DK960677
Clone id TST39A01NGRL0008_A24
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
ATAAGCCAGTAGACCCAATAGCTATACTTATCTTGTTGCAAGCAACTAATTAGATAGCCG
GGTCGAATCATGAGCGGACGGAGTAACTATACTGCTTTTCCATATGGCGCTGGCATTAAG
TCTAGGTGGCCAGATCACGGCCCCCCGCCGTATTACACCCCTCCAGAAGATCTTTTTTCT
TTTCCTCCTCCACACAGTACTGAGGCATCATGGGTGGCGGAAGCTACTGAGAATTTCGGC
CGGCCGGCCACGCAGCTCGCCAAGGCCGAGGTGAATTCCGTTTTCTGCAAAATAGTCGGA
ACAGAATCTTCCTCCGCGGTTCTGGAGGAGATTCCCGGTGTAGGGCTGCTGGTGGCGGCT
GTGTACTACAGCGCCGAACAGCAGCAAAGTAAACATGGTACGTCCTCGGCGGATCACAAC
TCCACATTTGCCACCAATGTGAGGGCTATCTTAGCTCTCCTTGGTGACGGGGTGGCCTTC
TGCTTAATGCAGTTGGGCAGTGCCCGAAAGGCGGCCATAAGCAAGCTCGGCCGCCAGCTT
GGCCTGCTACTGCAAATGGCCATCTTCAACTACTACAGCGATGCGCAGCGGGAGGTGCCC
GCCGATGACATCTGTGCCACTCGTCTTCTCGTGGACCTGGCTACGGTGCCAGCCGCCGCC
■■Homology search results ■■ -
sp_hit_id Q5ZMJ9
Definition sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus
Align length 57
Score (bit) 33.5
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960677|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A24, 5'
(660 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ... 33 1.0
sp|Q32KG4|RGAG1_MOUSE Retrotransposon gag domain-containing prot... 33 1.0
sp|A9WS93|GLPK_RENSM Glycerol kinase OS=Renibacterium salmoninar... 32 3.9
sp|Q8TF74|WIPF2_HUMAN WAS/WASL-interacting protein family member... 31 5.1
sp|Q1GTN0|ISPDF_SPHAL Bifunctional enzyme ispD/ispF OS=Sphingopy... 31 5.1
sp|P06599|EXTN_DAUCA Extensin OS=Daucus carota PE=2 SV=1 31 5.1
sp|Q5GH73|XKR6_HUMAN XK-related protein 6 OS=Homo sapiens GN=XKR... 31 6.6
sp|Q6PEV3|WIPF2_MOUSE WAS/WASL-interacting protein family member... 31 6.6
sp|Q6AGR0|GLPK_LEIXX Glycerol kinase OS=Leifsonia xyli subsp. xy... 30 8.7

>sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1
OS=Gallus gallus GN=SRRM1 PE=2 SV=1
Length = 888

Score = 33.5 bits (75), Expect = 1.0
Identities = 23/57 (40%), Positives = 26/57 (45%)
Frame = -3

Query: 382 AVRRCSTQPPPAALHRESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPPP 212
A RR S PPP R SP PRR+ +R SP P R + P R PPP
Sbjct: 549 ARRRRSPSPPPPPRRRRSPSLPRRRSPSP--PPRRRSPSPRRYSPPIQRRYSPSPPP 603


>sp|Q32KG4|RGAG1_MOUSE Retrotransposon gag domain-containing protein 1
OS=Mus musculus GN=Rgag1 PE=2 SV=1
Length = 1339

Score = 33.5 bits (75), Expect = 1.0
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +1

Query: 325 EEIPGVGLLVAAVYYSAEQQQSKHGTSSADHNSTFATNVRAILALLGDG--VAFCL-MQL 495
+E+P G+L A+ Y E+Q++ G+SS + ++ + + L D +AF + + L
Sbjct: 1115 KEVPSFGMLTPALCYLLEEQEAARGSSSVEEDAEEIDEEKQMKGFLDDSEKMAFLVSLHL 1174

