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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960698
Clone id TST39A01NGRL0008_B21
Library
Length 677
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_B21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAGCTTTCAGAGAGCTCATCATCAACACGGGACGTGGGGTCTCAATACGACATCAGAGTC
TCAGAGAGGAAGCCAGAGGATTCATTGTAGTAGGACTCGTAGGAGTCTCTTCCGCACACA
GCAAAGTGGAGAGGGAGACAGGGCTGAGGGGAGCCGAGCCCCGACCATCCCGCCTCCACT
CATCTCTCTGCACAGAGAAGAGCCTAAGTGCTCTACAAGCCATCGCCTATCATTCCTCTT
CTCTCTTTTTTGAGTCGACCCCTTTCTCTGTCTGCGGGGCAGTGGACTGGCAATTTCATG
AGGCGCCTGCTTCGATCCCCCCCCCCCTTCTTCTGTCCGCAGCCCCACACATATAACACA
CACACACACACACACACACACACACACACGATCCCGCCGTCCCTGCTACTGTTTGGGGCT
CAAGGAGCGCATCGATTTTTGCAGCTCTCTTGCGAACTTGAGAACTCCTTGTTCTGCTAA
ATCTGAGTACGTCACCACACATGCGAAACCTCCATTTTACGCAGAAACCAATCTTCCCCC
CTGCGTGACAGAGGTCCTCAGCTGTACTATACGCACCCCATACCTTTGTGAATTATGTTG
TTACCAGACATGAACCTTTATGAGCGGTCTGCCAAGTCCCTTCGCTCAGCTTGTCTTTCC
ATTTCCCTCGTTCTTCT
■■Homology search results ■■ -
sp_hit_id P36782
Definition sp|P36782|VE2_HPV12 Regulatory protein E2 OS=Human papillomavirus type 12
Align length 75
Score (bit) 35.0
E-value 0.36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960698|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B21, 5'
         (677 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36782|VE2_HPV12 Regulatory protein E2 OS=Human papillomaviru...    35   0.36 
sp|A8EW04|MRAY_ARCB4 Phospho-N-acetylmuramoyl-pentapeptide-trans...    34   0.62 
sp|Q96LP6|CL042_HUMAN Uncharacterized protein C12orf42 OS=Homo s...    32   3.1  
sp|P37547|YABF_BACSU Uncharacterized protein yabF OS=Bacillus su...    32   4.0  
sp|P20930|FILA_HUMAN Filaggrin OS=Homo sapiens GN=FLG PE=1 SV=3        32   4.0  
sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor ...    30   9.0  
sp|Q8I7C3|LASP1_DROME LIM and SH3 domain protein Lasp OS=Drosoph...    30   9.0  
sp|O74354|DNT1_SCHPO Nucleolar protein dnt1 OS=Schizosaccharomyc...    30   9.0  

>sp|P36782|VE2_HPV12 Regulatory protein E2 OS=Human papillomavirus
           type 12 GN=E2 PE=3 SV=1
          Length = 494

 Score = 35.0 bits (79), Expect = 0.36
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -3

Query: 339 RTEEGGGGSKQAPHEIASPLPRRQRKGSTQKREKRNDRRWLVEHLGSSLCREMS-GGGMV 163
           R E GG G ++      SP P+R R GS   R+    R    E +G SL    S   G +
Sbjct: 346 RGERGGRGKRRDRSSSTSPTPKRSRAGSRSSRQ----RGVSPEQVGRSLQSVSSKHRGRL 401

Query: 162 GARLPSALSPSPLCC 118
           G  L  AL P  + C
Sbjct: 402 GRLLEEALDPPVIIC 416


>sp|A8EW04|MRAY_ARCB4
           Phospho-N-acetylmuramoyl-pentapeptide-transferase
           OS=Arcobacter butzleri (strain RM4018) GN=mraY PE=3 SV=1
          Length = 353

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = +3

Query: 96  LVGVSSAHSKVERETGLRGAEPRPSRLHSSLCTEKSLSALQAIAYHSSSLFFESTPF--- 266
           L+G+   +SK+ +E    G  PR   +   LC   S++ +  +  HS+ LF   TPF   
Sbjct: 105 LIGIQDDYSKISKEKNSAGLTPRMKLIFQFLCA-ASIAGILFLYGHSTELF---TPFYKF 160

Query: 267 -----SVCGAVDWQF 296
                 V G V W F
Sbjct: 161 PLFEMGVFGIVFWMF 175


>sp|Q96LP6|CL042_HUMAN Uncharacterized protein C12orf42 OS=Homo
           sapiens GN=C12orf42 PE=2 SV=1
          Length = 360

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +3

Query: 486 STSPHMRNLHFTQKPIFPPA*QRSSAVLYAPHTFVNYVVTR 608
           S SP  R+LHF   P+FP   Q S A     HT   Y+V R
Sbjct: 72  SESPKFRSLHFLNFPVFPERTQNSMACKRLLHT-CQYIVPR 111


>sp|P37547|YABF_BACSU Uncharacterized protein yabF OS=Bacillus
           subtilis GN=yabF PE=4 SV=1
          Length = 186

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 565 TAEDLCHAGGKIGFCVKWRFRMCGDVLRFSRTRSSQVRKR 446
           +AEDL HAG   G   K R    GD+L+   T   Q++KR
Sbjct: 122 SAEDLIHAGLIGGPAAKCRRERLGDLLKIGYTNGKQLQKR 161


>sp|P20930|FILA_HUMAN Filaggrin OS=Homo sapiens GN=FLG PE=1 SV=3
          Length = 4061

