DK960677 |
Clone id |
TST39A01NGRL0008_A24 |
Library |
TST39 |
Length |
660 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_A24. 5' end sequence. |
Accession |
DK960677 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3007Contig1 |
Sequence |
ATAAGCCAGTAGACCCAATAGCTATACTTATCTTGTTGCAAGCAACTAATTAGATAGCCG GGTCGAATCATGAGCGGACGGAGTAACTATACTGCTTTTCCATATGGCGCTGGCATTAAG TCTAGGTGGCCAGATCACGGCCCCCCGCCGTATTACACCCCTCCAGAAGATCTTTTTTCT TTTCCTCCTCCACACAGTACTGAGGCATCATGGGTGGCGGAAGCTACTGAGAATTTCGGC CGGCCGGCCACGCAGCTCGCCAAGGCCGAGGTGAATTCCGTTTTCTGCAAAATAGTCGGA ACAGAATCTTCCTCCGCGGTTCTGGAGGAGATTCCCGGTGTAGGGCTGCTGGTGGCGGCT GTGTACTACAGCGCCGAACAGCAGCAAAGTAAACATGGTACGTCCTCGGCGGATCACAAC TCCACATTTGCCACCAATGTGAGGGCTATCTTAGCTCTCCTTGGTGACGGGGTGGCCTTC TGCTTAATGCAGTTGGGCAGTGCCCGAAAGGCGGCCATAAGCAAGCTCGGCCGCCAGCTT GGCCTGCTACTGCAAATGGCCATCTTCAACTACTACAGCGATGCGCAGCGGGAGGTGCCC GCCGATGACATCTGTGCCACTCGTCTTCTCGTGGACCTGGCTACGGTGCCAGCCGCCGCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5ZMJ9 |
Definition |
sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1 OS=Gallus gallus |
Align length |
57 |
Score (bit) |
33.5 |
E-value |
1.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8S5M5 |
Definition |
tr|Q8S5M5|Q8S5M5_ORYSJ Putative PPR-repeat protein (Pentatricopeptide, putative, expressed) (Putative uncharacterized protein OSJNBa0083M08.2) OS=Oryza sativa subsp. japonica |
Align length |
88 |
Score (bit) |
39.3 |
E-value |
0.22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960677|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_A24, 5' (660 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q8S5M5|Q8S5M5_ORYSJ Putative PPR-repeat protein (Pentatricope... 39 0.22 tr|A3C429|A3C429_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.22 tr|Q2TY63|Q2TY63_ASPOR Predicted protein OS=Aspergillus oryzae G... 38 0.64 tr|Q5QLW4|Q5QLW4_ORYSJ Putative uncharacterized protein B1168H06... 32 1.8 tr|B6PNZ3|B6PNZ3_BRAFL Putative uncharacterized protein OS=Branc... 35 3.1 tr|B6LTC8|B6LTC8_BRAFL Putative uncharacterized protein OS=Branc... 35 3.1 tr|Q658F7|Q658F7_ORYSJ Putative uncharacterized protein P0015E04... 35 5.3 tr|Q8H5A6|Q8H5A6_ORYSJ Putative uncharacterized protein OJ1634_B... 34 7.0 tr|Q84T11|Q84T11_ORYSJ Putative uncharacterized protein OSJNBa00... 34 7.0 tr|Q10BX5|Q10BX5_ORYSJ Os03g0801900 protein OS=Oryza sativa subs... 34 7.0 tr|Q0CQ88|Q0CQ88_ASPTN Putative uncharacterized protein OS=Asper... 34 7.0 tr|B0W4G6|B0W4G6_CULQU Putative uncharacterized protein OS=Culex... 34 7.1 tr|Q6ZD75|Q6ZD75_ORYSJ Putative uncharacterized protein P0450B04... 34 9.1 tr|O00816|O00816_TOXGO Micronemal protein MIC2 OS=Toxoplasma gon... 34 9.1 tr|B6KIP6|B6KIP6_TOXGO Microneme protein 2 OS=Toxoplasma gondii ... 34 9.1 tr|Q607C1|Q607C1_METCA Putative uncharacterized protein OS=Methy... 34 9.2