Query: 496 GSARKAAISKL 528
G+A + +I ++
Sbjct: 1175 GAAERWSILQM 1185


>sp|A9WS93|GLPK_RENSM Glycerol kinase OS=Renibacterium salmoninarum
(strain ATCC 33209 / DSM 20767 / IFO 15589) GN=glpK PE=3
SV=1
Length = 504

Score = 31.6 bits (70), Expect = 3.9
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1

Query: 208 SWVAEATENFGRPATQLAKAEVNSVFCKIVGTESSSAVLEEIPGVGLL 351
SW E + FG PA+ L + +S ++ GT +S +L E+P G+L
Sbjct: 200 SWDQEILDAFGVPASMLPTIKSSS---EVYGTVHTSQLLREVPVAGIL 244


>sp|Q8TF74|WIPF2_HUMAN WAS/WASL-interacting protein family member 2
OS=Homo sapiens GN=WIPF2 PE=1 SV=1
Length = 440

Score = 31.2 bits (69), Expect = 5.1
Identities = 29/104 (27%), Positives = 33/104 (31%)
Frame = -3

Query: 514 PPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHR 335
PP P+ LS RPP P+ PP V R PPP +H
Sbjct: 298 PPTSASPSLLSNRPPP-------PARDPPSRGAAPPPPPPVIRNGARDAPPPPPPYRMHG 350

Query: 334 ESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPPPMMP 203
PP R P P + PAG PPP P
Sbjct: 351 SEPP-------------SRGKPPPPPSRTPAG------PPPPPP 375


>sp|Q1GTN0|ISPDF_SPHAL Bifunctional enzyme ispD/ispF OS=Sphingopyxis
alaskensis GN=ispDF PE=3 SV=1
Length = 392

Score = 31.2 bits (69), Expect = 5.1
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Frame = +3

Query: 345 AAGGGCVLQRRTAAK*TWYVLGGSQLHICHQCEGYLSSPW*RGGL---LLNAVGQCPKGG 515
A G G + R K W +GG ++ H EG+ + L +L A+G G
Sbjct: 235 AVGMGYDVHRLVEGKPLW--IGGIEIAHSHGLEGHSDADVGLHALTDAILGALGDGDIGD 292

Query: 516 HKQARPPAWPATANGHLQLL--QRCAAGGARR*HL 614
H P W A+ H +R AA G R HL
Sbjct: 293 HFPPSDPQWRGAASHHFLSFAGERVAANGGRIGHL 327


>sp|P06599|EXTN_DAUCA Extensin OS=Daucus carota PE=2 SV=1
Length = 306

Score = 31.2 bits (69), Expect = 5.1
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Frame = -3

Query: 514 PPFGHCPTA------LSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPP 353
PP H P S PP+H P H ++ PP VY + + PP
Sbjct: 147 PPPKHSPAPEHHYKYKSPPPPKHFPA---PEHHYKYKYKSPPPPTPVY-----KYKSPPP 198

Query: 352 PAALHRESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPPPMMPQY 197
P +++ P P + + K SP P + + + PPP P Y
Sbjct: 199 PTPVYKYKSPPPPKHSPAPVHHYKYKSPPPPTPVYKSPPPPEHSPPPPTPVY 250


>sp|Q5GH73|XKR6_HUMAN XK-related protein 6 OS=Homo sapiens GN=XKR6
PE=2 SV=1
Length = 641

Score = 30.8 bits (68), Expect = 6.6
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Frame = +3

Query: 318 GSGGDSRCRAAGGGCVLQRRTAAK*TWYVLGG----------SQLHICHQCEGYLSSPW* 467
GSGG+ GGGC GG S +HICH C
Sbjct: 25 GSGGEEDGEPGGGGC---------------GGGGDGSEPGESSSMHICHCCNTSSCYWGC 69

