DK960682
Clone id TST39A01NGRL0008_B05
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_B05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GAAGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTGTTTTTAACGTCGTCGAAACT
ATCCCAAGAGACGACGACAGTTGAACTCAAGAGCTGTTAGTGAAGAGGGAGAGAGCAACC
TCACGGCTGCGCCCCACCCTCAGGCCTGCAGGTAGACTTGCCTCTACCCCCCTTCTGTGT
CCCAGGCATTCTGGGTTGTGACAAGTGATAACAACACTGTATAAAAGGAGGCGAGCCTGG
AAACAGAAGAAGAGAACTTTCAGAACAATCCAAGAGAAAACGTACCGGGAAAATGTATTC
CAACGCCAATTTGCGACTGGCAACACTACAAAACCAGCTCTCGTCTTCCTCGCCGCTCTC
TGATGGTGCCAAATTCTTGCAGGCAGCAGATCGGCTTGGATTCAAAGTAGAGCCAAACGT
GCGGCGGGCTATCTTTGAGTCCTCTCCTGTGGTTGCATTGGAGTCAACAATTATTACCCA
TGGGATGCCATATCCTCAAAATGTCCAGACTGCAAAAGAAGTAGAGGGGATTATTGTCAG
ACATGGGGCTGTTCCAGCAACTATTGCGATTCTGAAAGGGATTCCATGCATAGGTTTATC
TGTGGATGAACTAGAAGAGTTGGGACGAAATGGCTCAAACTTTACGAAAACAGCTCGCAG
G
■■Homology search results ■■ -
sp_hit_id P33025
Definition sp|P33025|YEIN_ECOLI UPF0724 protein yeiN OS=Escherichia coli (strain K12)
Align length 86
Score (bit) 102.0
E-value 2.0e-21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960682|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B05, 5'
(661 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P33025|YEIN_ECOLI UPF0724 protein yeiN OS=Escherichia coli (s... 102 2e-21
sp|Q9USY1|YOW5_SCHPO UPF0724 protein C1861.05 OS=Schizosaccharom... 81 4e-15
sp|P80675|CU04_BLACR Cuticle protein 4 OS=Blaberus craniifer PE=... 32 2.3
sp|O24594|HMDH_MAIZE 3-hydroxy-3-methylglutaryl-coenzyme A reduc... 31 5.1
sp|Q1AVH9|ATPB_RUBXD ATP synthase subunit beta OS=Rubrobacter xy... 31 5.1
sp|Q4VX76|SYTL3_HUMAN Synaptotagmin-like protein 3 OS=Homo sapie... 30 8.6
sp|A0RQA9|UPPP_CAMFF Undecaprenyl-diphosphatase OS=Campylobacter... 30 8.7
sp|Q6MMA3|SYM_BDEBA Methionyl-tRNA synthetase OS=Bdellovibrio ba... 30 8.7

>sp|P33025|YEIN_ECOLI UPF0724 protein yeiN OS=Escherichia coli
(strain K12) GN=yeiN PE=3 SV=1
Length = 312

Score = 102 bits (253), Expect = 2e-21
Identities = 51/86 (59%), Positives = 64/86 (74%)
Frame = +2

Query: 404 KVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGI 583
++ P V+ A+ PVVALESTII+HGMP+PQN QTA EVE I + GAVPATIAI+ G+
Sbjct: 12 QISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIAIIGGV 71

Query: 584 PCIGLSVDELEELGRNGSNFTKTARR 661
+GLS +E+E LGR G N TK +RR
Sbjct: 72 MKVGLSKEEIELLGREGHNVTKVSRR 97


>sp|Q9USY1|YOW5_SCHPO UPF0724 protein C1861.05
OS=Schizosaccharomyces pombe GN=SPBC1861.05 PE=2 SV=1
Length = 747

Score = 81.3 bits (199), Expect = 4e-15
Identities = 44/81 (54%), Positives = 54/81 (66%)
Frame = +2

Query: 419 VRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGIPCIGL 598
V A+ + PVVALESTIITHGMPYPQN + A +VE + GAVPATIA+L G IGL
Sbjct: 47 VTEALKNNVPVVALESTIITHGMPYPQNEELAIQVESKVRSMGAVPATIALLNGQCTIGL 106

