAAATCTCTCTG
CTTTCTCTGTTTTCCAACGTTCTATCACATGGGGGCAGAGACTGAAGGTGTGATGCGGGC
ACGGAAACGGGGTTGCACATCCNACATTATTCACAGATTCCTACGATGGCTCAACTACAC
AGTCATCCTTGCAAGCATCATCACCA
■■Homology search results ■■ -
sp_hit_id Q9JKS6
Definition sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus
Align length 49
Score (bit) 33.5
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960655|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A02, 5'
         (686 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo ...    33   1.1  
sp|O95819|M4K4_HUMAN Mitogen-activated protein kinase kinase kin...    32   4.1  
sp|P16402|H13_HUMAN Histone H1.3 OS=Homo sapiens GN=HIST1H1D PE=...    32   4.1  
sp|Q9CVI2|F133B_MOUSE Protein FAM133B OS=Mus musculus GN=Fam133b...    32   4.1  
sp|Q54C02|UBA5_DICDI Ubiquitin-like modifier-activating enzyme 5...    31   5.4  
sp|P85857|GDF6A_DANRE Growth/differentiation factor 6-A OS=Danio...    31   7.1  
sp|Q5KUH7|Y3374_GEOKA UPF0059 membrane protein GK3374 OS=Geobaci...    30   9.2  
sp|Q9NPI7|KRCC1_HUMAN Lysine-rich coiled-coil protein 1 OS=Homo ...    30   9.2  
sp|P55103|INHBC_HUMAN Inhibin beta C chain OS=Homo sapiens GN=IN...    30   9.2  

>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1
            SV=1
          Length = 5085

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -3

Query: 441  PSPRKQALLMKKARIPAAQPISGRPKMWKSSLLTQKAKRAAPYPIGEVP 295
            P+P K   + K+A+  AA+ +  +P+   ++  T+K K+  P  +G+ P
Sbjct: 939  PAPAKATAVKKEAKAAAAENLESKPEQAPTAKKTEKDKKPPPAKVGKPP 987


>sp|O95819|M4K4_HUMAN Mitogen-activated protein kinase kinase kinase
           kinase 4 OS=Homo sapiens GN=MAP4K4 PE=1 SV=2
          Length = 1239

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
 Frame = -1

Query: 410 RRQEYQLHSRLVEDPKCGNHRCSRRKQKEQHHIRLEKSQNLENHNE---RKLSCKEQNTS 240
           R+QE +   R  E+ +       RRK++E+     E+ + +E   E   R+L  ++++  
Sbjct: 421 RQQEREQRRREQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLE 480

Query: 239 SIADWGHGIHEKCKLCACREQKKQRHRRLEKIWRR 135
            +      + E+  L  CR ++ + HR+ E++ R+
Sbjct: 481 VLQQ--QLLQEQAMLLECRWREMEEHRQAERLQRQ 513


>sp|P16402|H13_HUMAN Histone H1.3 OS=Homo sapiens GN=HIST1H1D PE=1
           SV=2
          Length = 221

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 441 PSPRKQALLMKKARIP---AAQPISGRPKMWKSSLLTQKAKRAAP 316
           P P+K A    KA+ P   AA+P SG+PK+        KAK+AAP
Sbjct: 181 PQPKKAAKSPAKAKAPKPKAAKPKSGKPKV-------TKAKKAAP 218


>sp|Q9CVI2|F133B_MOUSE Protein FAM133B OS=Mus musculus GN=Fam133b
           PE=2 SV=2
          Length = 245

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -1

Query: 440 RHQESKLCS*RRQEYQ---LHSRLVEDPKCGNHRCSRRKQKEQHHIRLEKSQNLENHNER 270
           R +++K  S +R+ Y+   L S  + +  CG  +  R+K  E+     +K++    H + 
Sbjct: 170 REKDTKGLSKKRKMYEDKPLSSESLSESDCGEVQAKRKKSGEERERTTDKAKKRRKHKKH 229

Query: 269 KLSCKEQNTSSIAD 228
               K++  SS +D
Sbjct: 230 SKKKKKKAASSSSD 243


>sp|Q54C02|UBA5_DICDI Ubiquitin-like modifier-activating enzyme 5
           OS=Dictyostelium discoideum GN=uba5 PE=3 SV=1
          Length = 381

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 401 EYQLHSRLVEDPKCGNHRCSRRKQKEQHHIRLEKSQNL-ENHNERKLSCKEQNTSSIADW 225
           +Y     +  +P+C N  C   +QK +  ++    +NL +N+N   ++  E+ ++   +W
Sbjct: 259 DYFPKDNMKPNPECSNSFCIIHQQKYKEFLKNNPKENLIQNNNNNNINNNEKKSTYENEW 318

