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NBDC - LSDB Archive
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DK960672
Clone id TST39A01NGRL0008_A19
Library
Length 276
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTTCTATTCTTCACCCACTATTCCTCCTTACCTCCGTCAGAACGCCCTACCAATGCCCTG
TTTCTCTCCGTCCTAATCTATCTCAGGTTCTTGCACCTGCCCCATTCACCTTGATTCTCT
CCTACATGCATATTTTCATCTCCCCACCCGTTGTTAAGATTTCCCGAAAAACCCATCCAA
CAGAAACTTCTCCCGAGACTTGATTTGTGTTTATTTCCTCATCATCTCTGCTCGTGCCAT
TACCCACACCTCCACAGATGATTCCTGTGACGTTTC
■■Homology search results ■■ -
sp_hit_id Q8S4P6
Definition sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea mays
Align length 49
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960672|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A19, 5'
         (276 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Ze...    32   1.3  
sp|P39118|GLGB_BACSU 1,4-alpha-glucan-branching enzyme OS=Bacill...    31   1.7  
sp|Q99PD6|TGFI1_RAT Transforming growth factor beta-1-induced tr...    30   3.7  
sp|Q62219|TGFI1_MOUSE Transforming growth factor beta-1-induced ...    30   3.7  
sp|O43294|TGFI1_HUMAN Transforming growth factor beta-1-induced ...    30   3.7  
sp|Q1JQB5|FBLI1_BOVIN Filamin-binding LIM protein 1 OS=Bos tauru...    30   3.7  
sp|Q9D7G4|EURL_MOUSE Protein EURL homolog OS=Mus musculus GN=Eur...    30   4.9  
sp|Q5QVL2|TGT_IDILO Queuine tRNA-ribosyltransferase OS=Idiomarin...    30   4.9  
sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabido...    30   4.9  

>sp|Q8S4P6|EZ1_MAIZE Histone-lysine N-methyltransferase EZ1 OS=Zea
           mays GN=EZ1 PE=2 SV=1
          Length = 931

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 182 CWMGFSGNLNNGWGDENMHVGENQGEWGRCKNLR*IRTERNRALVGRSD 36
           CW+G         GD  + V   +G+   C+N++ +  ++ R L+GRSD
Sbjct: 746 CWVGC--------GDGTLGVPNQRGDNYECRNMKLLLKQQQRVLLGRSD 786


>sp|P39118|GLGB_BACSU 1,4-alpha-glucan-branching enzyme OS=Bacillus
           subtilis GN=glgB PE=2 SV=1
          Length = 627

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 24/74 (32%), Positives = 31/74 (41%)
 Frame = +1

Query: 10  FTHYSSLPPSERPTNALFLSVLIYLRFLHLPHSP*FSPTCIFSSPHPLLRFPEKPIQQKL 189
           FTH   LP  E P          Y R      +  +SPT  F  PH L++F ++  QQ +
Sbjct: 185 FTHIELLPVYEHP----------YDRSWGYQGTGYYSPTSRFGPPHDLMKFVDECHQQNI 234

Query: 190 LPRLDLCLFPHHLC 231
              LD    P H C
Sbjct: 235 GVILD--WVPGHFC 246


>sp|Q99PD6|TGFI1_RAT Transforming growth factor beta-1-induced
           transcript 1 protein OS=Rattus norvegicus GN=Tgfb1i1
           PE=1 SV=2
          Length = 461

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 115 FSPTCIFSSPHPLLRFPEKPIQQKLLPRLDLCLFPHHLC--SCHYP 246
           F P C F    P   F  +PI+ K++  L     P H C  SC  P
Sbjct: 274 FCPECYFERFSPRCGFCNQPIRHKMVTALGTHWHPEHFCCVSCGEP 319


>sp|Q62219|TGFI1_MOUSE Transforming growth factor beta-1-induced
           transcript 1 protein OS=Mus musculus GN=Tgfb1i1 PE=1
           SV=2
          Length = 461

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 115 FSPTCIFSSPHPLLRFPEKPIQQKLLPRLDLCLFPHHLC--SCHYP 246
           F P C F    P   F  +PI+ K++  L     P H C  SC  P
Sbjct: 274 FCPECYFERFSPRCGFCNQPIRHKMVTALGTHWHPEHFCCVSCGEP 319


>sp|O43294|TGFI1_HUMAN Transforming growth factor beta-1-induced
           transcript 1 protein OS=Homo sapiens GN=TGFB1I1 PE=1
           SV=2
          Length = 461

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = +1

Query: 115 FSPTCIFSSPHPLLRFPEKPIQQKLLPRLDLCLFPHHLC--SCHYP 246
           F P C F    P   F  +PI+ K++  L     P H C  SC  P
Sbjct: 274 FCPECYFERFSPRCGFCNQPIRHKMVTALGTHWHPEHFCCVSCGEP 319