Query: 468 RGGLLLNAVGQCPK------GGHKQARPPAWP 545
R L + +G+ P+ GG + +PPA P
Sbjct: 70 RSACLRSLLGRKPRRSAAADGGDQPLQPPAAP 101


>sp|Q6PEV3|WIPF2_MOUSE WAS/WASL-interacting protein family member 2
OS=Mus musculus GN=Wipf2 PE=2 SV=1
Length = 440

Score = 30.8 bits (68), Expect = 6.6
Identities = 30/104 (28%), Positives = 34/104 (32%)
Frame = -3

Query: 514 PPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHR 335
PP P+ LS RPP E PS PP + R PPP +H
Sbjct: 298 PPTSATPSLLSNRPPPPAREP--PSR-----GAAPPPPPPMIRNGARDAPPPPPPYRMHG 350

Query: 334 ESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPPPMMP 203
PP R P P + PAG PPP P
Sbjct: 351 SEPP-------------SRGKPPPPPSRTPAG------PPPPPP 375


>sp|Q6AGR0|GLPK_LEIXX Glycerol kinase OS=Leifsonia xyli subsp. xyli
GN=glpK PE=3 SV=1
Length = 506

Score = 30.4 bits (67), Expect = 8.7
Identities = 25/112 (22%), Positives = 50/112 (44%)
Frame = +1

Query: 208 SWVAEATENFGRPATQLAKAEVNSVFCKIVGTESSSAVLEEIPGVGLLVAAVYYSAEQQQ 387
SW + + FG P + L + + +S ++ G SS++L E+P G+L +QQ
Sbjct: 200 SWRDDILDVFGVPKSMLPEIKSSS---EVYGAVESSSLLREVPVAGIL-------GDQQA 249

Query: 388 SKHGTSSADHNSTFATNVRAILALLGDGVAFCLMQLGSARKAAISKLGRQLG 543
+ G ++ D + T + G ++ ++ ++ LG +LG
Sbjct: 250 ATFGQAAFDPGESKNTYGTGNFLIFNTG-----EEIVHSKNGLLTTLGYKLG 296


tr_hit_id Q8S5M5
Definition tr|Q8S5M5|Q8S5M5_ORYSJ Putative PPR-repeat protein (Pentatricopeptide, putative, expressed) (Putative uncharacterized protein OSJNBa0083M08.2) OS=Oryza sativa subsp. japonica
Align length 88
Score (bit) 39.3
E-value 0.22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960677|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_A24, 5'
(660 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8S5M5|Q8S5M5_ORYSJ Putative PPR-repeat protein (Pentatricope... 39 0.22
tr|A3C429|A3C429_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.22
tr|Q2TY63|Q2TY63_ASPOR Predicted protein OS=Aspergillus oryzae G... 38 0.64
tr|Q5QLW4|Q5QLW4_ORYSJ Putative uncharacterized protein B1168H06... 32 1.8
tr|B6PNZ3|B6PNZ3_BRAFL Putative uncharacterized protein OS=Branc... 35 3.1
tr|B6LTC8|B6LTC8_BRAFL Putative uncharacterized protein OS=Branc... 35 3.1
tr|Q658F7|Q658F7_ORYSJ Putative uncharacterized protein P0015E04... 35 5.3
tr|Q8H5A6|Q8H5A6_ORYSJ Putative uncharacterized protein OJ1634_B... 34 7.0
tr|Q84T11|Q84T11_ORYSJ Putative uncharacterized protein OSJNBa00... 34 7.0
tr|Q10BX5|Q10BX5_ORYSJ Os03g0801900 protein OS=Oryza sativa subs... 34 7.0
tr|Q0CQ88|Q0CQ88_ASPTN Putative uncharacterized protein OS=Asper... 34 7.0
tr|B0W4G6|B0W4G6_CULQU Putative uncharacterized protein OS=Culex... 34 7.1
tr|Q6ZD75|Q6ZD75_ORYSJ Putative uncharacterized protein P0450B04... 34 9.1
tr|O00816|O00816_TOXGO Micronemal protein MIC2 OS=Toxoplasma gon... 34 9.1
tr|B6KIP6|B6KIP6_TOXGO Microneme protein 2 OS=Toxoplasma gondii ... 34 9.1
tr|Q607C1|Q607C1_METCA Putative uncharacterized protein OS=Methy... 34 9.2