Query: 224 G 222
           G
Sbjct: 319 G 319


>sp|P85857|GDF6A_DANRE Growth/differentiation factor 6-A OS=Danio
           rerio GN=gdf6a PE=2 SV=1
          Length = 404

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -1

Query: 440 RHQESKLCS*RRQEYQLHSRLVEDPKCGNHRCSRRKQKEQ---HHIRLEKSQNLENHNER 270
           RHQE++LC   +  Y      ++  + G HR SR +Q+      + R +K +NL N  + 
Sbjct: 201 RHQENQLCLQLKVTYGKSDTEIDLKQLGFHRHSRTQQERAILVVYTRSKKRENLFNEMKE 260

Query: 269 KLSCK 255
           K+  +
Sbjct: 261 KIKSR 265


>sp|Q5KUH7|Y3374_GEOKA UPF0059 membrane protein GK3374
           OS=Geobacillus kaustophilus GN=GK3374 PE=3 SV=1
          Length = 183

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 233 LCCWCSALCMIASFRCD--FPNFGTSPIGYGAALFAFCVSSDDFHI-LGLPLIG 385
           L  W     +IASFR D   P F   P G G   FAF VS D F + L L + G
Sbjct: 79  LLLWLGGQMIIASFRRDDGSPLF---PRGVGLLFFAFSVSLDSFSVGLSLGIFG 129


>sp|Q9NPI7|KRCC1_HUMAN Lysine-rich coiled-coil protein 1 OS=Homo
           sapiens GN=KRCC1 PE=2 SV=1
          Length = 259

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -1

Query: 437 HQESKLCS*RRQEYQLHSRLVEDPKCGNHRCSRRK--QKEQHHIR--LEKSQNLENHNER 270
           +Q+  +C     E++++     D     H+ S ++  QK + H     EKS+   + ++R
Sbjct: 121 NQQEYICGSHGVEHRVYKHFSSDNSTSTHQASHKQIHQKRKRHPEEGREKSEEERSKHKR 180

Query: 269 KLSCKE 252
           K SC+E
Sbjct: 181 KKSCEE 186


>sp|P55103|INHBC_HUMAN Inhibin beta C chain OS=Homo sapiens GN=INHBC
           PE=1 SV=1
          Length = 352

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
 Frame = +2

Query: 140 AKSSPIVYGAAF--FALCMRRACIFHEYHVPNRLCCWCSALCMIASFRCDFPNFG----- 298
           A+SS I+ GAA   F     R    H+ H     C   S +C    F  DF   G     
Sbjct: 206 AQSSVILGGAAHRPFVAARVRVGGKHQIHRRGIDCQGGSRMCCRQEFFVDFREIGWHDWI 265

Query: 299 TSPIGYGAALFAFCVSSDDFHILGLPLIGCA 391
             P GY      FC+     HI G+P I  +
Sbjct: 266 IQPEGYA---MNFCIGQCPLHIAGMPGIAAS 293
tr_hit_id A8J383
Definition tr|A8J383|A8J383_CHLRE Predicted protein OS=Chlamydomonas reinhardtii
Align length 106
Score (bit) 39.7
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960655|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A02, 5'
         (686 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8J383|A8J383_CHLRE Predicted protein OS=Chlamydomonas reinha...    40   0.18 
tr|Q56WB1|Q56WB1_ARATH Putative uncharacterized protein At1g0532...    39   0.31 
tr|O23037|O23037_ARATH YUP8H12.6 protein OS=Arabidopsis thaliana...    39   0.31 
tr|Q4MZ00|Q4MZ00_THEPA Splicing factor, putative OS=Theileria pa...    38   0.69 
tr|A2DDR9|A2DDR9_TRIVA DNA polymerase OS=Trichomonas vaginalis G...    35   3.4  
tr|A0EGK0|A0EGK0_PARTE Chromosome undetermined scaffold_95, whol...    35   3.4  
tr|Q9VLZ5|Q9VLZ5_DROME CG13792 OS=Drosophila melanogaster GN=CG1...    35   4.5  
tr|B4Q5R2|B4Q5R2_DROSI GD22484 OS=Drosophila simulans GN=GD22484...    35   4.5  
tr|B4NZI9|B4NZI9_DROYA GE18347 OS=Drosophila yakuba GN=GE18347 P...    35   5.9  
tr|B4HZ09|B4HZ09_DROSE GM12734 OS=Drosophila sechellia GN=GM1273...    35   5.9  
tr|B3N6L7|B3N6L7_DROER GG23521 OS=Drosophila erecta GN=GG23521 P...    35   5.9  
tr|A2FK27|A2FK27_TRIVA Viral A-type inclusion protein, putative ...    34   7.7  

