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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960660
Clone id TST39A01NGRL0008_A07
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AAGGAATCCCAACGAATAAAAAACCAGTGACTTCAATCTTGCTCAAGTCTTGTAGCTTCC
TCCTTCCGCCAAAACCAGAATTTATATTCCTCCTCAGAAGAGAGCAGCAATGTAGAGAGA
TCTCACACAATTATCCCATATACACATGGAAGAAAGTAGACCTCGCTCTACAGGGACTAA
TTGTAGCAAGCACAATTTTGCTTCATAGCTCTACCTGTAGTACATTATATGTGGATCCTT
CTCCCCCCAGCCATGGCACCGCAATGCCAGCGCGGTTGGCATTGCTAGACAACTCTAATC
GGATCTGCGACTTCCGTCCGCACGCAGAGATACATATCCCAAATGGTGAAGAAGCAACCA
GGCACAAATTACATACAGAAATCAGAGAGCTGCCCCCCTGAGCTTATTGGTGGCCACATC
TCAAGATGGGGGCTGACCAAACTGCACATGAAAGAGCAATTGGTCAAGGCCGGCGAGCAC
CTTAGCAGTCGCCGGCCCAGCTTTCAAGCCGATGAGTTAACCCCACAGGAATACACAGAT
GGTAAGCCCGTCGTGCTCGTGGGGCCTGTCATTGGCCTTGTCACGAGTACGTCTGCCCGC
ATCCTTCTTGAGGTAGATAGAAATGCCACTGTGGAGATGATTCTTCATAGAGAAGAGGCA
TCGCCCATGGGCTATCTCACAGATGAA
■■Homology search results ■■ -
sp_hit_id Q2R2W1
Definition sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 OS=Oryza sativa subsp. japonica
Align length 82
Score (bit) 34.3
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960660|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A07, 5'
         (687 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 OS=Oryza sativa subsp...    34   0.64 
sp|P0C152|MKS3_RAT Meckelin OS=Rattus norvegicus GN=Tmem67 PE=1 ...    31   5.4  
sp|Q05BQ1|TUTLA_MOUSE Protein turtle homolog A OS=Mus musculus G...    31   7.1  
sp|Q8UGV3|Y932_AGRT5 UPF0260 protein Atu0932 OS=Agrobacterium tu...    30   9.2  
sp|Q5KI53|NTE1_CRYNE Lysophospholipase NTE1 OS=Cryptococcus neof...    30   9.3  

>sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 OS=Oryza sativa subsp.
           japonica GN=Os11g0547000 PE=2 SV=2
          Length = 630

 Score = 34.3 bits (77), Expect = 0.64
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
 Frame = +1

Query: 259 PQCQRGWHC*TTLIGSATSVR----------TQRYISQMVKKQPGTNYIQKSESCPPELI 408
           P   R WH   TL GS   V           +  ++  + K++P    I  S S PP  +
Sbjct: 417 PPLPRSWHSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWKEIPTSWS-PPSRL 475

Query: 409 GGHISRWGLTKLHMKEQLVKAG 474
           G  +S +G TKL M   L K+G
Sbjct: 476 GHTLSVFGKTKLFMFGGLAKSG 497


>sp|P0C152|MKS3_RAT Meckelin OS=Rattus norvegicus GN=Tmem67 PE=1
           SV=1
          Length = 992

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 500 LGRRLLRCSPALTNCSFMCSLVSPHLEMWPPISSGG 393
           LG R +RC P   N S  CS   PH      IS+GG
Sbjct: 166 LGTRCVRCEPTFVNTSRSCSCSEPH------ISTGG 195


>sp|Q05BQ1|TUTLA_MOUSE Protein turtle homolog A OS=Mus musculus
           GN=Igsf9 PE=1 SV=2
          Length = 1179

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 24  PVTSILLKSC-SFLLPPKPEFIFLLRREQ--QCREISHNYPIYTWKKVDLALQG 176
           PVT +LLK+  +F+  PK E+   + RE    C       PI +W KV   LQG
Sbjct: 408 PVTQVLLKAPPAFIDQPKEEYFQEVGRELLIPCSARGDPPPIVSWAKVGRGLQG 461


>sp|Q8UGV3|Y932_AGRT5 UPF0260 protein Atu0932 OS=Agrobacterium
           tumefaciens (strain C58 / ATCC 33970) GN=Atu0932 PE=3
           SV=1
          Length = 162

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
 Frame = +3

Query: 273 RLALLDNSNRICDFRPHAEIHIPNGEEATRHKLHTEIRELPP*A-----------YWWPH 419
           R  LLD  +  C    +    +P+  +    K+H EI  LPP             YWW +
Sbjct: 52  RCVLLDGESCRCSDYENRRATVPDCIQLDLKKVH-EIGWLPPTCAYALVRDGKDLYWWHY 110