>tr|Q8S5M5|Q8S5M5_ORYSJ Putative PPR-repeat protein (Pentatricopeptide, putative, expressed) (Putative uncharacterized protein OSJNBa0083M08.2) OS=Oryza sativa subsp. japonica GN=OJ1003C07.14 PE=4 SV=1 Length = 913
Score = 39.3 bits (90), Expect = 0.22 Identities = 26/88 (29%), Positives = 35/88 (39%) Frame = -3
Query: 466 HQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHRESPPEPRRKILFRLFC 287 HQ E WW P H+ FAA P LH +P P +L Sbjct: 800 HQNEF-----WWSHRITASPMGGHI-FAAPSPSPDYSPETPLHIPTPVIPLEFLLIGTLA 853
Query: 286 RKRNSPRPWRAAWPAGRNSQ*LPPPMMP 203 +R +P + AAW +G +S P P+ P Sbjct: 854 ARRGAPPFYMAAWGSGESSAPPPTPLFP 881
>tr|A3C429|A3C429_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_030051 PE=4 SV=1 Length = 832
Score = 39.3 bits (90), Expect = 0.22 Identities = 26/88 (29%), Positives = 35/88 (39%) Frame = -3
Query: 466 HQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHRESPPEPRRKILFRLFC 287 HQ E WW P H+ FAA P LH +P P +L Sbjct: 719 HQNEF-----WWSHRITASPMGGHI-FAAPSPSPDYSPETPLHIPTPVIPLEFLLIGTLA 772
Query: 286 RKRNSPRPWRAAWPAGRNSQ*LPPPMMP 203 +R +P + AAW +G +S P P+ P Sbjct: 773 ARRGAPPFYMAAWGSGESSAPPPTPLFP 800
>tr|Q2TY63|Q2TY63_ASPOR Predicted protein OS=Aspergillus oryzae GN=AO090103000377 PE=4 SV=1 Length = 298
Score = 37.7 bits (86), Expect = 0.64 Identities = 27/89 (30%), Positives = 45/89 (50%) Frame = +1
Query: 190 PHSTEASWVAEATENFGRPATQLAKAEVNSVFCKIVGTESSSAVLEEIPGVGLLVAAVYY 369 P++T+ W +AT + +A + +NS + + SSSA+LEE + +A+ + Sbjct: 170 PNATQVDWFLKATNYY-----YIAASRMNSAISEAYTSVSSSAILEE---SAIQIASRWL 221
Query: 370 SAEQQQSKHGTSSADHNSTFATNVRAILA 456 S++ QQS A STF+ ILA Sbjct: 222 SSQPQQSSSAAEEA-AASTFSRKAENILA 249
>tr|Q5QLW4|Q5QLW4_ORYSJ Putative uncharacterized protein B1168H06.35 (Putative uncharacterized protein B1003B09.41) OS=Oryza sativa subsp. japonica GN=B1168H06.35 PE=4 SV=1 Length = 138
Score = 32.3 bits (72), Expect(2) = 1.8 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = -3
Query: 445 PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHRESPPEPRRK 308 PS W DPPR + CS +PPPA RE P RR+ Sbjct: 62 PSPPWSCCRLDPPRHHRP-----PPCSPRPPPARYGREGPGARRRR 102
Score = 23.1 bits (48), Expect(2) = 1.8 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = -2
Query: 548 SRPSWRPSLLMAAFRALPNCIKQKAT-PSP 462 SR RP +AA R P C++ A P P Sbjct: 11 SRREGRPGAAVAAARPRPTCVRAAAARPRP 40
>tr|B6PNZ3|B6PNZ3_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_132304 PE=4 SV=1 Length = 1706
Score = 35.4 bits (80), Expect = 3.1 Identities = 33/100 (33%), Positives = 39/100 (39%) Frame = -3
