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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960662
Clone id TST39A01NGRL0008_A09
Library
Length 645
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCAAGTCGTCCATCGTAATCTGGGACTCCAAGACATCAAAGTAAGCTCCAGTGACTAGA
TCTGATGGGGGTCGTTGGGCTTTGTCGATCAGCTGCTGTTCACGAGCCCCTCTCTCTTGC
CCTTCACCTCTTCAAAAGTGCCAAATTCTCTAATGATCGCATCAGAATGCGGTGTTGAAA
AGTTTGCAGCTCTAATGGAGGGCTTTGCAGAAAGCCAACCACAGCAACGTCAAACGTCAA
TGTACATTACAGGAAGCTGAAGCTTCACTTTTGGAGCTGGAACCTATGGCAACACACTAC
AAACATGCAGGAAACTATACACCCATTGGGTCGGATCGGTGTGATGTTGAGATATGGAGG
ATTTTCTCACAAAGGAAGTTCATGTGTTTTTCATGCGCCCTTCTTCTTCTGCCATTTGTG
TTTGCACTTTTCTCCTCCATTTCAGTGGACAACTACATTGGAGGACGAGAGCCCCTGCCC
TCTTCGCAACCAGATGTAACAAAATTGATCGACTTTGCTGTAGGAGGATGCAACATATGG
AAGGGAGAATGGATCCCCCACCCCACAGAGCCTGCTTATTCAAACAGAACTTGCCCATTT
ATTCAAGACCATCANAATTGCTTAAAGAATGGGCGTCCAGACCAT
■■Homology search results ■■ -
sp_hit_id Q9U405
Definition sp|Q9U405|GRAU_DROME Transcription factor grauzone OS=Drosophila melanogaster
Align length 47
Score (bit) 36.6
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960662|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A09, 5'
         (645 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9U405|GRAU_DROME Transcription factor grauzone OS=Drosophila...    37   0.11 
sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase sma...    30   8.2  
sp|Q27902|CP6B4_PAPGL Cytochrome P450 6B4 OS=Papilio glaucus GN=...    30   8.2  

>sp|Q9U405|GRAU_DROME Transcription factor grauzone OS=Drosophila
           melanogaster GN=grau PE=1 SV=1
          Length = 570

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 215 PTTATSNVNVHYRKLKLHFWSWNLWQHT-TNMQETIHPLGRIGVMLR 352
           P T  SN N+H  K K+H   W++W+ T T   + + P  ++  M R
Sbjct: 510 PRTFNSNANMHSHKKKMHPVEWDIWRKTKTGSSQKVLPSAQVAQMFR 556


>sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase small
           subunit, chloroplastic/amyloplastic OS=Oryza sativa
           subsp. japonica GN=AGPS PE=2 SV=4
          Length = 514

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -2

Query: 575 AGSVGWGIHSPFHMLHPPTAKSINFVTSGCEEGRGSRPPM*LSTEMEEKSANTNGRRRR 399
           A +   G+ SP+H  H   + S + +     EGR  RP    S+     SA   GRRRR
Sbjct: 2   AMAAAMGVASPYHAAHAAASTSCDSLRLLVAEGRPRRPRGVASSSSSSSSA---GRRRR 57


>sp|Q27902|CP6B4_PAPGL Cytochrome P450 6B4 OS=Papilio glaucus
           GN=CYP6B4 PE=2 SV=1
          Length = 500

