BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960706|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_C05, 5'
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P74180|FTSW_SYNY3 Probable cell division protein ftsW OS=Syne...    33   0.64 
sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine dehydr...    31   3.1  
sp|Q9DE49|PGFRA_DANRE Alpha-type platelet-derived growth factor ...    30   5.3  
sp|P57717|ESR1_DANRE Estrogen receptor OS=Danio rerio GN=esr1 PE...    30   5.3  
sp|Q59Y41|MSH3_CANAL DNA mismatch repair protein MSH3 OS=Candida...    30   9.1  

>sp|P74180|FTSW_SYNY3 Probable cell division protein ftsW
           OS=Synechocystis sp. (strain PCC 6803) GN=ftsW PE=3 SV=1
          Length = 393

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 85  RVKWNNRIV---VYAFLLGVVLAEHSGTATAAVWCSLWMQRT*SGITWLLLLNVS 240
           R  W +R++   ++A  LG +L + + + TA     LW+    SG+ W+ L++ +
Sbjct: 151 RFPWRSRLIWLGIFALTLGSILLQPNLSTTALCGMGLWLIALASGLPWIYLISTA 205


>sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine
           dehydrogenase OS=Haemophilus influenzae GN=thrA PE=3
           SV=1
          Length = 815

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
 Frame = -2

Query: 362 VIAELNSGRFELCHNLLHSCRDNIQRYPFPKDNVSLP--VDVELTFSNRSHVM-PL*VLC 192
           V A  NS R  L  N L     N++ +    +N + P   DV L+F    HV+ P+ V C
Sbjct: 500 VCAIANSNRMLLDENGL-----NLEDWKNDLENATQPSDFDVLLSFIKLHHVVNPVFVDC 554

Query: 191 IQSEHQTA--AVAVPECSASTTPNKKAYTTILLFHLTRGTTHILTEYHKFL 45
             +E      A A+ E     TPNKKA T  L+++      +     HKFL
Sbjct: 555 TSAESVAGLYARALKEGFHVVTPNKKANTRELVYY-NELRQNAQASQHKFL 604


>sp|Q9DE49|PGFRA_DANRE Alpha-type platelet-derived growth factor
           receptor OS=Danio rerio GN=pdgfra PE=2 SV=1
          Length = 1059

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 335 FELCHNLLHSCRDNIQRYPFPKDNVSLPVDVELTFSN--RSHVM 210
           +++C NL H   D+ Q  P P ++  + V++++   N   SH++
Sbjct: 421 WDICKNLKHCANDSSQWMPLPINSTDITVELQMNVDNHIESHII 464


>sp|P57717|ESR1_DANRE Estrogen receptor OS=Danio rerio GN=esr1 PE=2
           SV=2
          Length = 569

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 21  ELCTSMVQQELVIFCQNVCGTSGQVEQQNCSIRLFVGSGACRAFWYCHSCCLVFALDAED 200
           ELC++  +QEL    +   G     E + C++     SG     W C  C   F    + 
Sbjct: 123 ELCSATDRQELYTGSRAAGGFDSGKETRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQG 182

Query: 201 LKWHYMAPIT-ECQLHINRQR 260
               Y+ P T +C +  NR++
Sbjct: 183 HN-DYVCPATNQCTIDRNRRK 202


>sp|Q59Y41|MSH3_CANAL DNA mismatch repair protein MSH3 OS=Candida
           albicans GN=MSH3 PE=3 SV=1
          Length = 1037

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 189 DAEDLKWHYMA-PITECQLHINRQRHIIFGKGISLDIVST*MKQVVTKLKSTTV 347
           D ED ++HY + P T   +H+ R     +  G+   I ST +KQ+    KS+ V
Sbjct: 156 DIEDTRFHYCSIPDTRLHIHLQRILSHGYKVGVVKQIESTIVKQIEKTSKSSDV 209

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960706|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_C05, 5'
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0C457|Q0C457_HYPNA Acetyl-CoA acyltransferase/thiolase famil...    34   4.0  
tr|A9S8W7|A9S8W7_PHYPA Predicted protein OS=Physcomitrella paten...    33   6.6  

>tr|Q0C457|Q0C457_HYPNA Acetyl-CoA acyltransferase/thiolase family
           protein OS=Hyphomonas neptunium (strain ATCC 15444)
           GN=HNE_0758 PE=3 SV=1
          Length = 416

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 264 CVFAG*CGADIQ**EPCNATLGPLHPKRTPNSSCGSTRMLCKHHSQQKGVYYNSVVPLDP 85
           CV AG C       E  + T     PK  P    G+TR+  KH   Q+GV  +++  L+ 
Sbjct: 113 CVIAGGC-------EMMSYTAASADPKNPPTMDAGNTRLREKHPQSQQGVCADAIATLEG 165

Query: 84  RYHTHFDRIS 55
                 DR++
Sbjct: 166 IDREAVDRLA 175


>tr|A9S8W7|A9S8W7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76124 PE=4 SV=1
          Length = 147

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 188 QSEHQTAAVAVPECSASTTPNKKAYTTILLFHLTRGTTH 72
           QSEH+T +  V   +AS TPNK+    +LL+ +   T H
Sbjct: 99  QSEHETGSGRVHRLTASETPNKRRVQQLLLYLILPHTPH 137