DK960684
Clone id TST39A01NGRL0008_B07
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_B07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGTGAATACCACCGCGCACTCCCCTCCTCCCTCCTTCCCTTGACCTTAGCTGATCCTCC
AGTTTTTCCTGGCATGTCGCATTCCTCTGCTAGTCGCCAGTCCTCAGCTACAGTGCCTCG
CTGTGACCCTGCTCCTGCTCGCTTCATCACAGGCCGGAGCCGCCTTCAACATGTTTGATA
TCCGGCTGGATTCATTTTACCGGGCCTTGAACCATGACCAATACCAGCCATCCTAGGGTC
TCCGAGGAGCTCGTAAAACGCTCATTTTTAATGAGGATTTCCTTACAAGTGCTGGAAAAT
TTGGACGACATTTGATTGCGGAAGGGGACTATCCAGACACTGGCGAAGCGAATACTTCGA
ATGATTCTACCGCACCCTTTGCAATATGAATCCCTTATGTCATTCTCTCTCGAGAATATG
TGCATAGTGCATTCCCCATGTTGAAGCTCTGTATGTATTGTGTCACGTTGGAACATATGA
TGTCCATGCTGATCACACATCANATAATTGCCTAAGTATTACTTTGGATATCTTGTAATT
AATCGATCGTAGACATGTTGCCCGCGGTGCAACGAANGCGTTTGTAGGTCTGTCTTGAGT
TAT
■■Homology search results ■■ -
sp_hit_id Q9TV36
Definition sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa
Align length 49
Score (bit) 31.2
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960684|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B07, 5'
(603 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1 31 4.2
sp|P98133|FBN1_BOVIN Fibrillin-1 OS=Bos taurus GN=FBN1 PE=1 SV=1 31 4.2
sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabdi... 30 9.4

>sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1
Length = 2871

Score = 31.2 bits (69), Expect = 4.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2

Query: 380 CNMNPLCHSLSRICA*--CIPHVEALYVLCHVGTYDVHADHTSXNCLSI 520
CN C + IC+ CI V + Y LCH G + +AD T CL I
Sbjct: 1847 CNDRNECQEIPNICSHGQCIDTVGSFYCLCHTG-FKTNADQTM--CLDI 1892


>sp|P98133|FBN1_BOVIN Fibrillin-1 OS=Bos taurus GN=FBN1 PE=1 SV=1
Length = 2871

Score = 31.2 bits (69), Expect = 4.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2

Query: 380 CNMNPLCHSLSRICA*--CIPHVEALYVLCHVGTYDVHADHTSXNCLSI 520
CN C + IC+ CI V + Y LCH G + +AD T CL I
Sbjct: 1847 CNDRNECQEIPNICSHGQCIDTVGSFYCLCHTG-FKTNADQTM--CLDI 1892


>sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabditis
briggsae GN=spt-16 PE=3 SV=1
Length = 1034

Score = 30.0 bits (66), Expect = 9.4
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -2

Query: 482 HHMFQRDTIHTELQHGECTMHIFSRENDIRDSYCKGCGRIIR-SIRFASVWI------VP 324
HHM RD +H+E Q E + R N +S+C+ R+ F S + VP
Sbjct: 754 HHMQDRDDMHSEQQERE----LRRRLNTTFNSFCEKVSRLTNDQFEFDSPFAGLGFFGVP 809

Query: 323 FRNQMSSKFSSTC 285
FR+ + K +++C
Sbjct: 810 FRSATTLKPTASC 822


tr_hit_id B3EGN6
Definition tr|B3EGN6|B3EGN6_CHLL2 Putative uncharacterized protein OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
Align length 68
Score (bit) 35.4
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960684|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B07, 5'
(603 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3EGN6|B3EGN6_CHLL2 Putative uncharacterized protein OS=Chlor... 35 2.6
tr|Q017I3|Q017I3_OSTTA Cysteine proteinase Cathepsin F (ISS) OS=... 34 7.5
tr|Q9AAN1|Q9AAN1_CAUCR MoxR protein OS=Caulobacter crescentus GN... 34 7.6
tr|B8H0G7|B8H0G7_CAUCR MoxR-like ATPase OS=Caulobacter crescentu... 34 7.6
tr|P74491|P74491_SYNY3 Slr1935 protein OS=Synechocystis sp. (str... 33 9.8