>tr|Q8S5M5|Q8S5M5_ORYSJ Putative PPR-repeat protein
(Pentatricopeptide, putative, expressed) (Putative
uncharacterized protein OSJNBa0083M08.2) OS=Oryza sativa
subsp. japonica GN=OJ1003C07.14 PE=4 SV=1
Length = 913

Score = 39.3 bits (90), Expect = 0.22
Identities = 26/88 (29%), Positives = 35/88 (39%)
Frame = -3

Query: 466 HQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHRESPPEPRRKILFRLFC 287
HQ E WW P H+ FAA P LH +P P +L
Sbjct: 800 HQNEF-----WWSHRITASPMGGHI-FAAPSPSPDYSPETPLHIPTPVIPLEFLLIGTLA 853

Query: 286 RKRNSPRPWRAAWPAGRNSQ*LPPPMMP 203
+R +P + AAW +G +S P P+ P
Sbjct: 854 ARRGAPPFYMAAWGSGESSAPPPTPLFP 881


>tr|A3C429|A3C429_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_030051 PE=4 SV=1
Length = 832

Score = 39.3 bits (90), Expect = 0.22
Identities = 26/88 (29%), Positives = 35/88 (39%)
Frame = -3

Query: 466 HQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHRESPPEPRRKILFRLFC 287
HQ E WW P H+ FAA P LH +P P +L
Sbjct: 719 HQNEF-----WWSHRITASPMGGHI-FAAPSPSPDYSPETPLHIPTPVIPLEFLLIGTLA 772

Query: 286 RKRNSPRPWRAAWPAGRNSQ*LPPPMMP 203
+R +P + AAW +G +S P P+ P
Sbjct: 773 ARRGAPPFYMAAWGSGESSAPPPTPLFP 800


>tr|Q2TY63|Q2TY63_ASPOR Predicted protein OS=Aspergillus oryzae
GN=AO090103000377 PE=4 SV=1
Length = 298

Score = 37.7 bits (86), Expect = 0.64
Identities = 27/89 (30%), Positives = 45/89 (50%)
Frame = +1

Query: 190 PHSTEASWVAEATENFGRPATQLAKAEVNSVFCKIVGTESSSAVLEEIPGVGLLVAAVYY 369
P++T+ W +AT + +A + +NS + + SSSA+LEE + +A+ +
Sbjct: 170 PNATQVDWFLKATNYY-----YIAASRMNSAISEAYTSVSSSAILEE---SAIQIASRWL 221

Query: 370 SAEQQQSKHGTSSADHNSTFATNVRAILA 456
S++ QQS A STF+ ILA
Sbjct: 222 SSQPQQSSSAAEEA-AASTFSRKAENILA 249


>tr|Q5QLW4|Q5QLW4_ORYSJ Putative uncharacterized protein B1168H06.35
(Putative uncharacterized protein B1003B09.41) OS=Oryza
sativa subsp. japonica GN=B1168H06.35 PE=4 SV=1
Length = 138

Score = 32.3 bits (72), Expect(2) = 1.8
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -3

Query: 445 PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHRESPPEPRRK 308
PS W DPPR + CS +PPPA RE P RR+
Sbjct: 62 PSPPWSCCRLDPPRHHRP-----PPCSPRPPPARYGREGPGARRRR 102



Score = 23.1 bits (48), Expect(2) = 1.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2

Query: 548 SRPSWRPSLLMAAFRALPNCIKQKAT-PSP 462
SR RP +AA R P C++ A P P
Sbjct: 11 SRREGRPGAAVAAARPRPTCVRAAAARPRP 40


>tr|B6PNZ3|B6PNZ3_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_132304 PE=4 SV=1
Length = 1706