>tr|A8J383|A8J383_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_184636 PE=4 SV=1
          Length = 132

 Score = 39.7 bits (91), Expect = 0.18
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
 Frame = -1

Query: 431 ESKLCS*RRQEYQLHSRLVEDPKCGNHRCSRRKQKEQHHIRLEKSQNLENHNERKLS--- 261
           + KL   ++QE  +H  L    K       +++ +E H  + E+  NLE   E K S   
Sbjct: 16  KDKLAETKKQEAAVHEALKAQQKEAKIAKEQKRHEESHSFKEEREYNLELDPEGKHSKRA 75

Query: 260 CKEQ--------NTSSIADWGHGIHEKCKLCACREQKKQRHRRLEK 147
            KEQ          ++ A   HG+ ++CK+C  R  +K++H   E+
Sbjct: 76  VKEQRELLKHAEKAATGAMCQHGV-QRCKICFPRASEKEKHHEHER 120


>tr|Q56WB1|Q56WB1_ARATH Putative uncharacterized protein At1g05320
           OS=Arabidopsis thaliana GN=At1g05320 PE=2 SV=1
          Length = 699

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
 Frame = -2

Query: 553 KTEKAE-RFSCFQTLQIRDK*VSISTSI---NQRSLRQNLNAVTKKASSAHEEGKNTSCT 386
           K EKAE +    + +Q+++  +  + S+    +R L +NLNAV +K  S+ E  +  +  
Sbjct: 252 KLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQARE 311

Query: 385 AD*WKTQNVEIIA--AHAESKKSSTISDWRS 299
            D   T+++E+ A   H+E K   T+ D+ S
Sbjct: 312 IDEATTRSIELEALHKHSELKVQKTMEDFSS 342


>tr|O23037|O23037_ARATH YUP8H12.6 protein OS=Arabidopsis thaliana
           GN=YUP8H12.6 PE=4 SV=1
          Length = 841

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
 Frame = -2

Query: 553 KTEKAE-RFSCFQTLQIRDK*VSISTSI---NQRSLRQNLNAVTKKASSAHEEGKNTSCT 386
           K EKAE +    + +Q+++  +  + S+    +R L +NLNAV +K  S+ E  +  +  
Sbjct: 265 KLEKAEEKLKDLEAIQVKNSSLEATLSVAMEKERDLSENLNAVMEKLKSSEERLEKQARE 324

Query: 385 AD*WKTQNVEIIA--AHAESKKSSTISDWRS 299
            D   T+++E+ A   H+E K   T+ D+ S
Sbjct: 325 IDEATTRSIELEALHKHSELKVQKTMEDFSS 355


>tr|Q4MZ00|Q4MZ00_THEPA Splicing factor, putative OS=Theileria parva
           GN=TP03_0691 PE=4 SV=1
          Length = 644

 Score = 37.7 bits (86), Expect = 0.69
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -1

Query: 386 SRLVEDPKCGNHRCSRRKQKEQHHIRLEKSQNLENHNERKL----SCKEQNTSSIADWGH 219
           SR     +  +HR SRR    +H     +S++  +H ER++    S +  N     D G 
Sbjct: 229 SRSYRRSRSRSHRGSRRHHSHRHSRHRSRSRSKSSHREREVEYQKSDRTDNDREPRDIGL 288

Query: 218 GIHEKCKLCACREQKKQRHRRLEKIWR 138
            I EK K+    E +++R + +E+  R
Sbjct: 289 DIMEKAKILRSNEMERRRMKDIEEAQR 315


>tr|A2DDR9|A2DDR9_TRIVA DNA polymerase OS=Trichomonas vaginalis G3
           GN=TVAG_198840 PE=3 SV=1
          Length = 1367

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -1

Query: 338 RKQKEQHHIRLEKSQNLENHNERKLSCKEQNTSSIADWGH------GIHEKCKLCACREQ 177
           +  K +HH + +KS+N   H E+  + K  NT+   +  H         +K K    + Q
Sbjct: 361 KSDKSRHHSKSDKSKNTNKHKEKSKNSKSDNTNKNEEISHISKSDINKSDKAKASDTKNQ 420