Query: 599 SVDELEELGRNGSNFTKTARR 661
+L EL ++G K +RR
Sbjct: 107 EQFQLSELAKSGETAYKVSRR 127


>sp|P80675|CU04_BLACR Cuticle protein 4 OS=Blaberus craniifer PE=1
SV=1
Length = 127

Score = 32.3 bits (72), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2

Query: 461 ESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAI 571
E +ITHG+P P + V ++V G +PA + +
Sbjct: 43 EHEVITHGLPVPYSSVVQPIVSSVVVNPGVIPAVVPV 79


>sp|O24594|HMDH_MAIZE 3-hydroxy-3-methylglutaryl-coenzyme A
reductase OS=Zea mays GN=HMGR PE=3 SV=1
Length = 579

Score = 31.2 bits (69), Expect = 5.1
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 10/124 (8%)
Frame = -2

Query: 594 PMHGIPFRIAIVAGTAPCLTIIPSTSFAVWTF*GYGIPWVIIVDSNATTGEDSKIARRTF 415
P+H + G A L I + ++ +GI +V + S+ ED + +
Sbjct: 69 PLHAV--------GLAEMLAIFGLVASLIYLLSFFGIAFVQSIVSSGDDDEDFLVGSGSS 120

Query: 414 GSTLNPSRS-----AACKNL-----APSESGEEDESWFCSVASRKLALEYIFPVRFLLDC 265
GS PSR A C+ L AP + E+DE SV + K+ Y R L DC
Sbjct: 121 GSAAAPSRQHAQAPAPCELLGSPAAAPEKMPEDDEEIVASVVAGKVP-SYALEAR-LGDC 178

Query: 264 SESS 253
++
Sbjct: 179 RRAA 182


>sp|Q1AVH9|ATPB_RUBXD ATP synthase subunit beta OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=atpD PE=3
SV=2
Length = 503

Score = 31.2 bits (69), Expect = 5.1
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2

Query: 425 RAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGIPCIGLSV 604
+AIF + +A STI+ + ++ + A+EV+GI+ R+ + IAI L +
Sbjct: 348 QAIFPAVDPLASSSTILDPDVVGQEHYEVAQEVKGILQRYKELQDIIAI--------LGI 399

Query: 605 DELEE 619
DEL E
Sbjct: 400 DELSE 404


>sp|Q4VX76|SYTL3_HUMAN Synaptotagmin-like protein 3 OS=Homo sapiens
GN=SYTL3 PE=2 SV=2
Length = 610

Score = 30.4 bits (67), Expect = 8.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3

Query: 374 IWHHQRAARKTRAGFVVLPVANWRWNTFSRYVFSWIVLK 258
+WH AR+ G V++P+A W + + F W L+
Sbjct: 396 VWHLGTLARRVFLGEVIIPLATWDFEDSTTQSFRWHPLR 434


>sp|A0RQA9|UPPP_CAMFF Undecaprenyl-diphosphatase OS=Campylobacter
fetus subsp. fetus (strain 82-40) GN=uppP PE=3 SV=1
Length = 258

Score = 30.4 bits (67), Expect = 8.7
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2

Query: 651 VFVKFEPFRPNSSSSSTDKPMHGIPFRIAIVAGTAPCLTIIPSTS 517
VF+ E + + K +H + F+ A + G + C +IP TS
Sbjct: 112 VFIVVELWHKKINYEGDTKTLHEVSFKQAFIIGLSQCFAMIPGTS 156


>sp|Q6MMA3|SYM_BDEBA Methionyl-tRNA synthetase OS=Bdellovibrio
bacteriovorus GN=metG PE=3 SV=1
Length = 687

Score = 30.4 bits (67), Expect = 8.7
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = +1