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 123 FTSSKVPNSLMIASECGVEKFAALMEGFAESQPQQR 230
           FTS K+ N L + S+ G +KF  ++E F + +P+Q+
Sbjct: 134 FTSGKLKNMLNLMSDRG-DKFIKMVEKFCDKEPEQQ 168
tr_hit_id Q6I5B4
Definition tr|Q6I5B4|Q6I5B4_ORYSJ Os05g0214900 protein OS=Oryza sativa subsp. japonica
Align length 53
Score (bit) 69.3
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960662|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A09, 5'
         (645 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6I5B4|Q6I5B4_ORYSJ Os05g0214900 protein OS=Oryza sativa subs...    69   2e-10
tr|B8AZ77|B8AZ77_ORYSI Putative uncharacterized protein OS=Oryza...    69   2e-10
tr|B6TAV4|B6TAV4_MAIZE Putative uncharacterized protein OS=Zea m...    65   3e-09
tr|B4FMK8|B4FMK8_MAIZE Putative uncharacterized protein OS=Zea m...    65   3e-09
tr|B4FBF8|B4FBF8_MAIZE Putative uncharacterized protein OS=Zea m...    65   3e-09
tr|A9RCM6|A9RCM6_PHYPA Predicted protein OS=Physcomitrella paten...    62   3e-08
tr|Q5VQ37|Q5VQ37_ORYSJ Leaf senescence protein-like OS=Oryza sat...    60   1e-07
tr|Q0DCZ4|Q0DCZ4_ORYSJ Os06g0272800 protein OS=Oryza sativa subs...    60   1e-07
tr|B8B0J4|B8B0J4_ORYSI Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|A5C5G9|A5C5G9_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|A3BAK7|A3BAK7_ORYSJ Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|Q8RUC0|Q8RUC0_ORYSJ Leaf senescence protein-like (Putative un...    60   1e-07
tr|A9T2B6|A9T2B6_PHYPA Predicted protein (Fragment) OS=Physcomit...    60   1e-07
tr|A2WTA9|A2WTA9_ORYSI Putative uncharacterized protein OS=Oryza...    60   1e-07
tr|A9TUK8|A9TUK8_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   2e-07
tr|A9SR73|A9SR73_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   2e-07
tr|Q84WC7|Q84WC7_ARATH Putative uncharacterized protein At4g0108...    59   3e-07
tr|Q6YWS2|Q6YWS2_ORYSJ Leaf senescence protein-like OS=Oryza sat...    59   3e-07
tr|Q58H56|Q58H56_BRANA Putative uncharacterized protein OS=Brass...    59   3e-07
tr|Q0DXX0|Q0DXX0_ORYSJ Os02g0729100 protein OS=Oryza sativa subs...    59   3e-07
tr|O04621|O04621_ARATH A_IG002N01.14 protein (At4g01080) (Putati...    59   3e-07
tr|A3AAZ8|A3AAZ8_ORYSJ Putative uncharacterized protein OS=Oryza...    59   3e-07
tr|A2X975|A2X975_ORYSI Putative uncharacterized protein OS=Oryza...    59   3e-07
tr|Q1KUW9|Q1KUW9_9ROSI Putative uncharacterized protein OS=Cleom...    59   3e-07
tr|A5BFA6|A5BFA6_VITVI Putative uncharacterized protein OS=Vitis...    59   3e-07
tr|Q9M896|Q9M896_ARATH F16B3.7 protein OS=Arabidopsis thaliana G...    58   4e-07
tr|Q9LFT0|Q9LFT0_ARATH Putative uncharacterized protein F1N13_40...    58   4e-07
tr|Q84JH9|Q84JH9_ARATH Putative uncharacterized protein At1g0143...    58   6e-07
tr|Q2R1Y7|Q2R1Y7_ORYSJ Putative uncharacterized protein OS=Oryza...    58   6e-07
tr|Q0IRY3|Q0IRY3_ORYSJ Os11g0586800 protein OS=Oryza sativa subs...    58   6e-07

>tr|Q6I5B4|Q6I5B4_ORYSJ Os05g0214900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0067H15.17 PE=4 SV=1
          Length = 245

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = +1

Query: 484 SQPDVTKLIDFAVGGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           S P  T   + + G CN++ GEWIP+P+ PAY+N+TC FI  H NC+ NGRPD
Sbjct: 58  SFPSSTSSPEISEGKCNLFDGEWIPNPSGPAYTNKTCRFIDGHQNCMLNGRPD 110


>tr|B8AZ77|B8AZ77_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18899 PE=4 SV=1
          Length = 245

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = +1

Query: 484 SQPDVTKLIDFAVGGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           S P  T   + + G CN++ GEWIP+P+ PAY+N+TC FI  H NC+ NGRPD
Sbjct: 58  SFPSSTSSPEISEGKCNLFDGEWIPNPSGPAYTNKTCRFIDGHQNCMLNGRPD 110


>tr|B6TAV4|B6TAV4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 417

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 24/40 (60%), Positives = 32/40 (80%)
 Frame = +1