Score = 35.4 bits (80), Expect = 3.1
Identities = 33/100 (33%), Positives = 39/100 (39%)
Frame = -3

Query: 514 PPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHR 335
PP H P+ RR P R S + S PP+ RR S P P+
Sbjct: 505 PPRRHSPSPQRRRSPSPPPRRRQQSPPPKRRSPSPPQKRRSVSPPQRRRSP-PQPSRRRS 563

Query: 334 ESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPP 215
SPP RRK L + R SP P A P R + PP
Sbjct: 564 PSPPVQRRKSLSPPQWKGRGSPPPRGRASPPPRLRESPPP 603


>tr|B6LTC8|B6LTC8_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_120702 PE=4 SV=1
Length = 1736

Score = 35.4 bits (80), Expect = 3.1
Identities = 33/100 (33%), Positives = 39/100 (39%)
Frame = -3

Query: 514 PPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHR 335
PP H P+ RR P R S + S PP+ RR S P P+
Sbjct: 505 PPRRHSPSPQRRRSPSPPPRRRQQSPPPKRRSPSPPQKRRSVSPPQRRRSP-PQPSRRRS 563

Query: 334 ESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPP 215
SPP RRK L + R SP P A P R + PP
Sbjct: 564 PSPPVQRRKSLSPPQWKGRGSPPPRGRASPPPRLRESPPP 603


>tr|Q658F7|Q658F7_ORYSJ Putative uncharacterized protein P0015E04.10
OS=Oryza sativa subsp. japonica GN=P0015E04.10 PE=4 SV=1
Length = 217

Score = 34.7 bits (78), Expect = 5.3
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +3

Query: 495 GQCPKGGHKQARPPAWPATANGHLQLLQRCAAGGARR 605
G CP GG PPA P A G Q+L+ CA G RR
Sbjct: 136 GGCPHGG--APAPPARPRPAGGRRQVLRSCAPMGCRR 170


>tr|Q8H5A6|Q8H5A6_ORYSJ Putative uncharacterized protein
OJ1634_B10.109 OS=Oryza sativa subsp. japonica
GN=OJ1634_B10.109 PE=4 SV=1
Length = 212

Score = 34.3 bits (77), Expect = 7.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3

Query: 382 AVRRCSTQPPPAALHRESPPEPRRKILFRLFCR 284
A RR S PP A H SPPE +R + FC+
Sbjct: 165 ACRRRSLSPPAARFHHPSPPEGKRGVELHRFCK 197


>tr|Q84T11|Q84T11_ORYSJ Putative uncharacterized protein
OSJNBa0087C10.19 OS=Oryza sativa subsp. japonica
GN=OSJNBa0087C10.19 PE=4 SV=1
Length = 388

Score = 34.3 bits (77), Expect = 7.0
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3

Query: 520 LWPPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAAL 341
L P PT+ + P H EL+ P PP +H + + PPP L
Sbjct: 153 LTPGHDRAPTSAAPPSPAHAPELKKPP--------PPPEAHH---RPTKSYTGHPPPPPL 201

Query: 340 HRESPPEPRR 311
+++PP+P R
Sbjct: 202 EKDAPPQPPR 211


>tr|Q10BX5|Q10BX5_ORYSJ Os03g0801900 protein OS=Oryza sativa subsp.
japonica GN=Os03g0801900 PE=2 SV=1
Length = 357

Score = 34.3 bits (77), Expect = 7.0
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = -3

Query: 520 LWPPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAAL 341
L P PT+ + P H EL+ P PP +H + + PPP L
Sbjct: 153 LTPGHDRAPTSAAPPSPAHAPELKKPP--------PPPEAHH---RPTKSYTGHPPPPPL 201

Query: 340 HRESPPEPRR 311
+++PP+P R
Sbjct: 202 EKDAPPQPPR 211