Query: 514 PPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHR 335 PP H P+ RR P R S + S PP+ RR S P P+ Sbjct: 505 PPRRHSPSPQRRRSPSPPPRRRQQSPPPKRRSPSPPQKRRSVSPPQRRRSP-PQPSRRRS 563
Query: 334 ESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPP 215 SPP RRK L + R SP P A P R + PP Sbjct: 564 PSPPVQRRKSLSPPQWKGRGSPPPRGRASPPPRLRESPPP 603
>tr|B6LTC8|B6LTC8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_120702 PE=4 SV=1 Length = 1736
Score = 35.4 bits (80), Expect = 3.1 Identities = 33/100 (33%), Positives = 39/100 (39%) Frame = -3
Query: 514 PPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAALHR 335 PP H P+ RR P R S + S PP+ RR S P P+ Sbjct: 505 PPRRHSPSPQRRRSPSPPPRRRQQSPPPKRRSPSPPQKRRSVSPPQRRRSP-PQPSRRRS 563
Query: 334 ESPPEPRRKILFRLFCRKRNSPRPWRAAWPAGRNSQ*LPP 215 SPP RRK L + R SP P A P R + PP Sbjct: 564 PSPPVQRRKSLSPPQWKGRGSPPPRGRASPPPRLRESPPP 603
>tr|Q658F7|Q658F7_ORYSJ Putative uncharacterized protein P0015E04.10 OS=Oryza sativa subsp. japonica GN=P0015E04.10 PE=4 SV=1 Length = 217
Score = 34.7 bits (78), Expect = 5.3 Identities = 18/37 (48%), Positives = 20/37 (54%) Frame = +3
Query: 495 GQCPKGGHKQARPPAWPATANGHLQLLQRCAAGGARR 605 G CP GG PPA P A G Q+L+ CA G RR Sbjct: 136 GGCPHGG--APAPPARPRPAGGRRQVLRSCAPMGCRR 170
>tr|Q8H5A6|Q8H5A6_ORYSJ Putative uncharacterized protein OJ1634_B10.109 OS=Oryza sativa subsp. japonica GN=OJ1634_B10.109 PE=4 SV=1 Length = 212
Score = 34.3 bits (77), Expect = 7.0 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -3
Query: 382 AVRRCSTQPPPAALHRESPPEPRRKILFRLFCR 284 A RR S PP A H SPPE +R + FC+ Sbjct: 165 ACRRRSLSPPAARFHHPSPPEGKRGVELHRFCK 197
>tr|Q84T11|Q84T11_ORYSJ Putative uncharacterized protein OSJNBa0087C10.19 OS=Oryza sativa subsp. japonica GN=OSJNBa0087C10.19 PE=4 SV=1 Length = 388
Score = 34.3 bits (77), Expect = 7.0 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = -3
Query: 520 LWPPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAAL 341 L P PT+ + P H EL+ P PP +H + + PPP L Sbjct: 153 LTPGHDRAPTSAAPPSPAHAPELKKPP--------PPPEAHH---RPTKSYTGHPPPPPL 201
Query: 340 HRESPPEPRR 311 +++PP+P R Sbjct: 202 EKDAPPQPPR 211
>tr|Q10BX5|Q10BX5_ORYSJ Os03g0801900 protein OS=Oryza sativa subsp. japonica GN=Os03g0801900 PE=2 SV=1 Length = 357
Score = 34.3 bits (77), Expect = 7.0 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = -3
Query: 520 LWPPFGHCPTALSRRPPRHQGELR*PSHWWQMWSCDPPRTYHVYFAAVRRCSTQPPPAAL 341 L P PT+ + P H EL+ P PP +H + + PPP L Sbjct: 153 LTPGHDRAPTSAAPPSPAHAPELKKPP--------PPPEAHH---RPTKSYTGHPPPPPL 201
Query: 340 HRESPPEPRR 311 +++PP+P R Sbjct: 202 EKDAPPQPPR 211
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