>sp|Q1JQB5|FBLI1_BOVIN Filamin-binding LIM protein 1 OS=Bos taurus
           GN=FBLIM1 PE=2 SV=1
          Length = 378

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
 Frame = +1

Query: 31  PPSERPTNALFLSVLIYLRFLHLPHSP*FSPTCIFSSPHPLLRFPE--KPIQQKLLP--- 195
           PP E P +A+  S++  L  LHLP  P   P  +   P PL   P   KP +++L P   
Sbjct: 116 PPDEEPHSAMGASLISDLEQLHLPPPP-PPPQALVEGP-PLQPRPSHLKPAEEELPPPPE 173

Query: 196 ----------RLDLCLFPHHLCS 234
                       D+C F H   S
Sbjct: 174 EPVSFPEREASTDICAFCHKTVS 196


>sp|Q9D7G4|EURL_MOUSE Protein EURL homolog OS=Mus musculus GN=Eurl
           PE=2 SV=1
          Length = 290

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 127 CIFSSPHPLLRFPEKPIQQKLLPRLD 204
           C  +S HPLL F  KP ++KLLP+ D
Sbjct: 112 CSKTSQHPLLNFRHKP-EKKLLPQFD 136


>sp|Q5QVL2|TGT_IDILO Queuine tRNA-ribosyltransferase OS=Idiomarina
           loihiensis GN=tgt PE=3 SV=1
          Length = 373

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 HIFISPPVVKISRKTHPTETSP 194
           H+FIS  VVKI    H T+TSP
Sbjct: 276 HLFISTGVVKIRNAVHRTDTSP 297


>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1
           OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3
          Length = 980

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 271 VTGIICGGVGNGTSRDDEEINTNQVSGEVSVGWVFREILTT--GGEMKICM*ERI 113
           +TG I  G+GN TS    +++ N +SG V +G  F     T   G   +C+  R+
Sbjct: 564 LTGSIPTGIGNMTSLTTLDLSFNDLSGRVPLGGQFLVFNETSFAGNTYLCLPHRV 618
tr_hit_id B4PT72
Definition tr|B4PT72|B4PT72_DROYA GE25885 OS=Drosophila yakuba
Align length 59
Score (bit) 37.0
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960672|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A19, 5'
         (276 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4PT72|B4PT72_DROYA GE25885 OS=Drosophila yakuba GN=GE25885 P...    37   0.50 
tr|B8A039|B8A039_MAIZE Putative uncharacterized protein OS=Zea m...    33   5.5  
tr|Q9PVZ2|Q9PVZ2_XENLA Nucleoporin CAN OS=Xenopus laevis GN=CAN ...    33   9.4  
tr|Q7ZWQ9|Q7ZWQ9_XENLA MGC52541 protein OS=Xenopus laevis GN=MGC...    33   9.4  

>tr|B4PT72|B4PT72_DROYA GE25885 OS=Drosophila yakuba GN=GE25885 PE=4
           SV=1
          Length = 1392

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
 Frame = +3

Query: 33  SVRTPYQCPVS--------LRPNLSQVLAPAPFTLILSYMHIFISP---PVVKISRKTH 176
           S R PY CP S        LR   +    PAP  L+LS  H F +P   PVVK+ R  H
Sbjct: 256 SGRAPYSCPTSPSSPSSAGLRRTYTMEKGPAPGQLLLSPSHSFNTPSKQPVVKVKRFNH 314


>tr|B8A039|B8A039_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 774

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 274 NVTGIICGGVGNGTSRDDEEINTNQVSGEVSVGWVFREILT 152
           N+TG I  G+GN TS +  +I+ NQ+SGE+     + ++ T
Sbjct: 16  NLTGTIPEGIGNCTSFEILDISYNQISGEIPYNIGYLQVAT 56


>tr|Q9PVZ2|Q9PVZ2_XENLA Nucleoporin CAN OS=Xenopus laevis GN=CAN
           PE=2 SV=1
          Length = 2037

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 36  VRTPYQCPVSLRPNLSQVLAPAPFTLILSYMHIFISPPVVKISRKTHPTETSPE 197
           V   Y C + +  + SQ+L P P  L+LS   +     VV +++   P  TSPE
Sbjct: 364 VALDYTCQLEVFISESQILPPVPVLLLLSTDGVLCPFHVVNLNQGVKPLTTSPE 417


>tr|Q7ZWQ9|Q7ZWQ9_XENLA MGC52541 protein OS=Xenopus laevis
           GN=MGC52541 PE=2 SV=1
          Length = 694

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 36  VRTPYQCPVSLRPNLSQVLAPAPFTLILSYMHIFISPPVVKISRKTHPTETSPE 197
           V   Y C + +  + SQ+L P P  L+LS   +     VV +++   P  TSPE
Sbjct: 364 VALDYTCQLEVFISESQILPPVPVLLLLSTDGVLCPFHVVNLNQGVKPLTTSPE 417