Query: 176 KKQRHR 159
            +++H+
Sbjct: 421 NEEKHK 426


>tr|A0EGK0|A0EGK0_PARTE Chromosome undetermined scaffold_95, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00026765001 PE=4 SV=1
          Length = 535

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
 Frame = -1

Query: 440 RHQESKLCS*RRQEYQLHSRLVEDPKCGNHRCSRRKQKEQH---------HIRLEKSQNL 288
           +HQE K       E++L +R+      G       KQ+E+H         H R +  Q  
Sbjct: 320 QHQEEK-------EFELFNRV------GQRMEKAEKQQEEHDKQLSRFQFHKRKQLEQRF 366

Query: 287 ENHNERKLSCKEQNTSSIADWGHGIHEKCKLCACREQKKQRHRRLEKIWR--RSFGFL-H 117
             H +R    +E+    +A+W   + +   +    E+ + +    +KIW+  RS  F  H
Sbjct: 367 SRHRKRYQESEERQQEKVAEW---MQKVSSIQERIEKFRSKKNEDQKIWKEQRSQSFKDH 423

Query: 116 EQSLLFP*FPQMGTPVEIMEKENLAHAESKKSR 18
            +++ F    Q    ++  EK     ++ KKS+
Sbjct: 424 LENMQFNRKSQEKDSMKYFEKHQYVQSKLKKSK 456


>tr|Q9VLZ5|Q9VLZ5_DROME CG13792 OS=Drosophila melanogaster
           GN=CG13792 PE=2 SV=1
          Length = 773

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 14/63 (22%), Positives = 34/63 (53%)
 Frame = -1

Query: 344 SRRKQKEQHHIRLEKSQNLENHNERKLSCKEQNTSSIADWGHGIHEKCKLCACREQKKQR 165
           +R+   E+H +RL+++     H+E  +S  + N  +++  G G+ +    C  +  +K+ 
Sbjct: 560 ARKSYSERHLVRLKQTAINNTHSEDDMSFNDDNNQTVSSQGQGLRQ----CGIQYNQKEH 615

Query: 164 HRR 156
           H++
Sbjct: 616 HQK 618


>tr|B4Q5R2|B4Q5R2_DROSI GD22484 OS=Drosophila simulans GN=GD22484
           PE=4 SV=1
          Length = 773

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 14/63 (22%), Positives = 34/63 (53%)
 Frame = -1

Query: 344 SRRKQKEQHHIRLEKSQNLENHNERKLSCKEQNTSSIADWGHGIHEKCKLCACREQKKQR 165
           +R+   E+H +RL+++     H+E  +S  + N  +++  G G+ +    C  +  +K+ 
Sbjct: 560 ARKSYSERHLVRLKQTAINNTHSEDDMSFNDDNNQTVSSQGQGLRQ----CGIQYNQKEH 615

Query: 164 HRR 156
           H++
Sbjct: 616 HQK 618


>tr|B4NZI9|B4NZI9_DROYA GE18347 OS=Drosophila yakuba GN=GE18347 PE=4
           SV=1
          Length = 776

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 14/63 (22%), Positives = 34/63 (53%)
 Frame = -1

Query: 344 SRRKQKEQHHIRLEKSQNLENHNERKLSCKEQNTSSIADWGHGIHEKCKLCACREQKKQR 165
           +R+   E+H +RL+++     H+E  +S  + N  +++  G G+ +    C  +  +K+ 
Sbjct: 557 ARKSYSERHLVRLKQTAINNTHSEDDVSFNDDNNQTVSSQGQGLRQ----CGIQYNQKEH 612

Query: 164 HRR 156
           H++
Sbjct: 613 HQK 615


>tr|B4HZ09|B4HZ09_DROSE GM12734 OS=Drosophila sechellia GN=GM12734
            PE=4 SV=1
          Length = 3582

 Score = 34.7 bits (78), Expect = 5.9
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = -1

Query: 386  SRLVEDPKCGNHRCSRRKQKEQHHIRLEKSQNLENHNERKLSCKEQNTSSIADWGHGIHE 207
            S+ + +P C  H   +++QKEQ   + + +Q LE   +R  S +++ +     +G     
Sbjct: 1086 SKYLTEPPCHYHAHQQQQQKEQQQQQEQDNQKLEQDLQRHSSGQQKRSGQAQTFGQQTFA 1145

Query: 206  KCKLCACREQKKQRHR 159
            K +  A   Q++Q+ R
Sbjct: 1146 KDQDNALSSQRQQQRR 1161