Query: 472 YYPWDAISSKCPDC--KRSRGDYCQTWGCSSNYCDSERDSMHRFICG 606
+ P + CP C K GD C C+S Y S+ +H +CG
Sbjct: 135 FLPDRFVKGTCPKCGAKEQYGDSCDV--CASTYSPSDMKDVHCSLCG 179


tr_hit_id Q9LPS4
Definition tr|Q9LPS4|Q9LPS4_ARATH F11F12.14 protein OS=Arabidopsis thaliana
Align length 99
Score (bit) 110.0
E-value 8.0e-23
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960682|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B05, 5'
(661 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9LPS4|Q9LPS4_ARATH F11F12.14 protein OS=Arabidopsis thaliana... 110 8e-23
tr|Q84K35|Q84K35_ARATH Putative uncharacterized protein At1g5051... 110 1e-22
tr|Q9C6Q2|Q9C6Q2_ARATH Putative uncharacterized protein F17J6.5 ... 109 1e-22
tr|B7NQ70|B7NQ70_ECOLX Putative uncharacterized protein yeiN OS=... 107 9e-22
tr|A7PFX6|A7PFX6_VITVI Chromosome chr6 scaffold_15, whole genome... 104 6e-21
tr|A9TWE2|A9TWE2_PHYPA Predicted protein OS=Physcomitrella paten... 103 7e-21
tr|A8AE58|A8AE58_CITK8 Putative uncharacterized protein OS=Citro... 103 9e-21
tr|Q6ZK88|Q6ZK88_ORYSJ Erwinia chrysanthemi IndA protein homolog... 103 9e-21
tr|Q6ZK87|Q6ZK87_ORYSJ cDNA clone:J013116B08, full insert sequen... 103 9e-21
tr|Q0J4M3|Q0J4M3_ORYSJ Os08g0504400 protein OS=Oryza sativa subs... 103 9e-21
tr|B8BC97|B8BC97_ORYSI Putative uncharacterized protein OS=Oryza... 103 9e-21
tr|A3BUM3|A3BUM3_ORYSJ Putative uncharacterized protein OS=Oryza... 103 9e-21
tr|B1IYA5|B1IYA5_ECOLC Indigoidine synthase A family protein OS=... 102 2e-20
tr|A8A227|A8A227_ECOHS Indigoidine synthase A like protein OS=Es... 102 2e-20
tr|B3X9B3|B3X9B3_ECOLX Indigoidine synthase A like protein OS=Es... 102 2e-20
tr|B2N6R4|B2N6R4_ECOLX Indigoidine synthase A like protein OS=Es... 102 2e-20
tr|Q8XE93|Q8XE93_ECO57 Putative uncharacterized protein yeiN (Pu... 102 3e-20
tr|B6I8L6|B6I8L6_ECOSE Putative uncharacterized protein OS=Esche... 102 3e-20
tr|B5YWV6|B5YWV6_ECO5E Indigoidine synthase A like protein OS=Es... 102 3e-20
tr|B2TVS7|B2TVS7_SHIB3 Indigoidine synthase A like protein OS=Sh... 102 3e-20
tr|B1X863|B1X863_ECODH Conserved protein OS=Escherichia coli (st... 102 3e-20
tr|B1LKR2|B1LKR2_ECOSM Indigoidine synthase A like protein OS=Es... 102 3e-20
tr|A7ZNY8|A7ZNY8_ECO24 Indigoidine synthase A like protein OS=Es... 102 3e-20
tr|B7NMX9|B7NMX9_ECOLX Putative uncharacterized protein yeiN OS=... 102 3e-20
tr|B7LAI8|B7LAI8_ECOLX Putative uncharacterized protein yeiN OS=... 102 3e-20
tr|B6ZYS0|B6ZYS0_ECO57 Indigoidine synthase A like protein OS=Es... 102 3e-20
tr|B3WJV9|B3WJV9_ECOLX Indigoidine synthase A like protein OS=Es... 102 3e-20
tr|B3I155|B3I155_ECOLX Indigoidine synthase A like protein OS=Es... 102 3e-20
tr|B3C4R7|B3C4R7_ECO57 Indigoidine synthase A like protein OS=Es... 102 3e-20
tr|B3BLQ5|B3BLQ5_ECO57 Indigoidine synthase A like protein OS=Es... 102 3e-20

>tr|Q9LPS4|Q9LPS4_ARATH F11F12.14 protein OS=Arabidopsis thaliana
GN=F11F12.14 PE=4 SV=1
Length = 324

Score = 110 bits (275), Expect = 8e-23
Identities = 58/99 (58%), Positives = 69/99 (69%)
Frame = +2

Query: 365 GAKFLQAADRLGFKVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRH 544
G FL+ L K+ P V A+ VVALESTII+HGMPYPQN+QTAKEVE I+ +
Sbjct: 13 GPSFLKQLRSL-VKISPQVSEALSNGRAVVALESTIISHGMPYPQNLQTAKEVESIVREN 71