Query: 420 LKMGADQTAHERAI 461
           L  G  +T HE  I
Sbjct: 111 LVSGDIETVHEAGI 124


>sp|Q5KI53|NTE1_CRYNE Lysophospholipase NTE1 OS=Cryptococcus
            neoformans GN=NTE1 PE=3 SV=2
          Length = 1621

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 22/80 (27%), Positives = 32/80 (40%)
 Frame = -1

Query: 669  HGRCLFSMKNHLHSGISIYLKKDAGRRTRDKANDRPHEHDGLTICVFLWG*LIGLKAGPA 490
            H     +   HL   +   +KK  G R   +    PH +D   I   L G  IGL  G  
Sbjct: 1262 HDAAAIAAFKHLREQVETRIKKYRGLRPFTRPRRPPHMNDFARIARRLCGQQIGLVLGGG 1321

Query: 489  TAKVLAGLDQLLFHVQFGQP 430
             A+ ++ +  L    +FG P
Sbjct: 1322 GARGISHIGMLQALEEFGIP 1341
tr_hit_id Q085D5
Definition tr|Q085D5|Q085D5_SHEFN RseP peptidase. Metallo peptidase. MEROPS family M50B OS=Shewanella frigidimarina (strain NCIMB 400)
Align length 103
Score (bit) 36.2
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960660|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A07, 5'
         (687 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q085D5|Q085D5_SHEFN RseP peptidase. Metallo peptidase. MEROPS...    36   2.0  
tr|A3CC67|A3CC67_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.6  
tr|A2ZF69|A2ZF69_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.6  
tr|B7ZZM2|B7ZZM2_MAIZE Putative uncharacterized protein OS=Zea m...    34   10.0 

>tr|Q085D5|Q085D5_SHEFN RseP peptidase. Metallo peptidase. MEROPS
           family M50B OS=Shewanella frigidimarina (strain NCIMB
           400) GN=Sfri_1277 PE=4 SV=1
          Length = 456

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 33/103 (32%), Positives = 43/103 (41%)
 Frame = +3

Query: 3   GIPTNKKPVTSILLKSCSFLLPPKPEFIFLLRREQQCREISHNYPIYTWKKVDLALQGLI 182
           G P+ K  + S  L S        P  +  L   QQ   +S   P+ TW++V+LAL G I
Sbjct: 123 GTPSIKPVIDSTKLNS--------PASVIQLVEPQQIIAVS-GQPVRTWEEVNLALVGHI 173

Query: 183 VASTILLHSSTCSTLYVDPSPPSHGTAMPARLALLDNSNRICD 311
              +I         L + P P   G  MP R   LD  N I D
Sbjct: 174 GDDSI--------ELSLAPLPELSGMDMPVRTVKLDTRNWIFD 208


>tr|A3CC67|A3CC67_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032889 PE=4 SV=1
          Length = 645

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
 Frame = +1

Query: 259 PQCQRGWHC*TTLIGSATSVR----------TQRYISQMVKKQPGTNYIQKSESCPPELI 408
           P   R WH   TL GS   V           +  ++  + K++P    I  S S PP  +
Sbjct: 432 PPLPRSWHSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWKEIPTSWS-PPSRL 490

Query: 409 GGHISRWGLTKLHMKEQLVKAG 474
           G  +S +G TKL M   L K+G
Sbjct: 491 GHTLSVFGKTKLFMFGGLAKSG 512


>tr|A2ZF69|A2ZF69_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36431 PE=4 SV=1
          Length = 509

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
 Frame = +1

Query: 259 PQCQRGWHC*TTLIGSATSVR----------TQRYISQMVKKQPGTNYIQKSESCPPELI 408
           P   R WH   TL GS   V           +  ++  + K++P    I  S S PP  +
Sbjct: 296 PPLPRSWHSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWKEIPTSWS-PPSRL 354

Query: 409 GGHISRWGLTKLHMKEQLVKAG 474
           G  +S +G TKL M   L K+G
Sbjct: 355 GHTLSVFGKTKLFMFGGLAKSG 376


>tr|B7ZZM2|B7ZZM2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 513

 Score = 33.9 bits (76), Expect = 10.0
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
 Frame = +1

Query: 259 PQCQRGWHC*TTLIGSATSVR----------TQRYISQMVKKQPGTNYIQKSESCPPELI 408
           P   R WH   TL GS   V           +  ++  + K++P    I  S S PP  +
Sbjct: 296 PPLPRSWHSSCTLDGSKLVVSGGCTESGVLLSDTFLLDLTKEKPAWREIPTSWS-PPSRL 354

Query: 409 GGHISRWGLTKLHMKEQLVKAG 474
           G  +S +G TKL M   L K+G
Sbjct: 355 GHTMSVYGTTKLLMFGGLAKSG 376