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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960676
Clone id TST39A01NGRL0008_A23
Library
Length 674
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AAGAGCCAGGCTTGCAGGGTTGTCCATTGGGTTTGCGCTTTCTTACGAAGATGGCCTTAT
ATGGATACGACTTGAGCGCGCACATGGACTCAGACCCCTCAGATTCATTCAAGACTCTAA
AAAAGACGGGCATGCAAGCATTTGGATCTTTTTATGGTGGGTATCTCACAGCCTTGGAGC
GCCTTATTAAGAATTCCAATTTCTCAGCTGGAACAGATTCATATAATCTGTCGAACTTGG
AGAAATCAGAGTATGTGATACGGAGAAGGAATGGTCCACTGGTCTATGATTTCCTCAATC
CACAAACGGTGGCCTATCAAGCTGCTTTATTGGACCTCAGTGAGGAAGAAGTCGAAGAGA
GAGTGTTGCAACAACTACTGCGTCAGAGGAAGCATCTTTTAGACGAGCTTCTTGATCAGC
TTGGCATACCCACATCAGGAGAAGAGGTGTTGAACAACATGTGGTGTGGCACCTTCTCCA
AAGAGAGCAAAGCGGATATGCTGTTCTTCCATGGGGATGAGGCATTCTTGGTCTCTGCAA
AACGCGCACAAGGAGCACAAGAGTGGCAATCCTGCTTTGTGCGTGTCCTGGATTCGATCA
GCAAGGAGTGGAAGCATCTGGATAAGGAGTTGTGTGGACTGCTTGTAGCGGCTACCAAGT
TGCGGCTTGTTGCT
■■Homology search results ■■ -
sp_hit_id P56721
Definition sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila melanogaster
Align length 85
Score (bit) 34.3
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960676|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A23, 5'
         (674 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila ...    34   0.62 
sp|Q6DCC6|GTPB6_XENLA Putative GTP-binding protein 6 OS=Xenopus ...    30   8.9  

>sp|P56721|COLL_DROME Transcription factor collier OS=Drosophila
           melanogaster GN=kn PE=2 SV=2
          Length = 575

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 90  LYDRAGQPI---EIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRL 146

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS++K     E +  + E+C +L+
Sbjct: 147 IDSVTKQAIIYEGQDKNPEMCRVLL 171


>sp|Q6DCC6|GTPB6_XENLA Putative GTP-binding protein 6 OS=Xenopus
           laevis GN=gtpbp6 PE=2 SV=1
          Length = 527

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
 Frame = +1

Query: 484 RAKRICCS-------SMGMRHSWSLQNAHKEHKSGNPALCVSWIRSARSGS 615
           RA R CCS       +   RHS  L +AHK H +G+  L +S IR   SGS
Sbjct: 8   RAVRCCCSYSLHKTVTFQARHS--LYSAHKVHSNGHFHLPLSGIRCFFSGS 56
tr_hit_id Q0ZDR5
Definition tr|Q0ZDR5|Q0ZDR5_9TELE Recombination activating protein 1 (Fragment) OS=Loricaria simillima
Align length 67
Score (bit) 37.4
E-value 0.87
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960676|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A23, 5'
         (674 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0ZDR5|Q0ZDR5_9TELE Recombination activating protein 1 (Fragm...    37   0.87 
tr|A8PIM4|A8PIM4_BRUMA Kinesin motor domain containing protein O...    36   1.9  
tr|Q0ZDR7|Q0ZDR7_9TELE Recombination activating protein 1 (Fragm...    36   2.5  
tr|B3MGM8|B3MGM8_DROAN GF11778 OS=Drosophila ananassae GN=GF1177...    35   3.3  
tr|B5E039|B5E039_DROPS GA24435 OS=Drosophila pseudoobscura pseud...    34   7.4  
tr|B4QFY9|B4QFY9_DROSI GD25656 OS=Drosophila simulans GN=GD25656...    34   7.4  
tr|B4P7P4|B4P7P4_DROYA GE12286 OS=Drosophila yakuba GN=GE12286 P...    34   7.4  
tr|B4NND0|B4NND0_DROWI GK23295 OS=Drosophila willistoni GN=GK232...    34   7.4  
tr|B4LPT7|B4LPT7_DROVI GJ21945 OS=Drosophila virilis GN=GJ21945 ...    34   7.4  
tr|B4KQX3|B4KQX3_DROMO GI21022 OS=Drosophila mojavensis GN=GI210...    34   7.4  
tr|B4HRP7|B4HRP7_DROSE GM20182 OS=Drosophila sechellia GN=GM2018...    34   7.4  
tr|B4GAT0|B4GAT0_DROPE GL10656 OS=Drosophila persimilis GN=GL106...    34   7.4  
tr|B3NQS4|B3NQS4_DROER GG22397 OS=Drosophila erecta GN=GG22397 P...    34   7.4  
tr|A8DYD9|A8DYD9_DROME Knot, isoform C OS=Drosophila melanogaste...    34   7.4  
tr|B4J9B4|B4J9B4_DROGR GH20479 OS=Drosophila grimshawi GN=GH2047...    34   9.6  