Query: 545 GAVPATIAILKGIPCIGLSVDELEELGRNGSNFTKTARR 661
GA+PATIAIL G+PCIGLS +ELE L G + KTA R
Sbjct: 72 GAIPATIAILNGVPCIGLSEEELERLASLGKSVQKTAGR 110


>tr|Q84K35|Q84K35_ARATH Putative uncharacterized protein At1g50510
OS=Arabidopsis thaliana GN=At1g50510 PE=2 SV=1
Length = 330

Score = 110 bits (274), Expect = 1e-22
Identities = 63/123 (51%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Frame = +2

Query: 299 SNANLRLATLQNQXXXXXXXXDGAKFLQAADRLG--FKVEPNVRRAIFESSPVVALESTI 472
S A R++ LQN L+A ++L K+ P V A+ VVALESTI
Sbjct: 4 SLAQSRISNLQNHLSP----------LEANNKLRSLVKISPQVSEALSNGRAVVALESTI 53

Query: 473 ITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGIPCIGLSVDELEELGRNGSNFTKT 652
I+HGMPYPQN+QTAKEVE I+ +GA+PATIAIL G+PCIGLS +ELE L G + KT
Sbjct: 54 ISHGMPYPQNLQTAKEVESIVRENGAIPATIAILNGVPCIGLSEEELERLASLGKSVQKT 113

Query: 653 ARR 661
A R
Sbjct: 114 AGR 116


>tr|Q9C6Q2|Q9C6Q2_ARATH Putative uncharacterized protein F17J6.5
OS=Arabidopsis thaliana GN=F17J6.5 PE=4 SV=1
Length = 362

Score = 109 bits (273), Expect = 1e-22
Identities = 54/86 (62%), Positives = 64/86 (74%)
Frame = +2

Query: 404 KVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGI 583
K+ P V A+ VVALESTII+HGMPYPQN+QTAKEVE I+ +GA+PATIAIL G+
Sbjct: 32 KISPQVSEALSNGRAVVALESTIISHGMPYPQNLQTAKEVESIVRENGAIPATIAILNGV 91

Query: 584 PCIGLSVDELEELGRNGSNFTKTARR 661
PCIGLS +ELE L G + KTA R
Sbjct: 92 PCIGLSEEELERLASLGKSVQKTAGR 117


>tr|B7NQ70|B7NQ70_ECOLX Putative uncharacterized protein yeiN
OS=Escherichia coli GN=yeiN PE=4 SV=1
Length = 311

Score = 107 bits (266), Expect = 9e-22
Identities = 53/86 (61%), Positives = 65/86 (75%)
Frame = +2

Query: 404 KVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGI 583
++ P V+ AI PVVALESTII+HGMP+PQN QTA EVE I +HGAVPATIA++ G+
Sbjct: 12 QISPEVQDAINSKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKHGAVPATIAVIGGV 71

Query: 584 PCIGLSVDELEELGRNGSNFTKTARR 661
+GLS DE+E LGR G N TK +RR
Sbjct: 72 MKVGLSKDEIELLGREGHNVTKVSRR 97


>tr|A7PFX6|A7PFX6_VITVI Chromosome chr6 scaffold_15, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00017290001
PE=4 SV=1
Length = 329

Score = 104 bits (259), Expect = 6e-21
Identities = 51/85 (60%), Positives = 64/85 (75%)
Frame = +2

Query: 407 VEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGIP 586
+ P V A+ VVALESTII+HGMPYP+N++TAKEVE I+ +GAVPAT+AIL GIP
Sbjct: 20 ISPEVSNALSCGRAVVALESTIISHGMPYPRNLETAKEVEAIVRTNGAVPATVAILDGIP 79

Query: 587 CIGLSVDELEELGRNGSNFTKTARR 661
CIGLS+++LE L G+ K ARR
Sbjct: 80 CIGLSIEQLERLASLGTKAQKAARR 104


>tr|A9TWE2|A9TWE2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_108917 PE=4 SV=1
Length = 314

Score = 103 bits (258), Expect = 7e-21
Identities = 53/88 (60%), Positives = 64/88 (72%)
Frame = +2

