NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960684
Clone id TST39A01NGRL0008_B07
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_B07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGTGAATACCACCGCGCACTCCCCTCCTCCCTCCTTCCCTTGACCTTAGCTGATCCTCC
AGTTTTTCCTGGCATGTCGCATTCCTCTGCTAGTCGCCAGTCCTCAGCTACAGTGCCTCG
CTGTGACCCTGCTCCTGCTCGCTTCATCACAGGCCGGAGCCGCCTTCAACATGTTTGATA
TCCGGCTGGATTCATTTTACCGGGCCTTGAACCATGACCAATACCAGCCATCCTAGGGTC
TCCGAGGAGCTCGTAAAACGCTCATTTTTAATGAGGATTTCCTTACAAGTGCTGGAAAAT
TTGGACGACATTTGATTGCGGAAGGGGACTATCCAGACACTGGCGAAGCGAATACTTCGA
ATGATTCTACCGCACCCTTTGCAATATGAATCCCTTATGTCATTCTCTCTCGAGAATATG
TGCATAGTGCATTCCCCATGTTGAAGCTCTGTATGTATTGTGTCACGTTGGAACATATGA
TGTCCATGCTGATCACACATCANATAATTGCCTAAGTATTACTTTGGATATCTTGTAATT
AATCGATCGTAGACATGTTGCCCGCGGTGCAACGAANGCGTTTGTAGGTCTGTCTTGAGT
TAT
■■Homology search results ■■ -
sp_hit_id Q9TV36
Definition sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa
Align length 49
Score (bit) 31.2
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960684|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B07, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1         31   4.2  
sp|P98133|FBN1_BOVIN Fibrillin-1 OS=Bos taurus GN=FBN1 PE=1 SV=1       31   4.2  
sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabdi...    30   9.4  

>sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1
          Length = 2871

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 380  CNMNPLCHSLSRICA*--CIPHVEALYVLCHVGTYDVHADHTSXNCLSI 520
            CN    C  +  IC+   CI  V + Y LCH G +  +AD T   CL I
Sbjct: 1847 CNDRNECQEIPNICSHGQCIDTVGSFYCLCHTG-FKTNADQTM--CLDI 1892


>sp|P98133|FBN1_BOVIN Fibrillin-1 OS=Bos taurus GN=FBN1 PE=1 SV=1
          Length = 2871

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 380  CNMNPLCHSLSRICA*--CIPHVEALYVLCHVGTYDVHADHTSXNCLSI 520
            CN    C  +  IC+   CI  V + Y LCH G +  +AD T   CL I
Sbjct: 1847 CNDRNECQEIPNICSHGQCIDTVGSFYCLCHTG-FKTNADQTM--CLDI 1892


>sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabditis
           briggsae GN=spt-16 PE=3 SV=1
          Length = 1034

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = -2

Query: 482 HHMFQRDTIHTELQHGECTMHIFSRENDIRDSYCKGCGRIIR-SIRFASVWI------VP 324
           HHM  RD +H+E Q  E    +  R N   +S+C+   R+      F S +       VP
Sbjct: 754 HHMQDRDDMHSEQQERE----LRRRLNTTFNSFCEKVSRLTNDQFEFDSPFAGLGFFGVP 809

Query: 323 FRNQMSSKFSSTC 285
           FR+  + K +++C
Sbjct: 810 FRSATTLKPTASC 822
tr_hit_id B3EGN6
Definition tr|B3EGN6|B3EGN6_CHLL2 Putative uncharacterized protein OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
Align length 68
Score (bit) 35.4
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960684|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B07, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3EGN6|B3EGN6_CHLL2 Putative uncharacterized protein OS=Chlor...    35   2.6  
tr|Q017I3|Q017I3_OSTTA Cysteine proteinase Cathepsin F (ISS) OS=...    34   7.5  
tr|Q9AAN1|Q9AAN1_CAUCR MoxR protein OS=Caulobacter crescentus GN...    34   7.6  
tr|B8H0G7|B8H0G7_CAUCR MoxR-like ATPase OS=Caulobacter crescentu...    34   7.6  
tr|P74491|P74491_SYNY3 Slr1935 protein OS=Synechocystis sp. (str...    33   9.8  