>tr|Q0ZDR5|Q0ZDR5_9TELE Recombination activating protein 1
           (Fragment) OS=Loricaria simillima GN=rag1 PE=4 SV=1
          Length = 323

 Score = 37.4 bits (85), Expect = 0.87
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 478 PKRAKRICCSSMGMRHSWSLQNAHKEHKSGNPAL--CVSWIRSARSGSIWIRSCVDCL*R 651
           PKR KR  CSS+G    W          S NPA     +W++ +   S+W+++   C   
Sbjct: 126 PKRPKRDSCSSIGGSRVW-------RQTSDNPAAVGLRAWVKQSAQRSLWVKNITHCHRD 178

Query: 652 LPSCGLL 672
             SC LL
Sbjct: 179 HLSCSLL 185


>tr|A8PIM4|A8PIM4_BRUMA Kinesin motor domain containing protein
           OS=Brugia malayi GN=Bm1_26715 PE=3 SV=1
          Length = 756

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 581 HKAGLPLLCSLCAFCRDQECLIPMEEQHIRF 489
           HK  + ++C LC +  +  C+IP++++H+RF
Sbjct: 21  HKENVEVVCRLCPYKGNDPCVIPIDDEHVRF 51


>tr|Q0ZDR7|Q0ZDR7_9TELE Recombination activating protein 1
           (Fragment) OS=Pterygoplichthys multiradiatus GN=rag1
           PE=4 SV=1
          Length = 399

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +1

Query: 478 PKRAKRICCSSMGMRHSWSLQNAHKEHKSGNPALCVSWIRSARSGSIWIRSCVDCL*RLP 657
           PKR KR  CSS+G    W  Q A      G  A    W++ +   S+W+++   C     
Sbjct: 189 PKRTKRDSCSSIGGNRVWR-QTADSPAAVGLRA----WVKQSAQRSLWVKNITHCQRDHL 243

Query: 658 SCGLL 672
           SC LL
Sbjct: 244 SCKLL 248


>tr|B3MGM8|B3MGM8_DROAN GF11778 OS=Drosophila ananassae GN=GF11778
           PE=4 SV=1
          Length = 557

 Score = 35.4 bits (80), Expect = 3.3
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 89  LYDRAGQPI---EIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRL 145

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS+SK     E +  + E+C +L+
Sbjct: 146 IDSVSKQAIIYEGQDKNPEMCRVLL 170


>tr|B5E039|B5E039_DROPS GA24435 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA24435 PE=4 SV=1
          Length = 555

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 87  LYDRAGQPI---EIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRL 143

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS++K     E +  + E+C +L+
Sbjct: 144 IDSVTKQAIIYEGQDKNPEMCRVLL 168


>tr|B4QFY9|B4QFY9_DROSI GD25656 OS=Drosophila simulans GN=GD25656
           PE=4 SV=1
          Length = 633

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 90  LYDRAGQPI---EIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRL 146

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS++K     E +  + E+C +L+
Sbjct: 147 IDSVTKQAIIYEGQDKNPEMCRVLL 171


>tr|B4P7P4|B4P7P4_DROYA GE12286 OS=Drosophila yakuba GN=GE12286 PE=4
           SV=1
          Length = 659

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 192 LYDRAGQPI---EIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRL 248

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS++K     E +  + E+C +L+
Sbjct: 249 IDSVTKQAIIYEGQDKNPEMCRVLL 273


>tr|B4NND0|B4NND0_DROWI GK23295 OS=Drosophila willistoni GN=GK23295
           PE=4 SV=1
          Length = 555

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 87  LYDRAGQPI---EIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRL 143

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS++K     E +  + E+C +L+
Sbjct: 144 IDSVTKQAIIYEGQDKNPEMCRVLL 168


>tr|B4LPT7|B4LPT7_DROVI GJ21945 OS=Drosophila virilis GN=GJ21945
           PE=4 SV=1
          Length = 555

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 87  LYDRAGQPI---EIERTAFIGFIEKDSESDSTKTNNGIQYRLQLLYANGARQEQDIFVRL 143

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS++K     E +  + E+C +L+
Sbjct: 144 IDSVTKAAIIYEGQDKNPEMCRVLL 168


>tr|B4KQX3|B4KQX3_DROMO GI21022 OS=Drosophila mojavensis GN=GI21022
           PE=4 SV=1
          Length = 554

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +3

Query: 408 LLDQLGIPTSGEEVLNNMWCGTFSKESKADMLFFHGDEAFLVSAKRAQGAQEWQSCFVRV 587
           L D+ G P    E+    + G   K+S++D    +    + +    A GA++ Q  FVR+
Sbjct: 87  LYDRAGQPI---EIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYANGARQEQDIFVRL 143

Query: 588 LDSISK-----EWKHLDKELCGLLV 647
           +DS++K     E +  + E+C +L+
Sbjct: 144 IDSVTKAAIIYEGQDKNPEMCRVLL 168