>tr|B3EGN6|B3EGN6_CHLL2 Putative uncharacterized protein
OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
GN=Clim_2125 PE=4 SV=1
Length = 186

Score = 35.4 bits (80), Expect = 2.6
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = -2

Query: 416 FSRENDIRDSYCKGCGRIIRSIRFASVWIVPFR----NQMSSKFSSTCKEILIKNERFTS 249
F E I+ +C+GCG++ + + F WI + + +++K S KE ++E S
Sbjct: 10 FILEGKIKPGFCEGCGQVTKKV-FVGEWIPSDKPKVDDLLTAKPSKKSKEAKQRSEELPS 68

Query: 248 SSETLGWL 225
S+E W+
Sbjct: 69 SAENQYWI 76


>tr|Q017I3|Q017I3_OSTTA Cysteine proteinase Cathepsin F (ISS)
OS=Ostreococcus tauri GN=Ot06g01690 PE=3 SV=1
Length = 498

Score = 33.9 bits (76), Expect = 7.5
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Frame = -2

Query: 515 LGNYXMCDQ-HGHHMFQRDTIHTELQHGECTMHIFSRENDIRDSYCKGCGRIIRSIR--- 348
L Y D+ HG H F R + + H R D RD Y K C R+I ++R
Sbjct: 223 LSPYASSDETHGAHPFDRKAVGLGRVKWDALKHSLPRHFDARDEYPK-CARLIGTVRDQG 281

Query: 347 -FASVWIVPFRNQMSSK--FSSTCKEILIKNERFTSSSETLG 231
S W V M+ + SS KE+ + +F S G
Sbjct: 282 KCGSCWAVAATEIMNDRLCISSGGKEVAELSPQFALSCYNSG 323


>tr|Q9AAN1|Q9AAN1_CAUCR MoxR protein OS=Caulobacter crescentus
GN=CC_0566 PE=4 SV=1
Length = 323

Score = 33.9 bits (76), Expect = 7.6
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -1

Query: 327 PLPQSNVVQ-IFQHL*GNPH*K*AFYELLGDPRMAGIGHGSRPGKMNPAGYQTC*RRLRP 151
PLP++ + + +F+H+ P + R +GHG R G+M+PA + + P
Sbjct: 164 PLPEAQLDRFLFKHVLNYPS--------IEQERAIVVGHGQRTGQMDPAAF-----GVEP 210

Query: 150 VMKRAGAGSQRGTVAEDWRLAEE 82
V+ RA + TVA+ RL +E
Sbjct: 211 VLDRAAIDAAVATVAQA-RLTDE 232


>tr|B8H0G7|B8H0G7_CAUCR MoxR-like ATPase OS=Caulobacter crescentus
NA1000 GN=CCNA_00601 PE=4 SV=1
Length = 323

Score = 33.9 bits (76), Expect = 7.6
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -1

Query: 327 PLPQSNVVQ-IFQHL*GNPH*K*AFYELLGDPRMAGIGHGSRPGKMNPAGYQTC*RRLRP 151
PLP++ + + +F+H+ P + R +GHG R G+M+PA + + P
Sbjct: 164 PLPEAQLDRFLFKHVLNYPS--------IEQERAIVVGHGQRTGQMDPAAF-----GVEP 210

Query: 150 VMKRAGAGSQRGTVAEDWRLAEE 82
V+ RA + TVA+ RL +E
Sbjct: 211 VLDRAAIDAAVATVAQA-RLTDE 232


>tr|P74491|P74491_SYNY3 Slr1935 protein OS=Synechocystis sp. (strain
PCC 6803) GN=slr1935 PE=4 SV=1
Length = 465

Score = 33.5 bits (75), Expect = 9.8
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -2

Query: 380 KGCGRIIRSIRFASVWIVPFRNQMSSKFSSTCKEILIKNERFTSSSETLGWLVLVMVQGP 201
+G G ++R+ RF +W+ +Q++ KF LI N + GW+ +M+
Sbjct: 10 QGFGPVLRNSRFLFLWVGQIFSQLADKFYLVLMIALIANHYQGENQSISGWVSAIMIANT 69

Query: 200 V 198
+
Sbjct: 70 I 70