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 14   AHHQHGT-WGLNTTSESQRGSQRIHCSRTRRSLFRTQQSGEGDRAEGSR 157
            +HH H T  G +  S  Q GS+    SRT R+    +QSG+G R  GSR
Sbjct: 2814 SHHSHTTSQGRSDASRGQSGSRS--ASRTTRN---EEQSGDGSRHSGSR 2857


>sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor 1
           OS=Homo sapiens GN=PEAR1 PE=1 SV=1
          Length = 1037

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -2

Query: 295 NCQSTAPQTEKGVDSKKRXXXX*AMACRALRLFSVQRDEWRRDGRGSAPLSPVSL----- 131
           +C S  P    GV+   R     A+AC  +    V ++ W+R G  S P  P +      
Sbjct: 433 HCASLCPPDTYGVNCSARCSCENAIACSPIDGECVCKEGWQR-GNCSVPCPPGTWGFSCN 491

Query: 130 STLLCAEETPTSPTT 86
           ++  CA E   SP T
Sbjct: 492 ASCQCAHEAVCSPQT 506


>sp|Q8I7C3|LASP1_DROME LIM and SH3 domain protein Lasp OS=Drosophila
           melanogaster GN=Lasp PE=1 SV=2
          Length = 657

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +2

Query: 26  HGTWGLNTTSESQRGSQRIHCSRTRRSLFRTQQSGEGDRAEGSRAPTIPPPLISLHREE 202
           HG        E QRGS  +  S      F  Q + E        A  IPP   +LH+++
Sbjct: 122 HGDLEKKAAMEKQRGSAEVSDSSNESEYFSEQLAAEQFSQYAPTASPIPPAATTLHQQQ 180


>sp|O74354|DNT1_SCHPO Nucleolar protein dnt1 OS=Schizosaccharomyces
           pombe GN=dnt1 PE=1 SV=1
          Length = 599

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 306 APHEIASPLPRRQRKGSTQKREKRNDRRWLVEHLGSSLCRE 184
           A  + +S  P R     ++ R K NDR++LVEH  ++L +E
Sbjct: 243 ASSDSSSDAPLRTLSSPSRLRMKDNDRKYLVEHSPAALIKE 283
tr_hit_id Q2QXU4
Definition tr|Q2QXU4|Q2QXU4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 75
Score (bit) 38.1
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960698|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_B21, 5'
         (677 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QXU4|Q2QXU4_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.52 
tr|A2SJ05|A2SJ05_METPP Efflux ABC transporter, permease protein ...    34   9.7  
tr|Q7QHX6|Q7QHX6_ANOGA AGAP001028-PA (Fragment) OS=Anopheles gam...    34   9.7  
tr|Q4DZG1|Q4DZG1_TRYCR Putative uncharacterized protein OS=Trypa...    34   9.7  

>tr|Q2QXU4|Q2QXU4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os12g04870 PE=4 SV=1
          Length = 178

 Score = 38.1 bits (87), Expect = 0.52
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -3

Query: 327 GGGGSKQAPHEIASPLPRRQRKGSTQKREKRNDRRWLVEHLGSSLCREMSGGGMV----- 163
           GGGGSK+A  +  S   RR+RK   +      D  W  E L    C+ +   GM+     
Sbjct: 87  GGGGSKKASKKAISSSSRRRRKVGLELSFHAEDGVWRKEILMEEQCQSLDFSGMIYYDVA 146

Query: 162 GARLPSALSPSPLCC 118
           G RL     P  L C
Sbjct: 147 GRRLEQPPPPRTLLC 161


>tr|A2SJ05|A2SJ05_METPP Efflux ABC transporter, permease protein
           OS=Methylibium petroleiphilum (strain PM1) GN=Mpe_A2590
           PE=4 SV=1
          Length = 275

 Score = 33.9 bits (76), Expect = 9.7
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
 Frame = +3

Query: 57  SLREEARGFIVVGLVGV--------SSAHSKVERETGLR-----GAEPRPSRLHSSLCTE 197
           SL++    +IV GLVG+        SS     +RE GL         PRP  L   LC  
Sbjct: 62  SLQQPYDVYIVPGLVGMVLLFNGMQSSLSMVYDREMGLMRLLLTAPLPRPWLLFCKLCAT 121

Query: 198 KSLSALQAIAYHSSSL 245
             LSALQA+A+ + +L
Sbjct: 122 ALLSALQALAFVALAL 137


>tr|Q7QHX6|Q7QHX6_ANOGA AGAP001028-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP001028 PE=4 SV=4
          Length = 262

 Score = 33.9 bits (76), Expect = 9.7
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -3

Query: 333 EEGGGGSKQAPHE--IASPLPRRQRKGSTQKREKRNDRR---WLVEHLGSSLCREMSGGG 169
           +EGGGGSK       I  PL   +RK S ++R+ R  RR   WL+         E+ G G
Sbjct: 68  QEGGGGSKAKDSRFFIKKPLNALERKKSEKQRKARQLRRLRKWLMPKNAIVALHELQGPG 127

Query: 168 M 166
           M
Sbjct: 128 M 128


>tr|Q4DZG1|Q4DZG1_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053506825.20 PE=4 SV=1
          Length = 878

 Score = 33.9 bits (76), Expect = 9.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 35  WGLNTTSESQRGSQRIHCSRTRRSLFRTQQSGEGDRAEGSRAPTIP-PPLISLHR 196
           W  +    +Q  SQ+  C+ +  S      +G G R EG+R  T+P   L S+HR
Sbjct: 43  WSASPRMTAQESSQKQPCTSSSSSAANAATNGSGGRREGTRHATLPFSGLSSIHR 97