>tr|B3EGN6|B3EGN6_CHLL2 Putative uncharacterized protein
           OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
           GN=Clim_2125 PE=4 SV=1
          Length = 186

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -2

Query: 416 FSRENDIRDSYCKGCGRIIRSIRFASVWIVPFR----NQMSSKFSSTCKEILIKNERFTS 249
           F  E  I+  +C+GCG++ + + F   WI   +    + +++K S   KE   ++E   S
Sbjct: 10  FILEGKIKPGFCEGCGQVTKKV-FVGEWIPSDKPKVDDLLTAKPSKKSKEAKQRSEELPS 68

Query: 248 SSETLGWL 225
           S+E   W+
Sbjct: 69  SAENQYWI 76


>tr|Q017I3|Q017I3_OSTTA Cysteine proteinase Cathepsin F (ISS)
           OS=Ostreococcus tauri GN=Ot06g01690 PE=3 SV=1
          Length = 498

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
 Frame = -2

Query: 515 LGNYXMCDQ-HGHHMFQRDTIHTELQHGECTMHIFSRENDIRDSYCKGCGRIIRSIR--- 348
           L  Y   D+ HG H F R  +       +   H   R  D RD Y K C R+I ++R   
Sbjct: 223 LSPYASSDETHGAHPFDRKAVGLGRVKWDALKHSLPRHFDARDEYPK-CARLIGTVRDQG 281

Query: 347 -FASVWIVPFRNQMSSK--FSSTCKEILIKNERFTSSSETLG 231
              S W V     M+ +   SS  KE+   + +F  S    G
Sbjct: 282 KCGSCWAVAATEIMNDRLCISSGGKEVAELSPQFALSCYNSG 323


>tr|Q9AAN1|Q9AAN1_CAUCR MoxR protein OS=Caulobacter crescentus
           GN=CC_0566 PE=4 SV=1
          Length = 323

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 327 PLPQSNVVQ-IFQHL*GNPH*K*AFYELLGDPRMAGIGHGSRPGKMNPAGYQTC*RRLRP 151
           PLP++ + + +F+H+   P         +   R   +GHG R G+M+PA +      + P
Sbjct: 164 PLPEAQLDRFLFKHVLNYPS--------IEQERAIVVGHGQRTGQMDPAAF-----GVEP 210

Query: 150 VMKRAGAGSQRGTVAEDWRLAEE 82
           V+ RA   +   TVA+  RL +E
Sbjct: 211 VLDRAAIDAAVATVAQA-RLTDE 232


>tr|B8H0G7|B8H0G7_CAUCR MoxR-like ATPase OS=Caulobacter crescentus
           NA1000 GN=CCNA_00601 PE=4 SV=1
          Length = 323

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 327 PLPQSNVVQ-IFQHL*GNPH*K*AFYELLGDPRMAGIGHGSRPGKMNPAGYQTC*RRLRP 151
           PLP++ + + +F+H+   P         +   R   +GHG R G+M+PA +      + P
Sbjct: 164 PLPEAQLDRFLFKHVLNYPS--------IEQERAIVVGHGQRTGQMDPAAF-----GVEP 210

Query: 150 VMKRAGAGSQRGTVAEDWRLAEE 82
           V+ RA   +   TVA+  RL +E
Sbjct: 211 VLDRAAIDAAVATVAQA-RLTDE 232


>tr|P74491|P74491_SYNY3 Slr1935 protein OS=Synechocystis sp. (strain
           PCC 6803) GN=slr1935 PE=4 SV=1
          Length = 465

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -2

Query: 380 KGCGRIIRSIRFASVWIVPFRNQMSSKFSSTCKEILIKNERFTSSSETLGWLVLVMVQGP 201
           +G G ++R+ RF  +W+    +Q++ KF       LI N     +    GW+  +M+   
Sbjct: 10  QGFGPVLRNSRFLFLWVGQIFSQLADKFYLVLMIALIANHYQGENQSISGWVSAIMIANT 69

Query: 200 V 198
           +
Sbjct: 70  I 70