Query: 523 GGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           G C+++ GEWIP+P+ PAY+N +C FI DH NC+ NGRPD
Sbjct: 64  GKCSLFNGEWIPNPSGPAYTNASCRFIDDHQNCMMNGRPD 103


>tr|B4FMK8|B4FMK8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 417

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 24/40 (60%), Positives = 32/40 (80%)
 Frame = +1

Query: 523 GGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           G C+++ GEWIP+P+ PAY+N +C FI DH NC+ NGRPD
Sbjct: 64  GKCSLFNGEWIPNPSGPAYTNASCRFIDDHQNCMMNGRPD 103


>tr|B4FBF8|B4FBF8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 189

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 24/40 (60%), Positives = 32/40 (80%)
 Frame = +1

Query: 523 GGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           G C+++ GEWIP+P+ PAY+N +C FI DH NC+ NGRPD
Sbjct: 64  GKCSLFNGEWIPNPSGPAYTNASCRFIDDHQNCMMNGRPD 103


>tr|A9RCM6|A9RCM6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64155 PE=4 SV=1
          Length = 374

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 29/60 (48%), Positives = 36/60 (60%)
 Frame = +1

Query: 463 GREPLPSSQPDVTKLIDFAVGGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           G  P P+S    T     + G CN+ +G+WIP  T P Y++ TC FIQ H NC KNGRPD
Sbjct: 3   GTPPTPTSHD--TSYGPTSQGECNLEQGKWIPDSTSPQYNSTTCRFIQGHQNCHKNGRPD 60


>tr|Q5VQ37|Q5VQ37_ORYSJ Leaf senescence protein-like OS=Oryza sativa
           subsp. japonica GN=P0662B01.34 PE=4 SV=1
          Length = 423

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +1

Query: 481 SSQPDVTKLIDFAVGGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           SS P   K  D A   CNI++GEW+P P  P Y+N TC  I +H +C+K G+PD
Sbjct: 58  SSSPGGQKAADEA---CNIFRGEWVPDPDAPYYTNNTCSVIHEHYDCMKYGKPD 108


>tr|Q0DCZ4|Q0DCZ4_ORYSJ Os06g0272800 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0272800 PE=4 SV=1
          Length = 822

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +1

Query: 481 SSQPDVTKLIDFAVGGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           SS P   K  D A   CNI++GEW+P P  P Y+N TC  I +H +C+K G+PD
Sbjct: 58  SSSPGGQKAADEA---CNIFRGEWVPDPDAPYYTNNTCSVIHEHYDCMKYGKPD 108



 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
 Frame = +1

Query: 463 GREPLPSS-QPDV-TKLIDFAVG---GCNIWKGEWIPHPT--EPAYSNRTCPFIQDHXNC 621
           GR PLP    P+V TK  D   G   GC+I+KGEW+P      P Y++ +CP I  H +C
Sbjct: 443 GRVPLPLLLAPEVMTKTADGVGGDTSGCDIFKGEWVPDMAGEPPPYTSESCPVIHGHYDC 502

Query: 622 LKNGRPD 642
           ++ GRPD
Sbjct: 503 MRYGRPD 509


>tr|B8B0J4|B8B0J4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22495 PE=4 SV=1
          Length = 423

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +1

Query: 481 SSQPDVTKLIDFAVGGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           SS P   K  D A   CNI++GEW+P P  P Y+N TC  I +H +C+K G+PD
Sbjct: 58  SSSPGGQKAADEA---CNIFRGEWVPDPDAPYYTNNTCSVIHEHYDCMKYGKPD 108


>tr|A5C5G9|A5C5G9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028215 PE=4 SV=1
          Length = 420

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 23/59 (38%), Positives = 36/59 (61%)
 Frame = +1

Query: 466 REPLPSSQPDVTKLIDFAVGGCNIWKGEWIPHPTEPAYSNRTCPFIQDHXNCLKNGRPD 642
           R+P+P  +             C+++ G+WIP+P+ P Y+N +C  I+ H NC+KNGRPD
Sbjct: 64  RDPIPEKEK------------CDLFTGDWIPNPSGPVYTNESCQLIETHQNCMKNGRPD 110