Query: 398 GFKVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILK 577
G ++ +VR A+ PVVALESTII+HGMPYPQN +TAKEVE I+ GAVPATIAIL
Sbjct: 10 GIQIRADVRDALERGFPVVALESTIISHGMPYPQNFETAKEVESIVRDSGAVPATIAILD 69

Query: 578 GIPCIGLSVDELEELGRNGSNFTKTARR 661
G PCIGL EL++L + G KT+RR
Sbjct: 70 GAPCIGLEEAELKKLAQLGKKAIKTSRR 97


>tr|A8AE58|A8AE58_CITK8 Putative uncharacterized protein
OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=CKO_00617 PE=4 SV=1
Length = 311

Score = 103 bits (257), Expect = 9e-21
Identities = 50/86 (58%), Positives = 65/86 (75%)
Frame = +2

Query: 404 KVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAILKGI 583
++ P V+ A+ P+VALESTII+HGMP+PQN QTA EVE I +HGAVPATIAI+ G+
Sbjct: 12 QISPEVQDALKSKKPIVALESTIISHGMPFPQNAQTAIEVEETIRKHGAVPATIAIIGGV 71

Query: 584 PCIGLSVDELEELGRNGSNFTKTARR 661
+GL+ +E+E LGR G N TK +RR
Sbjct: 72 MKVGLNKEEIELLGREGHNVTKVSRR 97


>tr|Q6ZK88|Q6ZK88_ORYSJ Erwinia chrysanthemi IndA protein
homolog-like OS=Oryza sativa subsp. japonica
GN=OJ1134_H03.5-1 PE=4 SV=1
Length = 327

Score = 103 bits (257), Expect = 9e-21
Identities = 51/89 (57%), Positives = 64/89 (71%)
Frame = +2

Query: 395 LGFKVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAIL 574
+G V P V A+ VVALESTII HGMPYP+N+QTA EVE ++ +GAVPATIAIL
Sbjct: 13 MGVAVSPEVEAALARGGAVVALESTIICHGMPYPKNLQTAMEVEAVVRENGAVPATIAIL 72

Query: 575 KGIPCIGLSVDELEELGRNGSNFTKTARR 661
G+P +GLS ++L+ L +G F KTARR
Sbjct: 73 NGVPHVGLSGEQLKSLAVSGRQFQKTARR 101


>tr|Q6ZK87|Q6ZK87_ORYSJ cDNA clone:J013116B08, full insert sequence
OS=Oryza sativa subsp. japonica GN=OJ1134_H03.5-2 PE=2
SV=1
Length = 361

Score = 103 bits (257), Expect = 9e-21
Identities = 51/89 (57%), Positives = 64/89 (71%)
Frame = +2

Query: 395 LGFKVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAIL 574
+G V P V A+ VVALESTII HGMPYP+N+QTA EVE ++ +GAVPATIAIL
Sbjct: 13 MGVAVSPEVEAALARGGAVVALESTIICHGMPYPKNLQTAMEVEAVVRENGAVPATIAIL 72

Query: 575 KGIPCIGLSVDELEELGRNGSNFTKTARR 661
G+P +GLS ++L+ L +G F KTARR
Sbjct: 73 NGVPHVGLSGEQLKSLAVSGRQFQKTARR 101


>tr|Q0J4M3|Q0J4M3_ORYSJ Os08g0504400 protein OS=Oryza sativa subsp.
japonica GN=Os08g0504400 PE=4 SV=1
Length = 304

Score = 103 bits (257), Expect = 9e-21
Identities = 51/89 (57%), Positives = 64/89 (71%)
Frame = +2

Query: 395 LGFKVEPNVRRAIFESSPVVALESTIITHGMPYPQNVQTAKEVEGIIVRHGAVPATIAIL 574
+G V P V A+ VVALESTII HGMPYP+N+QTA EVE ++ +GAVPATIAIL
Sbjct: 13 MGVAVSPEVEAALARGGAVVALESTIICHGMPYPKNLQTAMEVEAVVRENGAVPATIAIL 72

Query: 575 KGIPCIGLSVDELEELGRNGSNFTKTARR 661
G+P +GLS ++L+ L +G F KTARR
Sbjct: 73 NGVPHVGLSGEQLKSLAVSGRQFQKTARR 101